Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004695.1

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

30577 .. 32244

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004695.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgttgacggatcgggttgtagtcggttttgcagtggaaaaaactgtgaaccgaaccgagaccgattactcgggttcggtctcggctaaagagagagccgccgttgcagaacctcacccacacagcgcaatggccagaatcaaggtacacgagctgaggcagaagtcgaaggccgatcttttggcccagctcaaggatctcaaggcggagctggccctcctccgcgtcgccaaggtcaccggtgtagcacccaacaagctctccaagattaaggttgtgaggcttgggattgctcaggtgttgacagtgatcttgcagaagcagaaggctgcgttgagggaggtgtacaagagcaagaagctcttgcctcttgatcttcgtcccaagaagaccagggccattcgccgaaagctcaccaagcaccaggcatctttgaagactgaacgtgagaagaagagggagatgtactaccccttgaggaagtttgccatcaaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

166

Amino Acids

18.8

Weight (kDa)

10.62

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	3 cut(s)	99, 206, 223
AclWI	GGATC	2 cut(s)	18, 204
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	3 cut(s)	147, 347, 467
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	392, 423
AluBI	AGCT	6 cut(s)	154, 190, 211, 259, 361, 412
AluI	AGCT	6 cut(s)	154, 190, 211, 259, 361, 412
Alw26I	GTCTC	2 cut(s)	53, 85
AlwI	GGATC	2 cut(s)	18, 204
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	5 cut(s)	132, 171, 183, 213, 396
ApeKI	GCWGC	1 cut(s)	329
AsiGI	ACCGGT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	184, 214, 396
AsuHPI	GGTGA	3 cut(s)	107, 229, 406
AvaI	CYCGRG	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	134
BauI	CACGAG	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	395, 443
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	394, 425
BcoDI	GTCTC	2 cut(s)	53, 85
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	99, 330
BlsI	GCNGC	2 cut(s)	100, 331
Bme1390I	CCNGG	2 cut(s)	394, 425
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	184, 214, 396
BmrFI	CCNGG	2 cut(s)	394, 425
BmsI	GCATC	1 cut(s)	437
BpiI	GAAGAC	2 cut(s)	395, 443
Bpu10I	CCTNAGC	2 cut(s)	155, 294
BpuEI	CTTGAG	3 cut(s)	176, 185, 496
BsaI	GGTCTC	2 cut(s)	53, 85
BsaJI	CCNNGG	2 cut(s)	231, 393
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	394, 425
BseDI	CCNNGG	2 cut(s)	231, 393
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	146, 308
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	134, 173, 185, 215, 398
BshTI	ACCGGT	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	53, 85
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	5 cut(s)	134, 173, 185, 215, 398
Bso31I	GGTCTC	2 cut(s)	53, 85
BsoBI	CYCGRG	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	10, 175, 196, 309, 373
BspACI	CCGC	3 cut(s)	99, 206, 223
BspANI	GGCC	5 cut(s)	134, 173, 185, 215, 398
BspCNI	CTCAG	2 cut(s)	147, 307
BspFNI	CGCG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	18, 204
BspTNI	GGTCTC	2 cut(s)	53, 85
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	231, 393
BssMI	GATC	5 cut(s)	10, 175, 196, 309, 373
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	394, 425
Bst4CI	ACNGT	2 cut(s)	46, 307
Bst6I	CTCTTC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	155, 294
BstEII	GGTNACC	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	5 cut(s)	13, 178, 199, 312, 376
BstMAI	GTCTC	2 cut(s)	53, 85
BstMBI	GATC	5 cut(s)	10, 175, 196, 309, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 212, 418, 494
BstNI	CCWGG	2 cut(s)	394, 425
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	392, 423
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	2 cut(s)	395, 443
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	5 cut(s)	134, 173, 185, 215, 398
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 312
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	184, 214, 396
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	146, 346, 466
CspAI	ACCGGT	1 cut(s)	239
CviQI	GTAC	3 cut(s)	146, 346, 466
DdeI	CTNAG	2 cut(s)	155, 294
DpnI	GATC	5 cut(s)	12, 177, 198, 311, 375
DpnII	GATC	5 cut(s)	10, 175, 196, 309, 373
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	53, 85
Eco88I	CYCGRG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	392, 423
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaiI	YATR	1 cut(s)	499
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	99, 330
Fsp4HI	GCNGC	2 cut(s)	99, 330
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	2 cut(s)	99, 330
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	5 cut(s)	134, 173, 185, 215, 398
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	6, 303
HindII	GTYRAC	2 cut(s)	6, 303
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	107, 229, 406
Hpy166II	GTNNAC	5 cut(s)	6, 49, 148, 303, 346
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	5 cut(s)	6, 49, 148, 303, 346
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	163, 319
HpyCH4III	ACNGT	2 cut(s)	46, 307
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	32, 107, 316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 212, 418, 494
HpyF3I	CTNAG	2 cut(s)	155, 294
HpySE526I	ACGT	1 cut(s)	445
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	10, 175, 196, 309, 373
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	148, 197, 200, 253, 281, 379, 406, 410, 437
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	437
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	5 cut(s)	12, 177, 198, 311, 375
MboI	GATC	5 cut(s)	10, 175, 196, 309, 373
MboII	GAAGA	5 cut(s)	368, 400, 448, 463, 466
MflI	RGATCY	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	134
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	394, 425
MvaI	CCWGG	2 cut(s)	394, 425
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	104, 212, 418, 494
NdeII	GATC	5 cut(s)	10, 175, 196, 309, 373
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	100, 331
Psp6I	CCWGG	2 cut(s)	392, 423
PspEI	GGTNACC	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	392, 423
PspPI	GGNCC	3 cut(s)	184, 214, 396
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	3 cut(s)	147, 347, 467
RsaNI	GTAC	3 cut(s)	146, 346, 466
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	99, 330
Sau3AI	GATC	5 cut(s)	10, 175, 196, 309, 373
Sau96I	GGNCC	3 cut(s)	184, 214, 396
ScrFI	CCNGG	2 cut(s)	394, 425
SfaNI	GCATC	1 cut(s)	437
SgrAI	CRCCGGYG	1 cut(s)	239
SmlI	CTYRAG	3 cut(s)	191, 200, 475
SmoI	CTYRAG	3 cut(s)	191, 200, 475
SsiI	CCGC	3 cut(s)	99, 206, 223
StyD4I	CCNGG	2 cut(s)	392, 423
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	46, 307
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	167
TaqII	GACCGA	2 cut(s)	67, 77
TatI	WGTACW	2 cut(s)	345, 465
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	39, 312
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	39, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.