Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

14729550 .. 14730035

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTCACAGAAGCAGAAGGCTGCTCTCAGAGAAGTGTACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAGAAGACCAGGGCCATCCGTCGGAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTACTATCCTTTGAGGAAGTATGCCATTAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

64

Amino Acids

7.67

Weight (kDa)

10.8

Isoelectric Point (pI)

70.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	38, 158
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	83, 114
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbsI	GAAGAC	2 cut(s)	86, 134
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	85, 116
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	85, 116
BmgT120I	GGNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	85, 116
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	86, 134
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	85, 116
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	85, 116
BstAUI	TGTACA	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	26, 189
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 185
BstNI	CCWGG	2 cut(s)	85, 116
BstSCI	CCNGG	2 cut(s)	83, 114
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	86, 134
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	37, 157
CviJI	RGCY	5 cut(s)	20, 52, 89, 103, 188
CviKI_1	RGCY	5 cut(s)	20, 52, 89, 103, 188
CviQI	GTAC	2 cut(s)	37, 157
DdeI	CTNAG	2 cut(s)	26, 189
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	83, 114
FaiI	YATR	1 cut(s)	177
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	29, 99
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	10, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 185
HpyF3I	CTNAG	2 cut(s)	26, 189
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	4 cut(s)	70, 97, 101, 128
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	91, 139, 154, 157
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	69, 93, 129, 162
MseI	TTAA	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	85, 116
MvaI	CCWGG	2 cut(s)	85, 116
MwoI	GCNNNNNNNGC	2 cut(s)	109, 185
NdeII	GATC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	3
PkrI	GCNGC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	83, 114
PspGI	CCWGG	2 cut(s)	83, 114
PspPI	GGNCC	1 cut(s)	87
RsaI	GTAC	2 cut(s)	38, 158
RsaNI	GTAC	2 cut(s)	37, 157
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	85, 116
SetI	ASST	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	83, 114
TaqII	GACCGA	1 cut(s)	146
TatI	WGTACW	2 cut(s)	36, 156
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	2 cut(s)	59, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.