Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010918.1

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Forward (+)

32808 .. 33315

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010918.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggccagaatcaaggtacacgagctgaggcagaagtcgaaggccgatcttttggcccagctcaaggatctcaaggcggagctggccctcctccgcgtcgccaaggtcaccggtggagcacccaacaagctctccaagattaaggttgtgaggcttgggattgctcaggtgttgacagtgatctcgcagaagcagaaggctgcgttgagggaggtgtacaagaacaagaagctcttgcctcttgatcttcgtcccaagaagaccagggccattcgccgaaagctcaccaagcaccaggtactctctcttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

104

Amino Acids

11.73

Weight (kDa)

11.38

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	77, 94
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	18, 218, 300
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgeI	ACCGGT	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	263, 294
AluBI	AGCT	6 cut(s)	25, 61, 82, 130, 232, 283
AluI	AGCT	6 cut(s)	25, 61, 82, 130, 232, 283
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	5 cut(s)	3, 42, 54, 84, 267
ApeKI	GCWGC	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	55, 85, 267
AsuHPI	GGTGA	2 cut(s)	100, 277
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	265, 296
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	265, 296
BmgT120I	GGNCC	3 cut(s)	55, 85, 267
BmrFI	CCNGG	2 cut(s)	265, 296
BpiI	GAAGAC	1 cut(s)	266
Bpu10I	CCTNAGC	2 cut(s)	26, 165
BpuEI	CTTGAG	2 cut(s)	47, 56
BsaJI	CCNNGG	2 cut(s)	102, 264
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	265, 296
BseDI	CCNNGG	2 cut(s)	102, 264
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	17, 179
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	5 cut(s)	5, 44, 56, 86, 269
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	5 cut(s)	5, 44, 56, 86, 269
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	46, 67, 180, 244
BspACI	CCGC	2 cut(s)	77, 94
BspANI	GGCC	5 cut(s)	5, 44, 56, 86, 269
BspCNI	CTCAG	2 cut(s)	18, 178
BspFNI	CGCG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	102, 264
BssMI	GATC	4 cut(s)	46, 67, 180, 244
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	265, 296
Bst4CI	ACNGT	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	26, 165
BstEII	GGTNACC	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	4 cut(s)	49, 70, 183, 247
BstMBI	GATC	4 cut(s)	46, 67, 180, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 289
BstNI	CCWGG	2 cut(s)	265, 296
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	263, 294
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	5 cut(s)	5, 44, 56, 86, 269
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	55, 85, 267
CseI	GACGC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	17, 217, 299
CspAI	ACCGGT	1 cut(s)	110
CviQI	GTAC	3 cut(s)	17, 217, 299
DdeI	CTNAG	2 cut(s)	26, 165
DpnI	GATC	4 cut(s)	48, 69, 182, 246
DpnII	GATC	4 cut(s)	46, 67, 180, 244
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	263, 294
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	5 cut(s)	5, 44, 56, 86, 269
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	100, 277
Hpy166II	GTNNAC	3 cut(s)	19, 174, 217
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	3 cut(s)	19, 174, 217
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	34, 190
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 289
HpyF3I	CTNAG	2 cut(s)	26, 165
Kzo9I	GATC	4 cut(s)	46, 67, 180, 244
LmnI	GCTCC	2 cut(s)	79, 116
LpnPI	CCDG	9 cut(s)	19, 68, 71, 124, 152, 250, 277, 281, 308
Lsp1109I	GCAGC	1 cut(s)	187
MabI	ACCWGGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	48, 69, 182, 246
MboI	GATC	4 cut(s)	46, 67, 180, 244
MboII	GAAGA	2 cut(s)	239, 271
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	21, 98, 101, 144, 201, 205, 249
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	265, 296
MvaI	CCWGG	2 cut(s)	265, 296
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	83, 289
NdeII	GATC	4 cut(s)	46, 67, 180, 244
NmuCI	GTSAC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	263, 294
PspEI	GGTNACC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	2 cut(s)	263, 294
PspPI	GGNCC	3 cut(s)	55, 85, 267
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	18, 218, 300
RsaNI	GTAC	3 cut(s)	17, 217, 299
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	46, 67, 180, 244
Sau96I	GGNCC	3 cut(s)	55, 85, 267
ScrFI	CCNGG	2 cut(s)	265, 296
SduI	GDGCHC	1 cut(s)	121
SexAI	ACCWGGT	1 cut(s)	294
SgrAI	CRCCGGYG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	62, 71
SmoI	CTYRAG	2 cut(s)	62, 71
SsiI	CCGC	2 cut(s)	77, 94
StyD4I	CCNGG	2 cut(s)	263, 294
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	38
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.