Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Forward (+)

5848256 .. 5850203

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGGATCAAGGTCCACGAGCTCAGAAACAAGACAAAGGCAGAGCTTTTGGGTCAACTGAAGGATCTGAAGGCAGAGCTTGCCCTCCTCCGAGTCGCCAAGGTCACCGGTGGAGCCCCCAACAAGCTCTCCAAAATCAAGGTGGTGAGGCTTTCAATAGCACAGGTGTTGACAGTGATTTCCCAGAAGCAAAAAGCGGCTCTAAGGGAAGTCTACAAGAACAAGAAGTTTCTTCCTCTGGATTTGCGCCCAAAGAAGACCAGGGCCATCAGAAGGCGTCTGACCAAGCATCAGGCATCTTTGAAGACAGAACGGGAGAAGAAGAAGGAGATGTACTTCCCATTGAGGAAGTTTGCAATCAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

124

Amino Acids

14.21

Weight (kDa)

11.18

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	17, 75
AcuI	CTGAAG	2 cut(s)	83, 92
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	159, 307
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	4 cut(s)	25, 49, 82, 130
AluI	AGCT	4 cut(s)	25, 49, 82, 130
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	17, 75
AoxI	GGCC	1 cut(s)	267
AsiGI	ACCGGT	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	16, 267
AsuHPI	GGTGA	2 cut(s)	100, 160
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	27, 121
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	266, 314
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	265
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 267
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	301, 308
BpiI	GAAGAC	2 cut(s)	266, 314
BsaHI	GRCGYC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	102, 264
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	2 cut(s)	102, 264
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	27, 121
Bsp143I	GATC	2 cut(s)	9, 67
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	17, 75
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	102, 264
BssMI	GATC	2 cut(s)	9, 67
BssNI	GRCGYC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	26, 206
BstEII	GGTNACC	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	12, 70
BstMBI	GATC	2 cut(s)	9, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 365
BstNI	CCWGG	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	263
BstV2I	GAAGAC	2 cut(s)	266, 314
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	16, 267
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	110
CviJI	RGCY	8 cut(s)	25, 49, 82, 119, 130, 154, 203, 269
CviKI_1	RGCY	8 cut(s)	25, 49, 82, 119, 130, 154, 203, 269
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	26, 206
DpnI	GATC	2 cut(s)	11, 69
DpnII	GATC	2 cut(s)	9, 67
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	2 cut(s)	27, 121
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	83, 92
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	27, 121
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	201
FriOI	GRGCYC	2 cut(s)	27, 121
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	59, 174
HindII	GTYRAC	2 cut(s)	59, 174
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	100, 160
Hpy166II	GTNNAC	4 cut(s)	19, 59, 174, 217
Hpy188I	TCNGA	5 cut(s)	29, 72, 95, 275, 285
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	4 cut(s)	19, 59, 174, 217
HpyAV	CCTTC	4 cut(s)	58, 67, 270, 322
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 365
HpyF3I	CTNAG	2 cut(s)	26, 206
Hsp92I	GRCGYC	1 cut(s)	280
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	9, 67
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	124, 152, 200, 227, 250, 277, 281
LweI	GCATC	2 cut(s)	301, 308
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	11, 69
MboI	GATC	2 cut(s)	9, 67
MboII	GAAGA	5 cut(s)	227, 271, 319, 334, 337
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	27, 121
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	98, 101, 144, 249, 342
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	83, 365
NdeII	GATC	2 cut(s)	9, 67
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	106
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	16, 267
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	27
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	9, 67
Sau96I	GGNCC	2 cut(s)	16, 267
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	27, 121
SetI	ASST	8 cut(s)	18, 27, 51, 84, 108, 132, 147, 171
SfaNI	GCATC	2 cut(s)	301, 308
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	16
SsiI	CCGC	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.