Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Forward (+)

2916922 .. 2918247

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGGATTAAGGTTCACGAATTGAGGGAGAAGTCGAAGAGCGATCTTCAAAACCAGCTGAAGGAACTCAAAGCTGAGCTCGCTCTCCTCCGTGTCGCTAAAGTCACCGGAGGTGCTCCAAACAAGCTCTCTAAAATCAAGGTCGTGCGTAAATCCATAGCTCAGGTTTTGACAGTGTCTTCTCAGAAGCAGAAGTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTGCTTCCTCTTGATCTCCGTCCCAAGAAGACCCGTGCTATTCGTAGACGCCTCACCAAACACCAGGCCTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAATAAGGAAGTACGCTATCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

10.92

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29	PF00831	8 - 64	2.8e-19	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	53, 307
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	5 cut(s)	61, 77, 82, 130, 164
AluI	AGCT	5 cut(s)	61, 77, 82, 130, 164
Alw21I	GWGCWC	2 cut(s)	84, 121
AoxI	GGCC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	100, 277
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	3 cut(s)	174, 266, 314
Bbv12I	GWGCWC	2 cut(s)	84, 121
BciT130I	CCWGG	1 cut(s)	296
BlpI	GCTNAGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BpiI	GAAGAC	3 cut(s)	174, 266, 314
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	69, 179, 200
BseRI	GAGGAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	84, 121
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	84, 121
Bsp143I	GATC	2 cut(s)	46, 244
Bsp1720I	GCTNAGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	3 cut(s)	70, 178, 199
BspQI	GCTCTTC	1 cut(s)	35
BssMI	GATC	2 cut(s)	46, 244
BssNI	GRCGYC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	78, 165, 186, 206
BstKTI	GATC	2 cut(s)	49, 247
BstMBI	GATC	2 cut(s)	46, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV2I	GAAGAC	3 cut(s)	174, 266, 314
BsuRI	GGCC	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	84
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	355
CviJI	RGCY	6 cut(s)	61, 77, 82, 130, 164, 299
CviKI_1	RGCY	6 cut(s)	61, 77, 82, 130, 164, 299
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	78, 165, 186, 206
DpnI	GATC	2 cut(s)	48, 246
DpnII	GATC	2 cut(s)	46, 244
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	84
FaiI	YATR	2 cut(s)	161, 217
FaqI	GGGAC	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	100, 277
Hpy166II	GTNNAC	2 cut(s)	19, 278
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	20, 242
Hpy8I	GTNNAC	2 cut(s)	19, 278
HpyAV	CCTTC	2 cut(s)	58, 322
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	78, 165, 186, 206
Hsp92I	GRCGYC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	46, 244
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	71, 124, 152, 281, 308
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	48, 246
MboI	GATC	2 cut(s)	46, 244
MboII	GAAGA	7 cut(s)	41, 52, 174, 271, 319, 334, 337
MhlI	GDGCHC	2 cut(s)	84, 121
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	6 cut(s)	21, 101, 107, 249, 293, 310
MseI	TTAA	2 cut(s)	12, 370
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	46, 244
NmuCI	GTSAC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	12, 370
Sau3AI	GATC	2 cut(s)	46, 244
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	84, 121
SetI	ASST	9 cut(s)	18, 63, 79, 84, 118, 132, 147, 166, 171
Sse9I	AATT	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	12, 370
Tru9I	TTAA	2 cut(s)	12, 370
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	83, 239
TspRI	CASTG	1 cut(s)	183
Tth111I	GACNNNGTC	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.