AT2G40150

function) domain. TBL gene family has 46 members, two of which (TBR AT5G06700 and TBL3 AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff Wolf Scheible, 2010, personal communication)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16775424 .. 16777243
1820 bp
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UTR
Exon/CDS
Intron
AT2G40150.1

Sequence Viewer

Length: 1275 bp
ATGCAACCTTCAAGAACAAGAGTTTCATTTTTTGAAACAGGAGAGACCATGAAGCAAAGAAAGAAGAGTTATCTCTCAATCTTCGTGATCTTCTTCTCTCTTTTCTTCTTCGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATTGCTGACTTCACATCTTCGAACCCATTCTCTAGTTCATTTGTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGTCAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTGACGGAGCAAGTGACTTGTTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGATGGCAACCTAGAGACTGTTCTTTACCAAAATTCAATGCAAGAGTGTTGTTAGAGAAGCTGAGGAACAAGAGATTGATGTTTGTCGGTGACTCGTTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGTGATTCCTCCCGGTAGAAAAAGCTTAAACCAGACCGGTTCACTCACTGTTTTCAAAATCCAGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTTTTGGTGGAATCAAATTCAGACGATCCGGAAAAGCACAGTATAATCGACCGTATAATAATGCCAGAGTCCATCGAGAAGCATGGAGTCAACTGGATAGGCGTTGACTTTCTTGTCTTCAATAGTTACATCTGGTGGATGAATACTGTCTCCATCAAAGTCCTACGTGGATCGTTCGATGATGGGGACACAGAGTATGATGAGATCAAACGGCCAATAGCGTACGAGAGGGTGTTGAGGACATTGGGAGATTGGGTGGACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATGAGCATGTCTCCTCTTCACATCAAGAGCTCAGATTGGGCTAATCCTGAGGGTATAAGGTGTGCTTTAGAGACAACACCGATCTTGAACATGTCTTTCAACGTGGCTTACGGGCAGTTTTCCGCGGTGGGGACGGATTACAGGCTGTTTCCGGTGGCGGAAAACGTTACACAGTCTCTAAAAGTTCCTATTCATTTCCTCAACATTACTGCATTGTCTGAGTATCGTAAAGATGCACATACTTCGGTTTACACGATCAAGCAAGGCAAGTTGCTGACGCGGGAGCAGCAAAACGATCCAGCCAATTTTGCTGATTGCATACACTGGTGCTTACCAGGCCTTCCTGATACATGGAATGAGTTTCTCTATACACATATTATTTCTCGAAGATGA

Protein Analysis

424

Amino Acids

49.4

Weight (kDa)

5.71

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 70 - 123 3.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 124 - 418 5.9e-89 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 3 cut(s) 560, 1007, 1162
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 5 cut(s) 200, 1005, 1007, 1040, 1162
AclI AACGTT 1 cut(s) 1047
AclWI GGATC 5 cut(s) 122, 605, 763, 851, 1172
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 2 cut(s) 377, 601
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 3 cut(s) 125, 809, 868
AfiI CCNNNNNNNGG 2 cut(s) 231, 1011
AflIII ACRYGT 1 cut(s) 972
AgeI ACCGGT 2 cut(s) 224, 521
AgsI TTSAA 8 cut(s) 12, 35, 382, 482, 541, 706, 970, 982
AjnI CCWGG 2 cut(s) 546, 1216
AluBI AGCT 3 cut(s) 406, 510, 912
AluI AGCT 3 cut(s) 406, 510, 912
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 6 cut(s) 38, 354, 739, 897, 947, 1062
AlwI GGATC 5 cut(s) 122, 605, 763, 851, 1172
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 797, 1219
ApeKI GCWGC 1 cut(s) 1168
ApoI RAATTY 2 cut(s) 377, 601
AsiGI ACCGGT 2 cut(s) 224, 521
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 1 cut(s) 844
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 214, 446
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 844
AxyI CCTNAGG 1 cut(s) 930
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 914
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 1180
BccI CCATC 4 cut(s) 342, 665, 746, 761
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 2 cut(s) 1107, 1141
BciT130I CCWGG 2 cut(s) 548, 1218
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 6 cut(s) 38, 354, 739, 897, 947, 1062
BfaI CTAG 2 cut(s) 180, 357
BfoI RGCGCY 1 cut(s) 584
BisI GCNGC 2 cut(s) 200, 1169
BlsI GCNGC 2 cut(s) 201, 1170
Bme1390I CCNGG 3 cut(s) 498, 548, 1218
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 2 cut(s) 452, 582
BmrFI CCNGG 3 cut(s) 498, 548, 1218
BmsI GCATC 1 cut(s) 1105
BpiI GAAGAC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 877, 909
Bpu10I CCTNAGC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 1005
BsaWI WCCGGW 5 cut(s) 224, 447, 521, 613, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 1011
Bse118I RCCGGY 2 cut(s) 224, 521
Bse1I ACTGG 2 cut(s) 683, 1211
Bse21I CCTNAGG 1 cut(s) 930
Bse3DI GCAATG 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 2 cut(s) 548, 1218
BseDI CCNNGG 1 cut(s) 1005
BseGI GGATG 2 cut(s) 211, 729
BseLI CCNNNNNNNGG 2 cut(s) 231, 1011
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 4 cut(s) 398, 921, 927, 1092
BseNI ACTGG 2 cut(s) 683, 1211
BseRI GAGGAG 1 cut(s) 885
BseXI GCAGC 1 cut(s) 1180
Bsh1236I CGCG 3 cut(s) 560, 1007, 1162
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 2 cut(s) 799, 1221
BshNI GGYRCC 1 cut(s) 580
BshTI ACCGGT 2 cut(s) 224, 521
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 7 cut(s) 203, 225, 448, 498, 522, 614, 1034
BsiWI CGTACG 1 cut(s) 807
BslFI GGGAC 2 cut(s) 785, 1027
BslI CCNNNNNNNGG 2 cut(s) 231, 1011
BsmAI GTCTC 6 cut(s) 38, 354, 739, 897, 947, 1062
BsmFI GGGAC 2 cut(s) 785, 1027
BsnI GGCC 2 cut(s) 799, 1221
Bso31I GGTCTC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 914
Bsp13I TCCGGA 1 cut(s) 613
Bsp1407I TGTACA 1 cut(s) 123
BspACI CCGC 5 cut(s) 200, 1005, 1007, 1040, 1162
BspANI GGCC 2 cut(s) 799, 1221
BspCNI CTCAG 4 cut(s) 399, 922, 926, 1093
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 3 cut(s) 560, 1007, 1162
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 2 cut(s) 452, 582
BspPI GGATC 5 cut(s) 122, 605, 763, 851, 1172
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 2 cut(s) 224, 521
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 2 cut(s) 683, 1211
BssAI RCCGGY 2 cut(s) 224, 521
BssECI CCNNGG 1 cut(s) 1005
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 2 cut(s) 548, 1218
Bst4CI ACNGT 8 cut(s) 365, 535, 565, 626, 638, 733, 874, 1056
Bst6I CTCTTC 3 cut(s) 59, 267, 903
BstACI GRCGYC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 167
BstDEI CTNAG 5 cut(s) 407, 863, 913, 930, 1101
BstDSI CCRYGG 1 cut(s) 1005
BstF5I GGATG 2 cut(s) 211, 729
BstFNI CGCG 3 cut(s) 560, 1007, 1162
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 1 cut(s) 583
BstMAI GTCTC 6 cut(s) 38, 354, 739, 897, 947, 1062
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 3 cut(s) 1168, 1190, 1218
BstNI CCWGG 2 cut(s) 548, 1218
BstNSI RCATGY 2 cut(s) 892, 976
BstSCI CCNGG 3 cut(s) 496, 546, 1216
BstUI CGCG 3 cut(s) 560, 1007, 1162
BstV1I GCAGC 1 cut(s) 1180
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 2 cut(s) 799, 1221
BtgI CCRYGG 1 cut(s) 1005
BtsCI GGATG 2 cut(s) 211, 729
BtsIMutI CAGTG 3 cut(s) 492, 531, 1204
CciI TCATGA 1 cut(s) 882
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 2 cut(s) 224, 521
Cfr13I GGNCC 1 cut(s) 844
Cfr42I CCGCGG 1 cut(s) 1008
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 3 cut(s) 124, 808, 867
CspAI ACCGGT 2 cut(s) 224, 521
CviAII CATG 7 cut(s) 49, 121, 668, 883, 889, 973, 1233
CviJI RGCY 9 cut(s) 406, 510, 799, 912, 923, 989, 1027, 1184, 1221
CviKI_1 RGCY 9 cut(s) 406, 510, 799, 912, 923, 989, 1027, 1184, 1221
CviQI GTAC 3 cut(s) 124, 808, 867
DdeI CTNAG 5 cut(s) 407, 863, 913, 930, 1101
DinI GGCGCC 1 cut(s) 582
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 3 cut(s) 59, 267, 903
EarI CTCTTC 3 cut(s) 59, 267, 903
EciI GGCGGA 1 cut(s) 1055
Ecl136II GAGCTC 1 cut(s) 912
Eco147I AGGCCT 1 cut(s) 1221
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 844
Eco53kI GAGCTC 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 930
EcoICRI GAGCTC 1 cut(s) 912
EcoRII CCWGG 2 cut(s) 546, 1216
EcoT38I GRGCYC 1 cut(s) 914
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
FaeI CATG 7 cut(s) 52, 124, 671, 886, 892, 976, 1236
FalI AAGNNNNNCTT 2 cut(s) 931, 963
FaqI GGGAC 2 cut(s) 785, 1027
FatI CATG 7 cut(s) 48, 120, 667, 882, 888, 972, 1232
FauI CCCGC 1 cut(s) 1155
Fnu4HI GCNGC 2 cut(s) 200, 1169
FokI GGATG 2 cut(s) 218, 736
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 2 cut(s) 200, 1169
FspBI CTAG 2 cut(s) 180, 357
GlaI GCGC 1 cut(s) 582
GluI GCNGC 2 cut(s) 200, 1169
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 799, 1221
HapII CCGG 7 cut(s) 203, 225, 448, 498, 522, 614, 1034
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 1 cut(s) 583
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 7 cut(s) 52, 124, 671, 886, 892, 976, 1236
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 2 cut(s) 676, 691
HindII GTYRAC 2 cut(s) 676, 691
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 7 cut(s) 326, 437, 461, 490, 596, 653, 672
HpaII CCGG 7 cut(s) 203, 225, 448, 498, 522, 614, 1034
HphI GGTGA 2 cut(s) 214, 446
Hpy166II GTNNAC 6 cut(s) 222, 527, 676, 691, 844, 1132
Hpy188I TCNGA 4 cut(s) 339, 607, 916, 1102
Hpy8I GTNNAC 6 cut(s) 222, 527, 676, 691, 844, 1132
Hpy99I CGWCG 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 18, 312, 1232
HpyCH4III ACNGT 8 cut(s) 365, 535, 565, 626, 638, 733, 874, 1056
HpyCH4IV ACGT 3 cut(s) 751, 984, 1047
HpyCH4V TGCA 5 cut(s) 4, 386, 1094, 1118, 1200
HpyF10VI GCNNNNNNNGC 3 cut(s) 1168, 1190, 1218
HpyF3I CTNAG 5 cut(s) 407, 863, 913, 930, 1101
HpySE526I ACGT 3 cut(s) 751, 984, 1047
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 7 cut(s) 52, 124, 671, 886, 892, 976, 1236
HspAI GCGC 1 cut(s) 581
KasI GGCGCC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 613
KspI CCGCGG 1 cut(s) 1008
LmnI GCTCC 2 cut(s) 292, 1165
Lsp1109I GCAGC 1 cut(s) 1180
LweI GCATC 1 cut(s) 1105
MaeI CTAG 2 cut(s) 180, 357
MaeII ACGT 3 cut(s) 751, 984, 1047
MaeIII GTNAC 4 cut(s) 298, 434, 710, 1048
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 4 cut(s) 340, 377, 601, 1186
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 3 cut(s) 431, 662, 681
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 308, 443, 512
MslI CAYNNNNRTG 1 cut(s) 887
MspA1I CMGCKG 1 cut(s) 1007
MspI CCGG 7 cut(s) 203, 225, 448, 498, 522, 614, 1034
MspR9I CCNGG 3 cut(s) 498, 548, 1218
MvaI CCWGG 2 cut(s) 548, 1218
MvnI CGCG 3 cut(s) 560, 1007, 1162
MwoI GCNNNNNNNGC 3 cut(s) 1168, 1190, 1218
NarI GGCGCC 1 cut(s) 581
NciI CCSGG 1 cut(s) 498
NlaIII CATG 7 cut(s) 52, 124, 671, 886, 892, 976, 1236
NlaIV GGNNCC 2 cut(s) 452, 582
NmuCI GTSAC 2 cut(s) 298, 434
NspI RCATGY 2 cut(s) 892, 976
NspV TTCGAA 1 cut(s) 167
PagI TCATGA 1 cut(s) 882
PceI AGGCCT 1 cut(s) 1221
PciI ACATGT 1 cut(s) 972
PcsI WCGNNNNNNNCGW 1 cut(s) 1133
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 4 cut(s) 326, 461, 490, 596
Pfl23II CGTACG 1 cut(s) 807
PfoI TCCNGGA 1 cut(s) 546
PinAI ACCGGT 2 cut(s) 224, 521
PkrI GCNGC 2 cut(s) 201, 1170
PleI GAGTC 3 cut(s) 431, 661, 680
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 3 cut(s) 431, 661, 680
Ppu21I YACGTR 1 cut(s) 752
PscI ACATGT 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 914
Psp1406I AACGTT 1 cut(s) 1047
Psp6I CCWGG 2 cut(s) 546, 1216
PspGI CCWGG 2 cut(s) 546, 1216
PspLI CGTACG 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 452, 582
PspPI GGNCC 1 cut(s) 844
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 3 cut(s) 125, 809, 868
RsaNI GTAC 3 cut(s) 124, 808, 867
RseI CAYNNNNRTG 1 cut(s) 887
SacI GAGCTC 1 cut(s) 914
SacII CCGCGG 1 cut(s) 1008
SaqAI TTAA 3 cut(s) 308, 443, 512
SatI GCNGC 2 cut(s) 200, 1169
Sau96I GGNCC 1 cut(s) 844
SchI GAGTC 3 cut(s) 431, 662, 681
ScrFI CCNGG 3 cut(s) 498, 548, 1218
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 1 cut(s) 1105
SfoI GGCGCC 1 cut(s) 582
Sfr303I CCGCGG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 167
SgrBI CCGCGG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 1 cut(s) 887
Sse9I AATT 4 cut(s) 340, 377, 601, 1186
SseBI AGGCCT 1 cut(s) 1221
SsiI CCGC 5 cut(s) 200, 1005, 1007, 1040, 1162
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 2 cut(s) 180, 357
SstI GAGCTC 1 cut(s) 914
StuI AGGCCT 1 cut(s) 1221
StyD4I CCNGG 3 cut(s) 496, 546, 1216
TaaI ACNGT 8 cut(s) 365, 535, 565, 626, 638, 733, 874, 1056
TaiI ACGT 3 cut(s) 754, 987, 1050
TaqI TCGA 6 cut(s) 167, 240, 633, 660, 762, 1267
TasI AATT 4 cut(s) 340, 377, 601, 1186
TatI WGTACW 2 cut(s) 123, 866
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 4 cut(s) 326, 461, 490, 596
Tru1I TTAA 3 cut(s) 308, 443, 512
Tru9I TTAA 3 cut(s) 308, 443, 512
TscAI CASTG 3 cut(s) 492, 538, 1211
TseFI GTSAC 2 cut(s) 298, 434
TseI GCWGC 1 cut(s) 1168
Tsp45I GTSAC 2 cut(s) 298, 434
TspDTI ATGAA 7 cut(s) 15, 65, 109, 174, 740, 871, 1064
TspGWI ACGGA 3 cut(s) 305, 330, 1031
TspRI CASTG 3 cut(s) 492, 538, 1211
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 2 cut(s) 377, 601
XceI RCATGY 2 cut(s) 892, 976
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 180, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.