Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

46083577 .. 46087007

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCAGATACCTCGCAGAAAATCACCCTTCTCTTCTTCACCTGAAGCTTTTGCAATTATGAAGAGCCGCAAGAACAATAATCTACCAATCTTCGTCGTCGTCTTCTCGATTTTTCTGTTTGGGATTTTCATGTACAATGAGGACGTCAAATCCATCGCCGAATTCCCATTCTCTTCGAGCCCAAAAGCGCAAGAACTCCGAGAAGAGCAAGAAACGAAACAGAGCACCCCTGTTTCGACACAGAGCGACTCTGTTTCCGAAATCCCGAACAGGGTTTCTAAAAGCGCCACTTCAAGAACCCAATTGGAGGAAACCCAGTTGGAGAATCCGGTTTCTGAAGAGACCCAAGAACCTTTGGAGCTGAAAACGATCATGGAAGAGAAAGACGAAGACCTGGACAAGAAGATTGAGGTGAATGAAGAAGATGATATGGAAGAGATTGAATTGCCTCCTGAAGATTGTGACTTGTTTAATGGGGACTGGGTTTTCGATCCTGTGACTCATCCTTTGTATAAAGAAGACGAATGTGAGTTCTTGACGGCCCAAGTGACTTGTATGAGGAATGGAAGAAAGGACTCTCTGTATCAACATTGGAGATGGCAGCCCAGAGATTGTAATCTTCCAAAGTTCAATGCAAGATTGTTGCTAGAGAAACTAAGAAACAAGAGGCTGATGTTTGTGGGGGATTCATTGAATAGAAACCAGTGGGAATCAATGATATGTTTTGCGCAGTCTGTAATTCCTCCTGGGAGAAAGACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGAGGATTATAATGCTACGGTGGAGTTCTACTGGGCACCATTTCTGGTGGAGTCAAATTCAGATGATCCATTGATGCACAGCATACAAAACCGTATAATCATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGATAGGTGTGGACTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCGTTCGATCAAGGAGCAACGGAGTACGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACAACATGGGCGAAATGGGTGGACAAAAATATTGACCCCAATCGTACCACTGTCTTCTTCACCAGCATGTCTCCTCTCCACATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

386

Amino Acids

45.24

Weight (kDa)

5.21

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	153 - 206	8.1e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	207 - 385	9.2e-57	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AatII	GACGTC	1 cut(s)	147
Acc16I	TGCGCA	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	5 cut(s)	485, 768, 781, 854, 1012
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	2 cut(s)	161, 850
AcuI	CTGAAG	3 cut(s)	63, 357, 474
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	134, 1031, 1117
AfiI	CCNNNNNNNGG	3 cut(s)	271, 307, 1051
AgsI	TTSAA	6 cut(s)	294, 443, 631, 694, 955, 985
AjnI	CCWGG	2 cut(s)	393, 745
AluBI	AGCT	2 cut(s)	47, 361
AluI	AGCT	2 cut(s)	47, 361
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	335, 1146
AlwI	GGATC	5 cut(s)	485, 768, 781, 854, 1012
AoxI	GGCC	2 cut(s)	540, 1046
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	161, 850
ArsI	GACNNNNNNTTYG	4 cut(s)	470, 490, 502, 522
Asp700I	GAANNNNTTC	1 cut(s)	980
AspLEI	GCGC	3 cut(s)	190, 287, 730
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	5 cut(s)	15, 30, 424, 775, 1123
BaeGI	GKGCMC	1 cut(s)	832
BamHI	GGATCC	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	4 cut(s)	94, 396, 525, 1117
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	161, 591
BceAI	ACGGC	2 cut(s)	555, 1033
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	395, 747
BcoDI	GTCTC	2 cut(s)	335, 1146
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	67, 602
BlsI	GCNGC	2 cut(s)	68, 603
Bme1390I	CCNGG	2 cut(s)	395, 747
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	775, 831
BmrFI	CCNGG	2 cut(s)	395, 747
BmrI	ACTGGG	3 cut(s)	310, 490, 835
BmsI	GCATC	1 cut(s)	858
BmuI	ACTGGG	3 cut(s)	310, 490, 835
BpiI	GAAGAC	4 cut(s)	94, 396, 525, 1117
Bsa29I	ATCGAT	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	746, 759
BsaWI	WCCGGW	2 cut(s)	328, 1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 307, 1051
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	4 cut(s)	316, 485, 703, 830
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	395, 747
BseCI	ATCGAT	1 cut(s)	905
BseDI	CCNNGG	2 cut(s)	746, 759
BseGI	GGATG	2 cut(s)	502, 978
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	271, 307, 1051
BseNI	ACTGG	4 cut(s)	316, 485, 703, 830
BseRI	GAGGAG	1 cut(s)	1134
BseSI	GKGCMC	1 cut(s)	832
BseX3I	CGGCCG	1 cut(s)	1046
BseXI	GCAGC	1 cut(s)	613
Bsh1285I	CGRYCG	2 cut(s)	1045, 1049
BshFI	GGCC	2 cut(s)	542, 1048
BshNI	GGYRCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	905
BsiEI	CGRYCG	2 cut(s)	1045, 1049
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	329, 1045, 1060
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	271, 307, 1051
BsmAI	GTCTC	2 cut(s)	335, 1146
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	542, 1048
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	3 cut(s)	182, 227, 832
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	2 cut(s)	542, 1048
BspDI	ATCGAT	1 cut(s)	905
BspLI	GGNNCC	2 cut(s)	775, 831
BspPI	GGATC	5 cut(s)	485, 768, 781, 854, 1012
BspQI	GCTCTTC	2 cut(s)	56, 198
BspT107I	GGYRCC	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	1044
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	316, 485, 703, 830
BssAI	RCCGGY	1 cut(s)	1044
BssECI	CCNNGG	2 cut(s)	746, 759
BssMI	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	395, 747
Bst4CI	ACNGT	3 cut(s)	814, 887, 1123
Bst6I	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
BstACI	GRCGYC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	502, 978
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	190, 287, 730
BstKTI	GATC	7 cut(s)	372, 493, 776, 862, 1007, 1015, 1041
BstMAI	GTCTC	2 cut(s)	335, 1146
BstMBI	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
BstMCI	CGRYCG	2 cut(s)	1045, 1049
BstNI	CCWGG	2 cut(s)	395, 747
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	2 cut(s)	393, 745
BstSLI	GKGCMC	1 cut(s)	832
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	4 cut(s)	94, 396, 525, 1117
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BstZI	CGGCCG	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	905
BsuRI	GGCC	2 cut(s)	542, 1048
BsuTUI	ATCGAT	1 cut(s)	905
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	502, 978
BtsIMutI	CAGTG	2 cut(s)	710, 1119
CfoI	GCGC	3 cut(s)	190, 287, 730
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	905
Csp6I	GTAC	3 cut(s)	133, 1030, 1116
CviAII	CATG	7 cut(s)	130, 373, 895, 917, 988, 1077, 1138
CviJI	RGCY	9 cut(s)	47, 66, 180, 361, 542, 604, 670, 1048, 1055
CviKI_1	RGCY	9 cut(s)	47, 66, 180, 361, 542, 604, 670, 1048, 1055
CviQI	GTAC	3 cut(s)	133, 1030, 1116
DdeI	CTNAG	1 cut(s)	656
DpnI	GATC	7 cut(s)	371, 492, 775, 861, 1006, 1014, 1040
DpnII	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
EaeI	YGGCCR	1 cut(s)	1046
EagI	CGGCCG	1 cut(s)	1046
Eam1104I	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
EarI	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
EclXI	CGGCCG	1 cut(s)	1046
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	335
Eco52I	CGGCCG	1 cut(s)	1046
Eco57I	CTGAAG	3 cut(s)	63, 357, 474
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	393, 745
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	7 cut(s)	133, 376, 898, 920, 991, 1080, 1141
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	7 cut(s)	129, 372, 894, 916, 987, 1076, 1137
FauNDI	CATATG	1 cut(s)	965
Fnu4HI	GCNGC	2 cut(s)	67, 602
FokI	GGATG	2 cut(s)	489, 985
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	67, 602
FspBI	CTAG	1 cut(s)	647
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	3 cut(s)	189, 286, 729
GluI	GCNGC	2 cut(s)	67, 602
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	542, 1048
HapII	CCGG	3 cut(s)	329, 1045, 1060
HhaI	GCGC	3 cut(s)	190, 287, 730
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	133, 376, 898, 920, 991, 1080, 1141
Hin6I	GCGC	3 cut(s)	188, 285, 728
HinP1I	GCGC	3 cut(s)	188, 285, 728
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	7 cut(s)	248, 325, 499, 575, 686, 710, 845
HpaII	CCGG	3 cut(s)	329, 1045, 1060
HphI	GGTGA	5 cut(s)	15, 30, 424, 775, 1123
Hpy166II	GTNNAC	2 cut(s)	940, 1093
Hpy188I	TCNGA	5 cut(s)	200, 259, 337, 791, 856
Hpy188III	TCNNGA	5 cut(s)	106, 265, 294, 452, 535
Hpy8I	GTNNAC	2 cut(s)	940, 1093
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	3 cut(s)	814, 887, 1123
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	4, 53, 635, 871
HpyF3I	CTNAG	1 cut(s)	656
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	7 cut(s)	133, 376, 898, 920, 991, 1080, 1141
HspAI	GCGC	3 cut(s)	188, 285, 728
Kzo9I	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
LguI	GCTCTTC	2 cut(s)	56, 198
LmnI	GCTCC	2 cut(s)	358, 1019
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	461, 496, 547
MalI	GATC	7 cut(s)	371, 492, 775, 861, 1006, 1014, 1040
MboI	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	3 cut(s)	182, 227, 832
MluCI	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
MlyI	GAGTC	4 cut(s)	242, 493, 569, 854
MmeI	TCCRAC	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	2 cut(s)	471, 909
MslI	CAYNNNNRTG	2 cut(s)	964, 1136
MspI	CCGG	3 cut(s)	329, 1045, 1060
MspR9I	CCNGG	2 cut(s)	395, 747
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	395, 747
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
NlaIII	CATG	7 cut(s)	133, 376, 898, 920, 991, 1080, 1141
NlaIV	GGNNCC	2 cut(s)	775, 831
NmuCI	GTSAC	3 cut(s)	461, 496, 547
NsbI	TGCGCA	1 cut(s)	729
NspI	RCATGY	1 cut(s)	1141
PciSI	GCTCTTC	2 cut(s)	56, 198
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	3 cut(s)	325, 686, 710
PkrI	GCNGC	2 cut(s)	68, 603
PleI	GAGTC	4 cut(s)	242, 493, 569, 853
PpsI	GAGTC	4 cut(s)	242, 493, 569, 853
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	393, 745
PspGI	CCWGG	2 cut(s)	393, 745
PspN4I	GGNNCC	2 cut(s)	775, 831
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	773
RsaI	GTAC	3 cut(s)	134, 1031, 1117
RsaNI	GTAC	3 cut(s)	133, 1030, 1116
RseI	CAYNNNNRTG	2 cut(s)	964, 1136
SapI	GCTCTTC	2 cut(s)	56, 198
SaqAI	TTAA	2 cut(s)	471, 909
SatI	GCNGC	2 cut(s)	67, 602
Sau3AI	GATC	7 cut(s)	369, 490, 773, 859, 1004, 1012, 1038
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	4 cut(s)	242, 493, 569, 854
ScrFI	CCNGG	2 cut(s)	395, 747
SduI	GDGCHC	3 cut(s)	182, 227, 832
SfaNI	GCATC	1 cut(s)	858
SmiMI	CAYNNNNRTG	2 cut(s)	964, 1136
Sse9I	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	1 cut(s)	1102
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	2 cut(s)	393, 745
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	814, 887, 1123
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	7 cut(s)	107, 176, 236, 489, 905, 1011, 1041
TasI	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	325, 686, 710
Tru1I	TTAA	2 cut(s)	471, 909
Tru9I	TTAA	2 cut(s)	471, 909
TscAI	CASTG	2 cut(s)	710, 1126
TseFI	GTSAC	3 cut(s)	461, 496, 547
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	3 cut(s)	461, 496, 547
TspDTI	ATGAA	6 cut(s)	74, 118, 432, 678, 989, 1004
TspGWI	ACGGA	1 cut(s)	1040
TspRI	CASTG	2 cut(s)	710, 1126
XapI	RAATTY	2 cut(s)	161, 850
XceI	RCATGY	1 cut(s)	1141
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.