Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

61582983 .. 61586858

Gene Structure 3876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCAGATACCTCGCAGAAAATCACCCTTCTCTTCTTCACCTGAAGCTTTTGCAATTATGAAGAGCCGCAAGAACAATAATCTACCAATCTTCGTCGTCGTCTTCTCGATTTTTCTGTTTGGGATTTTCATGTACAATGAGGACGTCAAATCCATCGCCGAATTCCCATTCTCTTCGAGCCCAAAAGCGCAAGAACTCCGAGAAGAGCAAGAAACGAAACAGAGCACCCCTGTTTCGACACAGAGCGACTCTGTTTCCGAAATCCCGAACAGGGTTTCTAAAAGCGCCACTTCAAGAACCCAATTGGAGGAAACCCAGTTGGAGAATCCGGTTTCTGAAGAGACCCAAGAACCTTTGGAGCTGAAAACGATCATGGAAGAGAAAGACGAAGACCTGGACAAGAAGATTGAGGTGAATGAAGAAGATGATATGGAAGAGATTGAATTGCCTCCTGAAGATTGTGACTTGTTTAATGGGGACTGGGTTTTCGATCCTGTGACTCATCCTTTGTATAAAGAAGACGAATGTGAGTTCTTGACGGCCCAAGTGACTTGTATGAGGAATGGAAGAAAGGACTCTCTGTATCAACATTGGAGATGGCAGCCCAGAGATTGTAATCTTCCAAAGTTCAATGCAAGATTGTTGCTAGAGAAACTAAGAAACAAGAGGCTGATGTTTGTGGGGGATTCATTGAATAGAAACCAGTGGGAATCAATGATATGTTTTGCGCAGTCTGTAATTCCTCCTGGGAGAAAGACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGAGGATTATAATGCTACGGTGGAGTTCTACTGGGCACCATTTCTGGTGGAGTCAAATTCAGATGATCCATTGATGCACAGCATACAAAACCGTATAATCATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGATAGGTGTGGACTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

333

Amino Acids

39.02

Weight (kDa)

5.05

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	153 - 206	6.5e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	207 - 328	8.4e-40	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AatII	GACGTC	1 cut(s)	147
Acc16I	TGCGCA	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	4 cut(s)	485, 768, 781, 854
AcsI	RAATTY	2 cut(s)	161, 850
AcuI	CTGAAG	3 cut(s)	63, 357, 474
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	271, 307
AgsI	TTSAA	6 cut(s)	294, 443, 631, 694, 955, 985
AjnI	CCWGG	2 cut(s)	393, 745
AluBI	AGCT	2 cut(s)	47, 361
AluI	AGCT	2 cut(s)	47, 361
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	4 cut(s)	485, 768, 781, 854
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	161, 850
ArsI	GACNNNNNNTTYG	4 cut(s)	470, 490, 502, 522
Asp700I	GAANNNNTTC	1 cut(s)	980
AspLEI	GCGC	3 cut(s)	190, 287, 730
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	4 cut(s)	15, 30, 424, 775
BaeGI	GKGCMC	1 cut(s)	832
BamHI	GGATCC	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	3 cut(s)	94, 396, 525
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	161, 591
BceAI	ACGGC	1 cut(s)	555
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	395, 747
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	67, 602
BlsI	GCNGC	2 cut(s)	68, 603
Bme1390I	CCNGG	2 cut(s)	395, 747
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	775, 831
BmrFI	CCNGG	2 cut(s)	395, 747
BmrI	ACTGGG	3 cut(s)	310, 490, 835
BmsI	GCATC	1 cut(s)	858
BmuI	ACTGGG	3 cut(s)	310, 490, 835
BpiI	GAAGAC	3 cut(s)	94, 396, 525
Bsa29I	ATCGAT	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	746, 759
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 307
Bse1I	ACTGG	4 cut(s)	316, 485, 703, 830
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	395, 747
BseCI	ATCGAT	1 cut(s)	905
BseDI	CCNNGG	2 cut(s)	746, 759
BseGI	GGATG	2 cut(s)	502, 978
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	271, 307
BseNI	ACTGG	4 cut(s)	316, 485, 703, 830
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	271, 307
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	3 cut(s)	182, 227, 832
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	369, 490, 773, 859
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	542
BspDI	ATCGAT	1 cut(s)	905
BspLI	GGNNCC	2 cut(s)	775, 831
BspPI	GGATC	4 cut(s)	485, 768, 781, 854
BspQI	GCTCTTC	2 cut(s)	56, 198
BspT107I	GGYRCC	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	316, 485, 703, 830
BssECI	CCNNGG	2 cut(s)	746, 759
BssMI	GATC	4 cut(s)	369, 490, 773, 859
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	395, 747
Bst4CI	ACNGT	2 cut(s)	814, 887
Bst6I	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
BstACI	GRCGYC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	502, 978
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	190, 287, 730
BstKTI	GATC	4 cut(s)	372, 493, 776, 862
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	4 cut(s)	369, 490, 773, 859
BstNI	CCWGG	2 cut(s)	395, 747
BstSCI	CCNGG	2 cut(s)	393, 745
BstSLI	GKGCMC	1 cut(s)	832
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	3 cut(s)	94, 396, 525
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
Bsu15I	ATCGAT	1 cut(s)	905
BsuRI	GGCC	1 cut(s)	542
BsuTUI	ATCGAT	1 cut(s)	905
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	502, 978
BtsIMutI	CAGTG	1 cut(s)	710
CfoI	GCGC	3 cut(s)	190, 287, 730
Cfr13I	GGNCC	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	905
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	5 cut(s)	130, 373, 895, 917, 988
CviJI	RGCY	7 cut(s)	47, 66, 180, 361, 542, 604, 670
CviKI_1	RGCY	7 cut(s)	47, 66, 180, 361, 542, 604, 670
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	656
DpnI	GATC	4 cut(s)	371, 492, 775, 861
DpnII	GATC	4 cut(s)	369, 490, 773, 859
Eam1104I	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
EarI	CTCTTC	7 cut(s)	37, 56, 178, 198, 333, 372, 429
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	335
Eco57I	CTGAAG	3 cut(s)	63, 357, 474
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	393, 745
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	5 cut(s)	133, 376, 898, 920, 991
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	5 cut(s)	129, 372, 894, 916, 987
FauNDI	CATATG	1 cut(s)	965
Fnu4HI	GCNGC	2 cut(s)	67, 602
FokI	GGATG	2 cut(s)	489, 985
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	67, 602
FspBI	CTAG	1 cut(s)	647
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	3 cut(s)	189, 286, 729
GluI	GCNGC	2 cut(s)	67, 602
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	3 cut(s)	190, 287, 730
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	133, 376, 898, 920, 991
Hin6I	GCGC	3 cut(s)	188, 285, 728
HinP1I	GCGC	3 cut(s)	188, 285, 728
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	7 cut(s)	248, 325, 499, 575, 686, 710, 845
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	4 cut(s)	15, 30, 424, 775
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188I	TCNGA	5 cut(s)	200, 259, 337, 791, 856
Hpy188III	TCNNGA	5 cut(s)	106, 265, 294, 452, 535
Hpy8I	GTNNAC	1 cut(s)	940
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	814, 887
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	4, 53, 635, 871
HpyF3I	CTNAG	1 cut(s)	656
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	133, 376, 898, 920, 991
HspAI	GCGC	3 cut(s)	188, 285, 728
Kzo9I	GATC	4 cut(s)	369, 490, 773, 859
LguI	GCTCTTC	2 cut(s)	56, 198
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	461, 496, 547
MalI	GATC	4 cut(s)	371, 492, 775, 861
MboI	GATC	4 cut(s)	369, 490, 773, 859
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	3 cut(s)	182, 227, 832
MluCI	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
MlyI	GAGTC	4 cut(s)	242, 493, 569, 854
MmeI	TCCRAC	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	2 cut(s)	471, 909
MslI	CAYNNNNRTG	1 cut(s)	964
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	395, 747
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	395, 747
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	4 cut(s)	369, 490, 773, 859
NlaIII	CATG	5 cut(s)	133, 376, 898, 920, 991
NlaIV	GGNNCC	2 cut(s)	775, 831
NmuCI	GTSAC	3 cut(s)	461, 496, 547
NsbI	TGCGCA	1 cut(s)	729
PciSI	GCTCTTC	2 cut(s)	56, 198
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	3 cut(s)	325, 686, 710
PkrI	GCNGC	2 cut(s)	68, 603
PleI	GAGTC	4 cut(s)	242, 493, 569, 853
PpsI	GAGTC	4 cut(s)	242, 493, 569, 853
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	393, 745
PspGI	CCWGG	2 cut(s)	393, 745
PspN4I	GGNNCC	2 cut(s)	775, 831
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	773
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	964
SapI	GCTCTTC	2 cut(s)	56, 198
SaqAI	TTAA	2 cut(s)	471, 909
SatI	GCNGC	2 cut(s)	67, 602
Sau3AI	GATC	4 cut(s)	369, 490, 773, 859
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	4 cut(s)	242, 493, 569, 854
ScrFI	CCNGG	2 cut(s)	395, 747
SduI	GDGCHC	3 cut(s)	182, 227, 832
SfaNI	GCATC	1 cut(s)	858
SmiMI	CAYNNNNRTG	1 cut(s)	964
Sse9I	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	2 cut(s)	393, 745
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	2 cut(s)	814, 887
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	5 cut(s)	107, 176, 236, 489, 905
TasI	AATT	8 cut(s)	54, 161, 302, 443, 738, 792, 850, 925
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	325, 686, 710
Tru1I	TTAA	2 cut(s)	471, 909
Tru9I	TTAA	2 cut(s)	471, 909
TscAI	CASTG	1 cut(s)	710
TseFI	GTSAC	3 cut(s)	461, 496, 547
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	3 cut(s)	461, 496, 547
TspDTI	ATGAA	5 cut(s)	74, 118, 432, 678, 989
TspRI	CASTG	1 cut(s)	710
XapI	RAATTY	2 cut(s)	161, 850
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.