Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

7865978 .. 7868574

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAGAGAAAGACGAAGACCTGGACAAGAAGATTGAGGTGAATGAAGAAGATGATATGGAAGAGATTGAATTGCCTCCTGAAGATTGTGACCTGTTTAATGGGGATTGGGTTTTCGATCCTGTGACTCATCCTTTGTATAAAGAAGATGAATGTGAGTTCTTGACGGCCCAAGTGACTTGTATGAGGAATGGAAGAAAGGACTCTCTGTATCAACATTGGAGATGGCAGCCCAGAGATTGTAATCTTCCAAAGTTTAATGCAAGATTGTTGCTAGAGAAACTTAGAAACAAGAGGCTCATGTTTGTGGGGGACTCATTGAATAGAAACCAGTGGGAATCAATGATATGTTTTGCGCAGTCTGTAATTCCTCCTGGAAGTAAGACCTTGGTGAAGAATGGATCTCTCTCTGTTTTCAGAATTGAGGATTATAATGCTACGGTGGAGTTCTACTGGGCTCCATTTCTGGTGGAGTCAAATTCAGATGATCCATTGATGCACAGCATACAAAACCGTATAATCATGCCCAAATCAATTAAGAAGCATGGTAAAAATTGGATAGGTGTGGACTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGGAGCAACGGAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGCTAAATGGGTGGACAAAAATATTGACCCCAATCGTACCACTGTCTTCTTCACCAGCATGTCTCCTCTCCACATCAAGAGCTTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACACCGTTGGAAGTGGGCACAGACAGAAGGCTCTTTGTGATTTCAAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACTTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCGGACACATGGAATGAGTTTCTTTACACGCGTATCATCTCGCGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

378

Amino Acids

44.29

Weight (kDa)

5.34

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	29 - 82	7.8e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	83 - 371	9.8e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
Acc16I	TGCGCA	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	1068
AccII	CGCG	2 cut(s)	1114, 1126
AciI	CCGC	1 cut(s)	1126
AclWI	GGATC	4 cut(s)	113, 409, 482, 640
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	1019
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	1112
AgsI	TTSAA	5 cut(s)	71, 322, 583, 613, 900
AjnI	CCWGG	2 cut(s)	21, 373
AluBI	AGCT	2 cut(s)	789, 1034
AluI	AGCT	2 cut(s)	789, 1034
Alw26I	GTCTC	2 cut(s)	774, 824
AlwI	GGATC	4 cut(s)	113, 409, 482, 640
Ama87I	CYCGRG	1 cut(s)	1076
AoxI	GGCC	2 cut(s)	168, 674
ApeKI	GCWGC	3 cut(s)	229, 1027, 1081
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	169, 988
AsuC2I	CCSGG	3 cut(s)	1040, 1077, 1078
AsuHPI	GGTGA	3 cut(s)	52, 403, 751
AvaI	CYCGRG	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	988
BaeGI	GKGCMC	1 cut(s)	875
BaeI	ACNNNNGTAYC	2 cut(s)	1099, 1132
BanI	GGYRCC	1 cut(s)	1068
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	24, 745
BbvI	GCAGC	3 cut(s)	241, 1039, 1068
BccI	CCATC	3 cut(s)	219, 803, 1004
BceAI	ACGGC	2 cut(s)	183, 661
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BciT130I	CCWGG	2 cut(s)	23, 375
BcnI	CCSGG	3 cut(s)	1040, 1077, 1078
BcoDI	GTCTC	2 cut(s)	774, 824
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	230, 1028, 1082
BlsI	GCNGC	3 cut(s)	231, 1029, 1083
Bme1390I	CCNGG	5 cut(s)	23, 375, 1040, 1077, 1078
Bme18I	GGWCC	1 cut(s)	988
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	2 cut(s)	169, 988
BmiI	GGNNCC	2 cut(s)	459, 1070
BmrFI	CCNGG	5 cut(s)	23, 375, 1040, 1077, 1078
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	3 cut(s)	486, 964, 1068
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	24, 745
BpuMI	CCSGG	3 cut(s)	1040, 1077, 1078
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	1019
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	4 cut(s)	387, 984, 1075, 1076
BsaWI	WCCGGW	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	3 cut(s)	331, 458, 1070
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	23, 375
BseDI	CCNNGG	4 cut(s)	387, 984, 1075, 1076
BseGI	GGATG	3 cut(s)	130, 606, 1059
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	1 cut(s)	924
BseNI	ACTGG	3 cut(s)	331, 458, 1070
BseRI	GAGGAG	1 cut(s)	762
BseSI	GKGCMC	1 cut(s)	875
BseX3I	CGGCCG	1 cut(s)	674
BseXI	GCAGC	3 cut(s)	241, 1039, 1068
Bsh1236I	CGCG	2 cut(s)	1114, 1126
Bsh1285I	CGRYCG	2 cut(s)	673, 677
BshFI	GGCC	2 cut(s)	170, 676
BshNI	GGYRCC	1 cut(s)	1068
BsiEI	CGRYCG	2 cut(s)	673, 677
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	6 cut(s)	673, 688, 1022, 1040, 1077, 1085
BslFI	GGGAC	2 cut(s)	326, 812
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	2 cut(s)	774, 824
BsmFI	GGGAC	2 cut(s)	326, 812
BsnI	GGCC	2 cut(s)	170, 676
Bso31I	GGTCTC	1 cut(s)	824
BsoBI	CYCGRG	1 cut(s)	1076
Bsp1286I	GDGCHC	2 cut(s)	460, 875
Bsp143I	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
BspACI	CCGC	1 cut(s)	1126
BspANI	GGCC	2 cut(s)	170, 676
BspFNI	CGCG	2 cut(s)	1114, 1126
BspLI	GGNNCC	2 cut(s)	459, 1070
BspPI	GGATC	4 cut(s)	113, 409, 482, 640
BspT107I	GGYRCC	1 cut(s)	1068
BspTNI	GGTCTC	1 cut(s)	824
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	331, 458, 1070
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	4 cut(s)	387, 984, 1075, 1076
BssMI	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
BssNI	GRCGYC	1 cut(s)	1019
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	23, 375
Bst4CI	ACNGT	4 cut(s)	442, 515, 751, 861
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	1019
BstC8I	GCNNGC	1 cut(s)	1032
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	130, 606, 1059
BstFNI	CGCG	2 cut(s)	1114, 1126
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	6 cut(s)	121, 404, 490, 635, 643, 669
BstMAI	GTCTC	2 cut(s)	774, 824
BstMBI	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
BstMCI	CGRYCG	2 cut(s)	673, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	1027
BstNI	CCWGG	2 cut(s)	23, 375
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	5 cut(s)	21, 373, 1038, 1075, 1076
BstSLI	GKGCMC	1 cut(s)	875
BstUI	CGCG	2 cut(s)	1114, 1126
BstV1I	GCAGC	3 cut(s)	241, 1039, 1068
BstV2I	GAAGAC	2 cut(s)	24, 745
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BstZI	CGGCCG	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	170, 676
BtsCI	GGATG	3 cut(s)	130, 606, 1059
BtsIMutI	CAGTG	3 cut(s)	338, 747, 1063
Cac8I	GCNNGC	1 cut(s)	1032
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	2 cut(s)	169, 988
Cfr9I	CCCGGG	1 cut(s)	1076
CseI	GACGC	1 cut(s)	1027
Csp6I	GTAC	1 cut(s)	744
CviAII	CATG	7 cut(s)	301, 523, 545, 616, 705, 766, 1092
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	6 cut(s)	120, 403, 489, 634, 642, 668
DpnII	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
EaeI	YGGCCR	1 cut(s)	674
EagI	CGGCCG	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	988
Eco52I	CGGCCG	1 cut(s)	674
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	21, 373
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	7 cut(s)	304, 526, 548, 619, 708, 769, 1095
FaqI	GGGAC	2 cut(s)	326, 812
FatI	CATG	7 cut(s)	300, 522, 544, 615, 704, 765, 1091
FauNDI	CATATG	1 cut(s)	593
Fnu4HI	GCNGC	3 cut(s)	230, 1028, 1082
FokI	GGATG	3 cut(s)	117, 613, 1046
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	230, 1028, 1082
FspBI	CTAG	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	230, 1028, 1082
HaeIII	GGCC	2 cut(s)	170, 676
HapII	CCGG	6 cut(s)	673, 688, 1022, 1040, 1077, 1085
HgaI	GACGC	1 cut(s)	1027
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	1019
Hin1II	CATG	7 cut(s)	304, 526, 548, 619, 708, 769, 1095
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HinfI	GANTC	5 cut(s)	127, 203, 314, 338, 473
HpaII	CCGG	6 cut(s)	673, 688, 1022, 1040, 1077, 1085
HphI	GGTGA	3 cut(s)	52, 403, 751
Hpy166II	GTNNAC	4 cut(s)	568, 721, 934, 1017
Hpy188I	TCNGA	3 cut(s)	419, 484, 961
Hpy188III	TCNNGA	5 cut(s)	80, 163, 784, 844, 1131
Hpy8I	GTNNAC	4 cut(s)	568, 721, 934, 1017
HpyAV	CCTTC	1 cut(s)	876
HpyCH4III	ACNGT	4 cut(s)	442, 515, 751, 861
HpyCH4V	TGCA	4 cut(s)	263, 499, 977, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1027
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	1019
Hsp92II	CATG	7 cut(s)	304, 526, 548, 619, 708, 769, 1095
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
LmnI	GCTCC	3 cut(s)	463, 647, 1024
Lsp1109I	GCAGC	3 cut(s)	241, 1039, 1068
LweI	GCATC	3 cut(s)	486, 964, 1068
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	89, 124, 175
MalI	GATC	6 cut(s)	120, 403, 489, 634, 642, 668
MboI	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	460, 875
MluCI	AATT	7 cut(s)	71, 366, 420, 478, 534, 553, 1045
MluI	ACGCGT	1 cut(s)	1112
MlyI	GAGTC	4 cut(s)	121, 197, 308, 482
MmeI	TCCRAC	1 cut(s)	843
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	3 cut(s)	99, 258, 537
MslI	CAYNNNNRTG	3 cut(s)	305, 592, 764
MspI	CCGG	6 cut(s)	673, 688, 1022, 1040, 1077, 1085
MspR9I	CCNGG	5 cut(s)	23, 375, 1040, 1077, 1078
MvaI	CCWGG	2 cut(s)	23, 375
MvnI	CGCG	2 cut(s)	1114, 1126
MwoI	GCNNNNNNNGC	1 cut(s)	1027
NciI	CCSGG	3 cut(s)	1040, 1077, 1078
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
NlaIII	CATG	7 cut(s)	304, 526, 548, 619, 708, 769, 1095
NlaIV	GGNNCC	2 cut(s)	459, 1070
NmuCI	GTSAC	3 cut(s)	89, 124, 175
NsbI	TGCGCA	1 cut(s)	357
NspI	RCATGY	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	231, 1029, 1083
PleI	GAGTC	4 cut(s)	121, 197, 308, 481
PpsI	GAGTC	4 cut(s)	121, 197, 308, 481
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	21, 373
PspGI	CCWGG	2 cut(s)	21, 373
PspN4I	GGNNCC	2 cut(s)	459, 1070
PspPI	GGNCC	2 cut(s)	169, 988
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
RseI	CAYNNNNRTG	3 cut(s)	305, 592, 764
SaqAI	TTAA	3 cut(s)	99, 258, 537
SatI	GCNGC	3 cut(s)	230, 1028, 1082
Sau3AI	GATC	6 cut(s)	118, 401, 487, 632, 640, 666
Sau96I	GGNCC	2 cut(s)	169, 988
SchI	GAGTC	4 cut(s)	121, 197, 308, 482
ScrFI	CCNGG	5 cut(s)	23, 375, 1040, 1077, 1078
SduI	GDGCHC	2 cut(s)	460, 875
SetI	ASST	9 cut(s)	24, 42, 96, 389, 565, 576, 791, 986, 1036
SfaNI	GCATC	3 cut(s)	486, 964, 1068
SinI	GGWCC	1 cut(s)	988
SmaI	CCCGGG	1 cut(s)	1078
SmiMI	CAYNNNNRTG	3 cut(s)	305, 592, 764
Sse9I	AATT	7 cut(s)	71, 366, 420, 478, 534, 553, 1045
SsiI	CCGC	1 cut(s)	1126
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	5 cut(s)	21, 373, 1038, 1075, 1076
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	442, 515, 751, 861
TaqI	TCGA	3 cut(s)	117, 639, 669
TaqII	GACCGA	1 cut(s)	976
TasI	AATT	7 cut(s)	71, 366, 420, 478, 534, 553, 1045
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	3 cut(s)	99, 258, 537
Tru9I	TTAA	3 cut(s)	99, 258, 537
TscAI	CASTG	3 cut(s)	338, 754, 1070
TseFI	GTSAC	3 cut(s)	89, 124, 175
TseI	GCWGC	3 cut(s)	229, 1027, 1081
Tsp45I	GTSAC	3 cut(s)	89, 124, 175
TspDTI	ATGAA	5 cut(s)	60, 165, 617, 632, 935
TspGWI	ACGGA	1 cut(s)	668
TspMI	CCCGGG	1 cut(s)	1076
TspRI	CASTG	3 cut(s)	338, 754, 1070
VpaK11BI	GGWCC	1 cut(s)	988
XapI	RAATTY	1 cut(s)	478
XceI	RCATGY	1 cut(s)	769
XmaI	CCCGGG	1 cut(s)	1076
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.