Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

60048812 .. 60051049

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATCGACCGGCCGTTGGCTTACCGAAAAGTTATGACGACATGGGATAAGTGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAGCGACGCCGTTAGAGGTGGGCACAGACAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGCTATAGCTGCTTCGATCACCATCGTCTTTGCGGCCACATGGTTGCAGTGTTGTGCGGTGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

157

Amino Acids

17.91

Weight (kDa)

6.64

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 134	5.8e-30	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	435, 459
AcoI	YGGCCR	2 cut(s)	11, 436
AcyI	GRCGYC	2 cut(s)	194, 356
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	371, 411
AluI	AGCT	2 cut(s)	371, 411
Alw26I	GTCTC	2 cut(s)	111, 161
AoxI	GGCC	2 cut(s)	11, 436
ApeKI	GCWGC	2 cut(s)	364, 411
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	88, 413
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	376, 398
BccI	CCATC	3 cut(s)	140, 341, 432
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	111, 161
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	3 cut(s)	365, 412, 436
BlsI	GCNGC	3 cut(s)	366, 413, 437
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	301, 405
BpiI	GAAGAC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	194, 356
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	376, 398
Bsh1285I	CGRYCG	2 cut(s)	10, 14
BshFI	GGCC	2 cut(s)	13, 438
BsiEI	CGRYCG	2 cut(s)	10, 14
BsiSI	CCGG	3 cut(s)	10, 359, 377
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	111, 161
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	13, 438
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	3, 418
BspACI	CCGC	2 cut(s)	435, 459
BspANI	GGCC	2 cut(s)	13, 438
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	3, 418
BssNI	GRCGYC	2 cut(s)	194, 356
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	2 cut(s)	194, 356
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	2 cut(s)	6, 421
BstMAI	GTCTC	2 cut(s)	111, 161
BstMBI	GATC	2 cut(s)	3, 418
BstMCI	CGRYCG	2 cut(s)	10, 14
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 402, 411
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	376, 398
BstV2I	GAAGAC	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	13, 438
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	2 cut(s)	400, 456
BtsIMutI	CAGTG	2 cut(s)	400, 456
Cac8I	GCNNGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	2 cut(s)	202, 364
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	42, 103, 442
CviJI	RGCY	6 cut(s)	13, 20, 223, 371, 411, 438
CviKI_1	RGCY	6 cut(s)	13, 20, 223, 371, 411, 438
CviQI	GTAC	1 cut(s)	81
DpnI	GATC	2 cut(s)	5, 420
DpnII	GATC	2 cut(s)	3, 418
EaeI	YGGCCR	2 cut(s)	11, 436
EagI	CGGCCG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EclXI	CGGCCG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	325
Eco52I	CGGCCG	1 cut(s)	11
FaeI	CATG	3 cut(s)	45, 106, 445
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	41, 102, 441
Fnu4HI	GCNGC	3 cut(s)	365, 412, 436
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	365, 412, 436
GluI	GCNGC	3 cut(s)	365, 412, 436
HaeIII	GGCC	2 cut(s)	13, 438
HapII	CCGG	3 cut(s)	10, 359, 377
HgaI	GACGC	2 cut(s)	202, 364
Hin1I	GRCGYC	2 cut(s)	194, 356
Hin1II	CATG	3 cut(s)	45, 106, 445
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HpaII	CCGG	3 cut(s)	10, 359, 377
HphI	GGTGA	2 cut(s)	88, 413
Hpy166II	GTNNAC	3 cut(s)	58, 271, 354
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	121, 181
Hpy8I	GTNNAC	3 cut(s)	58, 271, 354
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	213, 284
HpyCH4V	TGCA	3 cut(s)	314, 396, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 402, 411
Hsp92I	GRCGYC	2 cut(s)	194, 356
Hsp92II	CATG	3 cut(s)	45, 106, 445
Kzo9I	GATC	2 cut(s)	3, 418
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	8 cut(s)	23, 112, 156, 194, 279, 322, 372, 390
Lsp1109I	GCAGC	2 cut(s)	376, 398
LweI	GCATC	2 cut(s)	301, 405
MalI	GATC	2 cut(s)	5, 420
MboI	GATC	2 cut(s)	3, 418
MboII	GAAGA	2 cut(s)	82, 85
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	1 cut(s)	382
MnlI	CCTC	3 cut(s)	120, 196, 331
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	3 cut(s)	10, 359, 377
MspR9I	CCNGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	364, 402, 411
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	3, 418
NlaIII	CATG	3 cut(s)	45, 106, 445
NspI	RCATGY	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	366, 413, 437
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	3 cut(s)	365, 412, 436
Sau3AI	GATC	2 cut(s)	3, 418
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	207, 276, 323, 373, 413
SfaNI	GCATC	2 cut(s)	301, 405
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	435, 459
SspI	AATATT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	375
TaqI	TCGA	3 cut(s)	6, 236, 417
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	1 cut(s)	382
TauI	GCSGC	1 cut(s)	438
TscAI	CASTG	2 cut(s)	407, 456
TseI	GCWGC	2 cut(s)	364, 411
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	407, 456
VpaK11BI	GGWCC	1 cut(s)	325
XceI	RCATGY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.