Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

85212118 .. 85213272

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG621700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCACAGCATACAAAACCGTATAATCATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGAAAGGTGTGGACTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGAAGCAACAGAGTATGATGAGATCGACCGGTCGTTGGCTTCCCGGAAAGTTATGACGACATGGGATAAATGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGACAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTATCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGTCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCGGCACGATTGGGCTGCAAATTTGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

208

Amino Acids

24.1

Weight (kDa)

8.61

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	5 - 199	1.3e-51	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	573
AccII	CGCG	1 cut(s)	596
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	614
AcyI	GRCGYC	2 cut(s)	362, 524
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgeI	ACCGGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	88, 118
AluBI	AGCT	2 cut(s)	539, 624
AluI	AGCT	2 cut(s)	539, 624
Alw26I	GTCTC	2 cut(s)	279, 329
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	581
ApeKI	GCWGC	3 cut(s)	532, 586, 609
ApoI	RAATTY	1 cut(s)	614
AsiGI	ACCGGT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	4 cut(s)	193, 545, 582, 583
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	544, 573, 596
BccI	CCATC	2 cut(s)	308, 509
BceAI	ACGGC	1 cut(s)	349
BcgI	CGANNNNNNTGC	4 cut(s)	471, 505, 591, 625
BcnI	CCSGG	4 cut(s)	193, 545, 582, 583
BcoDI	GTCTC	2 cut(s)	279, 329
BfaI	CTAG	1 cut(s)	625
BisI	GCNGC	4 cut(s)	533, 587, 597, 610
BlsI	GCNGC	4 cut(s)	534, 588, 598, 611
Bme1390I	CCNGG	4 cut(s)	193, 545, 582, 583
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	4 cut(s)	193, 545, 582, 583
BmsI	GCATC	2 cut(s)	469, 573
BpiI	GAAGAC	1 cut(s)	250
BpuMI	CCSGG	4 cut(s)	193, 545, 582, 583
Bsa29I	ATCGAT	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	362, 524
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	489, 580, 581
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	489, 580, 581
BseGI	GGATG	2 cut(s)	111, 564
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	544, 573, 596
Bsh1236I	CGCG	1 cut(s)	596
Bsh1285I	CGRYCG	2 cut(s)	178, 182
BshNI	GGYRCC	1 cut(s)	573
BshTI	ACCGGT	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	38
BsiEI	CGRYCG	2 cut(s)	178, 182
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	4 cut(s)	178, 193, 545, 582
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	279, 329
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	137, 145, 171
BspACI	CCGC	1 cut(s)	596
BspDI	ATCGAT	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	1 cut(s)	575
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	489, 580, 581
BssMI	GATC	3 cut(s)	137, 145, 171
BssNI	GRCGYC	2 cut(s)	362, 524
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	2 cut(s)	362, 524
BstC8I	GCNNGC	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	111, 564
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	3 cut(s)	140, 148, 174
BstMAI	GTCTC	2 cut(s)	279, 329
BstMBI	GATC	3 cut(s)	137, 145, 171
BstMCI	CGRYCG	2 cut(s)	178, 182
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	4 cut(s)	191, 543, 580, 581
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	3 cut(s)	544, 573, 596
BstV2I	GAAGAC	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	111, 564
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	493
Cfr9I	CCCGGG	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	2 cut(s)	370, 602
Csp6I	GTAC	1 cut(s)	249
CspAI	ACCGGT	1 cut(s)	177
CviAII	CATG	5 cut(s)	28, 50, 121, 210, 271
CviJI	RGCY	6 cut(s)	188, 391, 539, 586, 609, 624
CviKI_1	RGCY	6 cut(s)	188, 391, 539, 586, 609, 624
CviQI	GTAC	1 cut(s)	249
DpnI	GATC	3 cut(s)	139, 147, 173
DpnII	GATC	3 cut(s)	137, 145, 171
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	581
FaeI	CATG	5 cut(s)	31, 53, 124, 213, 274
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	5 cut(s)	27, 49, 120, 209, 270
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	533, 587, 597, 610
FokI	GGATG	2 cut(s)	118, 551
Fsp4HI	GCNGC	4 cut(s)	533, 587, 597, 610
FspBI	CTAG	1 cut(s)	625
GluI	GCNGC	4 cut(s)	533, 587, 597, 610
HapII	CCGG	4 cut(s)	178, 193, 545, 582
HgaI	GACGC	2 cut(s)	370, 602
Hin1I	GRCGYC	2 cut(s)	362, 524
Hin1II	CATG	5 cut(s)	31, 53, 124, 213, 274
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HpaII	CCGG	4 cut(s)	178, 193, 545, 582
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	3 cut(s)	73, 226, 522
Hpy188I	TCNGA	2 cut(s)	466, 529
Hpy188III	TCNNGA	3 cut(s)	149, 289, 349
Hpy8I	GTNNAC	3 cut(s)	73, 226, 522
Hpy99I	CGWCG	2 cut(s)	364, 529
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	4 cut(s)	4, 482, 564, 612
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	2 cut(s)	362, 524
Hsp92II	CATG	5 cut(s)	31, 53, 124, 213, 274
Kzo9I	GATC	3 cut(s)	137, 145, 171
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	544, 573, 596
LweI	GCATC	2 cut(s)	469, 573
MaeI	CTAG	1 cut(s)	625
MaeII	ACGT	1 cut(s)	524
MalI	GATC	3 cut(s)	139, 147, 173
MboI	GATC	3 cut(s)	137, 145, 171
MboII	GAAGA	3 cut(s)	250, 253, 434
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	3 cut(s)	58, 550, 614
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	5 cut(s)	89, 128, 288, 499, 587
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	2 cut(s)	97, 269
MspI	CCGG	4 cut(s)	178, 193, 545, 582
MspR9I	CCNGG	4 cut(s)	193, 545, 582, 583
MvnI	CGCG	1 cut(s)	596
NciI	CCSGG	4 cut(s)	193, 545, 582, 583
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	3 cut(s)	137, 145, 171
NlaIII	CATG	5 cut(s)	31, 53, 124, 213, 274
NlaIV	GGNNCC	1 cut(s)	575
NspI	RCATGY	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	177
PkrI	GCNGC	4 cut(s)	534, 588, 598, 611
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	1 cut(s)	493
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	97, 269
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	4 cut(s)	533, 587, 597, 610
Sau3AI	GATC	3 cut(s)	137, 145, 171
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	4 cut(s)	193, 545, 582, 583
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	6 cut(s)	70, 81, 491, 527, 541, 626
SfaNI	GCATC	2 cut(s)	469, 573
SinI	GGWCC	1 cut(s)	493
SmaI	CCCGGG	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	97, 269
Sse9I	AATT	3 cut(s)	58, 550, 614
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	625
StyD4I	CCNGG	4 cut(s)	191, 543, 580, 581
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	38, 144, 174, 404
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	3 cut(s)	58, 550, 614
TauI	GCSGC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	3 cut(s)	532, 586, 609
TspDTI	ATGAA	3 cut(s)	122, 137, 440
TspMI	CCCGGG	1 cut(s)	581
TspRI	CASTG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	274
XmaI	CCCGGG	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	625
ZraI	GACGTC	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.