function) domain. TBL gene family has 46 members, two of which (TBR AT5G06700 and TBL3 AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff Wolf Scheible, 2010, personal communication)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990 |
| fragaria_vesca | FvH4_7g24620 |
| malus_domestica | MD01G1154500.v1.1 MD07G1223300.v1.1 |
| prunus_persica | Prupe.2G251900_v2.0.a1 |
| pyrus_communis | pycom01g17170 pycom07g20190 pycom07g20200 |
| rosa_chinensis | RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451 |
| rosa_laevigata | RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183 |
| rosa_multiflora | Rmu_sc0005656.1_g000014 |
| rosa_roxburghii | Rroxscaffold_4G00286550 |
| rosa_rugosa | Rorug01G0356900 |
| rosa_samantha | Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600 |
| rosa_wichuraiana | Rw1G010640 Rw1G032200 Rw6G015350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 762 |
| AatII | GACGTC | 2 cut(s) | 138, 186 |
| AccB1I | GGYRCC | 1 cut(s) | 787 |
| AccI | GTMKAC | 1 cut(s) | 835 |
| AciI | CCGC | 2 cut(s) | 407, 1229 |
| AclWI | GGATC | 7 cut(s) | 122, 486, 812, 970, 1058, 1151, 1361 |
| AcoI | YGGCCR | 1 cut(s) | 1004 |
| AcsI | RAATTY | 2 cut(s) | 20, 808 |
| AcvI | CACGTG | 1 cut(s) | 1422 |
| AcyI | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| AfaI | GTAC | 2 cut(s) | 125, 1075 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 262, 438, 654, 754, 1296 |
| AflIII | ACRYGT | 3 cut(s) | 1179, 1419, 1442 |
| AgeI | ACCGGT | 2 cut(s) | 226, 728 |
| AgsI | TTSAA | 8 cut(s) | 233, 293, 326, 589, 689, 721, 869, 913 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 139 |
| AjiI | CACGTC | 1 cut(s) | 397 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 587, 619 |
| AluBI | AGCT | 4 cut(s) | 367, 613, 717, 1119 |
| AluI | AGCT | 4 cut(s) | 367, 613, 717, 1119 |
| Alw26I | GTCTC | 4 cut(s) | 449, 972, 1104, 1154 |
| AlwI | GGATC | 7 cut(s) | 122, 486, 812, 970, 1058, 1151, 1361 |
| AoxI | GGCC | 1 cut(s) | 1004 |
| ApeKI | GCWGC | 1 cut(s) | 374 |
| ApoI | RAATTY | 2 cut(s) | 20, 808 |
| AsiGI | ACCGGT | 2 cut(s) | 226, 728 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 321, 532, 938, 1430 |
| AspLEI | GCGC | 1 cut(s) | 502 |
| AsuC2I | CCSGG | 2 cut(s) | 705, 1407 |
| AsuHPI | GGTGA | 1 cut(s) | 421 |
| AsuII | TTCGAA | 1 cut(s) | 33 |
| AsuNHI | GCTAGC | 1 cut(s) | 1091 |
| BaeGI | GKGCMC | 1 cut(s) | 790 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1429, 1462 |
| BanI | GGYRCC | 1 cut(s) | 787 |
| BbrPI | CACGTG | 1 cut(s) | 1422 |
| BbsI | GAAGAC | 6 cut(s) | 85, 138, 399, 736, 1075, 1394 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BccI | CCATC | 3 cut(s) | 152, 549, 1133 |
| BceAI | ACGGC | 2 cut(s) | 513, 1019 |
| BciVI | GTATCC | 1 cut(s) | 1400 |
| BcnI | CCSGG | 2 cut(s) | 705, 1407 |
| BcoDI | GTCTC | 4 cut(s) | 449, 972, 1104, 1154 |
| BfaI | CTAG | 2 cut(s) | 564, 1092 |
| BfmI | CTRYAG | 1 cut(s) | 1210 |
| BfuI | GTATCC | 1 cut(s) | 1400 |
| BisI | GCNGC | 2 cut(s) | 375, 407 |
| BlsI | GCNGC | 2 cut(s) | 376, 408 |
| Bme1390I | CCNGG | 2 cut(s) | 705, 1407 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 139 |
| BmgBI | CACGTC | 1 cut(s) | 397 |
| BmiI | GGNNCC | 3 cut(s) | 659, 699, 789 |
| BmrFI | CCNGG | 2 cut(s) | 705, 1407 |
| BmsI | GCATC | 2 cut(s) | 469, 1294 |
| BmtI | GCTAGC | 1 cut(s) | 1095 |
| BpiI | GAAGAC | 6 cut(s) | 85, 138, 399, 736, 1075, 1394 |
| BpmI | CTGGAG | 1 cut(s) | 571 |
| Bpu10I | CCTNAGC | 1 cut(s) | 614 |
| Bpu14I | TTCGAA | 1 cut(s) | 33 |
| BpuMI | CCSGG | 2 cut(s) | 705, 1407 |
| Bsa29I | ATCGAT | 1 cut(s) | 269 |
| BsaAI | YACGTR | 3 cut(s) | 1073, 1422, 1445 |
| BsaHI | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| BsaJI | CCNNGG | 1 cut(s) | 8 |
| BsaWI | WCCGGW | 6 cut(s) | 226, 431, 654, 728, 1258, 1296 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 426, 456, 1032, 1062 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 262, 438, 654, 754, 1296 |
| Bse118I | RCCGGY | 2 cut(s) | 226, 728 |
| Bse1I | ACTGG | 4 cut(s) | 320, 554, 890, 1007 |
| BseCI | ATCGAT | 1 cut(s) | 269 |
| BseDI | CCNNGG | 1 cut(s) | 8 |
| BseGI | GGATG | 3 cut(s) | 391, 460, 936 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 262, 438, 654, 754, 1296 |
| BseMII | CTCAG | 3 cut(s) | 264, 300, 849 |
| BseNI | ACTGG | 4 cut(s) | 320, 554, 890, 1007 |
| BseRI | GAGGAG | 3 cut(s) | 344, 1007, 1092 |
| BseSI | GKGCMC | 1 cut(s) | 790 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| Bsh1285I | CGRYCG | 1 cut(s) | 709 |
| BshFI | GGCC | 1 cut(s) | 1006 |
| BshNI | GGYRCC | 1 cut(s) | 787 |
| BshTI | ACCGGT | 2 cut(s) | 226, 728 |
| BshVI | ATCGAT | 1 cut(s) | 269 |
| BsiEI | CGRYCG | 1 cut(s) | 709 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 262, 438, 654, 754, 1296 |
| BsmAI | GTCTC | 4 cut(s) | 449, 972, 1104, 1154 |
| BsmBI | CGTCTC | 2 cut(s) | 449, 1154 |
| BsmI | GAATGC | 2 cut(s) | 422, 1243 |
| BsnI | GGCC | 1 cut(s) | 1006 |
| Bsp119I | TTCGAA | 1 cut(s) | 33 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp1407I | TGTACA | 1 cut(s) | 123 |
| BspACI | CCGC | 2 cut(s) | 407, 1229 |
| BspANI | GGCC | 1 cut(s) | 1006 |
| BspCNI | CTCAG | 3 cut(s) | 263, 299, 850 |
| BspDI | ATCGAT | 1 cut(s) | 269 |
| BspLI | GGNNCC | 3 cut(s) | 659, 699, 789 |
| BspOI | GCTAGC | 1 cut(s) | 1095 |
| BspPI | GGATC | 7 cut(s) | 122, 486, 812, 970, 1058, 1151, 1361 |
| BspT104I | TTCGAA | 1 cut(s) | 33 |
| BspT107I | GGYRCC | 1 cut(s) | 787 |
| BsrFI | RCCGGY | 2 cut(s) | 226, 728 |
| BsrGI | TGTACA | 1 cut(s) | 123 |
| BsrI | ACTGG | 4 cut(s) | 320, 554, 890, 1007 |
| BssAI | RCCGGY | 2 cut(s) | 226, 728 |
| BssECI | CCNNGG | 1 cut(s) | 8 |
| BssNAI | GTATAC | 1 cut(s) | 836 |
| BssNI | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| BssT1I | CCWWGG | 1 cut(s) | 8 |
| Bst1107I | GTATAC | 1 cut(s) | 836 |
| Bst4CI | ACNGT | 5 cut(s) | 68, 772, 845, 1081, 1218 |
| Bst6I | CTCTTC | 3 cut(s) | 113, 523, 1110 |
| BstACI | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| BstAUI | TGTACA | 1 cut(s) | 123 |
| BstBAI | YACGTR | 3 cut(s) | 1073, 1422, 1445 |
| BstBI | TTCGAA | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 1 cut(s) | 1093 |
| BstDEI | CTNAG | 4 cut(s) | 250, 286, 614, 858 |
| BstF5I | GGATG | 3 cut(s) | 391, 460, 936 |
| BstHHI | GCGC | 1 cut(s) | 502 |
| BstMAI | GTCTC | 4 cut(s) | 449, 972, 1104, 1154 |
| BstMCI | CGRYCG | 1 cut(s) | 709 |
| BstNSI | RCATGY | 2 cut(s) | 1099, 1183 |
| BstSCI | CCNGG | 2 cut(s) | 703, 1405 |
| BstSFI | CTRYAG | 1 cut(s) | 1210 |
| BstSLI | GKGCMC | 1 cut(s) | 790 |
| BstSNI | TACGTA | 1 cut(s) | 1073 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstV2I | GAAGAC | 6 cut(s) | 85, 138, 399, 736, 1075, 1394 |
| BstX2I | RGATCY | 1 cut(s) | 114 |
| BstYI | RGATCY | 1 cut(s) | 114 |
| BstZ17I | GTATAC | 1 cut(s) | 836 |
| Bsu15I | ATCGAT | 1 cut(s) | 269 |
| BsuI | GTATCC | 1 cut(s) | 1400 |
| BsuRI | GGCC | 1 cut(s) | 1006 |
| BsuTUI | ATCGAT | 1 cut(s) | 269 |
| BtgZI | GCGATG | 1 cut(s) | 130 |
| BtrI | CACGTC | 1 cut(s) | 397 |
| BtsCI | GGATG | 3 cut(s) | 391, 460, 936 |
| BtsIMutI | CAGTG | 2 cut(s) | 699, 1077 |
| Cac8I | GCNNGC | 1 cut(s) | 1093 |
| CfoI | GCGC | 1 cut(s) | 502 |
| Cfr10I | RCCGGY | 2 cut(s) | 226, 728 |
| ClaI | ATCGAT | 1 cut(s) | 269 |
| CseI | GACGC | 2 cut(s) | 466, 1357 |
| Csp6I | GTAC | 2 cut(s) | 124, 1074 |
| CspAI | ACCGGT | 2 cut(s) | 226, 728 |
| CviAII | CATG | 5 cut(s) | 121, 514, 875, 1096, 1180 |
| CviJI | RGCY | 6 cut(s) | 367, 613, 717, 1006, 1119, 1364 |
| CviKI_1 | RGCY | 6 cut(s) | 367, 613, 717, 1006, 1119, 1364 |
| CviQI | GTAC | 2 cut(s) | 124, 1074 |
| DdeI | CTNAG | 4 cut(s) | 250, 286, 614, 858 |
| DriI | GACNNNNNGTC | 1 cut(s) | 139 |
| EaeI | YGGCCR | 1 cut(s) | 1004 |
| Eam1104I | CTCTTC | 3 cut(s) | 113, 523, 1110 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 139 |
| EarI | CTCTTC | 3 cut(s) | 113, 523, 1110 |
| Eco105I | TACGTA | 1 cut(s) | 1073 |
| Eco130I | CCWWGG | 1 cut(s) | 8 |
| Eco72I | CACGTG | 1 cut(s) | 1422 |
| EcoRI | GAATTC | 1 cut(s) | 808 |
| EcoT14I | CCWWGG | 1 cut(s) | 8 |
| EcoT22I | ATGCAT | 1 cut(s) | 831 |
| ErhI | CCWWGG | 1 cut(s) | 8 |
| Esp3I | CGTCTC | 2 cut(s) | 449, 1154 |
| FaeI | CATG | 5 cut(s) | 124, 517, 878, 1099, 1183 |
| FatI | CATG | 5 cut(s) | 120, 513, 874, 1095, 1179 |
| FblI | GTMKAC | 1 cut(s) | 835 |
| Fnu4HI | GCNGC | 2 cut(s) | 375, 407 |
| FokI | GGATG | 3 cut(s) | 398, 447, 943 |
| Fsp4HI | GCNGC | 2 cut(s) | 375, 407 |
| FspBI | CTAG | 2 cut(s) | 564, 1092 |
| GlaI | GCGC | 1 cut(s) | 501 |
| GluI | GCNGC | 2 cut(s) | 375, 407 |
| GsuI | CTGGAG | 1 cut(s) | 571 |
| HaeIII | GGCC | 1 cut(s) | 1006 |
| HgaI | GACGC | 2 cut(s) | 466, 1357 |
| HhaI | GCGC | 1 cut(s) | 502 |
| Hin1I | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| Hin1II | CATG | 5 cut(s) | 124, 517, 878, 1099, 1183 |
| Hin6I | GCGC | 1 cut(s) | 500 |
| HinP1I | GCGC | 1 cut(s) | 500 |
| HincII | GTYRAC | 2 cut(s) | 883, 898 |
| HindII | GTYRAC | 2 cut(s) | 883, 898 |
| HindIII | AAGCTT | 1 cut(s) | 715 |
| HphI | GGTGA | 1 cut(s) | 421 |
| Hpy166II | GTNNAC | 8 cut(s) | 187, 429, 836, 883, 898, 1264, 1321, 1412 |
| Hpy188I | TCNGA | 6 cut(s) | 253, 546, 749, 814, 1291, 1331 |
| Hpy8I | GTNNAC | 8 cut(s) | 187, 429, 836, 883, 898, 1264, 1321, 1412 |
| Hpy99I | CGWCG | 5 cut(s) | 89, 185, 194, 382, 772 |
| HpyCH4III | ACNGT | 5 cut(s) | 68, 772, 845, 1081, 1218 |
| HpyCH4IV | ACGT | 8 cut(s) | 135, 183, 309, 396, 1072, 1236, 1421, 1444 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 513, 829, 1154 |
| HpyF3I | CTNAG | 4 cut(s) | 250, 286, 614, 858 |
| HpySE526I | ACGT | 8 cut(s) | 135, 183, 309, 396, 1072, 1236, 1421, 1444 |
| Hsp92I | GRCGYC | 3 cut(s) | 135, 183, 1349 |
| Hsp92II | CATG | 5 cut(s) | 124, 517, 878, 1099, 1183 |
| HspAI | GCGC | 1 cut(s) | 500 |
| LmnI | GCTCC | 1 cut(s) | 1354 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| LweI | GCATC | 2 cut(s) | 469, 1294 |
| MaeI | CTAG | 2 cut(s) | 564, 1092 |
| MaeII | ACGT | 8 cut(s) | 135, 183, 309, 396, 1072, 1236, 1421, 1444 |
| MaeIII | GTNAC | 3 cut(s) | 43, 505, 1237 |
| MflI | RGATCY | 1 cut(s) | 114 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MluCI | AATT | 5 cut(s) | 20, 258, 401, 596, 808 |
| MlyI | GAGTC | 5 cut(s) | 245, 278, 759, 869, 888 |
| MmeI | TCCRAC | 3 cut(s) | 585, 619, 1354 |
| Mph1103I | ATGCAT | 1 cut(s) | 831 |
| MroXI | GAANNNNTTC | 4 cut(s) | 321, 532, 938, 1430 |
| MseI | TTAA | 4 cut(s) | 303, 354, 840, 1251 |
| MslI | CAYNNNNRTG | 2 cut(s) | 512, 1184 |
| MspR9I | CCNGG | 2 cut(s) | 705, 1407 |
| Mva1269I | GAATGC | 2 cut(s) | 422, 1243 |
| NciI | CCSGG | 2 cut(s) | 705, 1407 |
| NheI | GCTAGC | 1 cut(s) | 1091 |
| NlaIII | CATG | 5 cut(s) | 124, 517, 878, 1099, 1183 |
| NlaIV | GGNNCC | 3 cut(s) | 659, 699, 789 |
| NmuCI | GTSAC | 2 cut(s) | 505, 1237 |
| NsiI | ATGCAT | 1 cut(s) | 831 |
| NspI | RCATGY | 2 cut(s) | 1099, 1183 |
| NspV | TTCGAA | 1 cut(s) | 33 |
| PciI | ACATGT | 1 cut(s) | 1179 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 186, 189 |
| PctI | GAATGC | 2 cut(s) | 422, 1243 |
| PdmI | GAANNNNTTC | 4 cut(s) | 321, 532, 938, 1430 |
| PfeI | GAWTC | 7 cut(s) | 266, 296, 533, 644, 668, 803, 1132 |
| PinAI | ACCGGT | 2 cut(s) | 226, 728 |
| PkrI | GCNGC | 2 cut(s) | 376, 408 |
| PleI | GAGTC | 5 cut(s) | 244, 278, 758, 868, 887 |
| PmaCI | CACGTG | 1 cut(s) | 1422 |
| PmlI | CACGTG | 1 cut(s) | 1422 |
| PpsI | GAGTC | 5 cut(s) | 244, 278, 758, 868, 887 |
| Ppu21I | YACGTR | 3 cut(s) | 1073, 1422, 1445 |
| PscI | ACATGT | 1 cut(s) | 1179 |
| PsiI | TTATAA | 1 cut(s) | 762 |
| PspCI | CACGTG | 1 cut(s) | 1422 |
| PspN4I | GGNNCC | 3 cut(s) | 659, 699, 789 |
| PsuI | RGATCY | 1 cut(s) | 114 |
| RsaI | GTAC | 2 cut(s) | 125, 1075 |
| RsaNI | GTAC | 2 cut(s) | 124, 1074 |
| RseI | CAYNNNNRTG | 2 cut(s) | 512, 1184 |
| SaqAI | TTAA | 4 cut(s) | 303, 354, 840, 1251 |
| SatI | GCNGC | 2 cut(s) | 375, 407 |
| SchI | GAGTC | 5 cut(s) | 245, 278, 759, 869, 888 |
| ScrFI | CCNGG | 2 cut(s) | 705, 1407 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 2 cut(s) | 469, 1294 |
| SfcI | CTRYAG | 1 cut(s) | 1210 |
| SfuI | TTCGAA | 1 cut(s) | 33 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 512, 1184 |
| SnaBI | TACGTA | 1 cut(s) | 1073 |
| Sse9I | AATT | 5 cut(s) | 20, 258, 401, 596, 808 |
| SsiI | CCGC | 2 cut(s) | 407, 1229 |
| SspI | AATATT | 1 cut(s) | 1060 |
| SspMI | CTAG | 2 cut(s) | 564, 1092 |
| StyD4I | CCNGG | 2 cut(s) | 703, 1405 |
| StyI | CCWWGG | 1 cut(s) | 8 |
| TaaI | ACNGT | 5 cut(s) | 68, 772, 845, 1081, 1218 |
| TaiI | ACGT | 8 cut(s) | 138, 186, 312, 399, 1075, 1239, 1424, 1447 |
| TaqI | TCGA | 9 cut(s) | 33, 239, 269, 338, 709, 753, 806, 969, 999 |
| TasI | AATT | 5 cut(s) | 20, 258, 401, 596, 808 |
| TatI | WGTACW | 1 cut(s) | 123 |
| TauI | GCSGC | 1 cut(s) | 409 |
| TfiI | GAWTC | 7 cut(s) | 266, 296, 533, 644, 668, 803, 1132 |
| Tru1I | TTAA | 4 cut(s) | 303, 354, 840, 1251 |
| Tru9I | TTAA | 4 cut(s) | 303, 354, 840, 1251 |
| TscAI | CASTG | 2 cut(s) | 699, 1084 |
| TseFI | GTSAC | 2 cut(s) | 505, 1237 |
| TseI | GCWGC | 1 cut(s) | 374 |
| Tsp45I | GTSAC | 2 cut(s) | 505, 1237 |
| TspDTI | ATGAA | 6 cut(s) | 65, 109, 144, 402, 947, 962 |
| TspGWI | ACGGA | 2 cut(s) | 395, 730 |
| TspRI | CASTG | 2 cut(s) | 699, 1084 |
| XapI | RAATTY | 2 cut(s) | 20, 808 |
| XceI | RCATGY | 2 cut(s) | 1099, 1183 |
| XmiI | GTMKAC | 1 cut(s) | 835 |
| XmnI | GAANNNNTTC | 4 cut(s) | 321, 532, 938, 1430 |
| XspI | CTAG | 2 cut(s) | 564, 1092 |
| ZraI | GACGTC | 2 cut(s) | 136, 184 |
| Zsp2I | ATGCAT | 1 cut(s) | 831 |