Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

63703915 .. 63704310

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG472200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGGCAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAATCAATGAAAGTGCCTGTTTACCTTCTCAATATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATAATGATGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCGGCACGATGGGGCTGCAAATTTGAGAGCTATAGTCAATCAAGTCGTGCCAGCTCTGATATTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

6.4

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 109	5.4e-26	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	303
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	3 cut(s)	269, 354, 378
AluI	AGCT	3 cut(s)	269, 354, 378
Alw26I	GTCTC	2 cut(s)	9, 59
Ama87I	CYCGRG	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	262, 316, 339
ApoI	RAATTY	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	3 cut(s)	275, 312, 313
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	274, 303, 326
BccI	CCATC	3 cut(s)	38, 239, 327
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	4 cut(s)	201, 235, 321, 355
BcnI	CCSGG	3 cut(s)	275, 312, 313
BcoDI	GTCTC	2 cut(s)	9, 59
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	4 cut(s)	263, 317, 327, 340
BlsI	GCNGC	4 cut(s)	264, 318, 328, 341
Bme1390I	CCNGG	3 cut(s)	275, 312, 313
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	3 cut(s)	275, 312, 313
BmsI	GCATC	3 cut(s)	199, 243, 303
BpuMI	CCSGG	3 cut(s)	275, 312, 313
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	219, 310, 311
Bse1I	ACTGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	219, 310, 311
BseGI	GGATG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	274, 303, 326
Bsh1236I	CGCG	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	257, 275, 312
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	9, 59
BsmFI	GGGAC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	110
BspACI	CCGC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	219, 310, 311
BssNI	GRCGYC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	267, 376
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	326
BstMAI	GTCTC	2 cut(s)	9, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	273, 310, 311
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	274, 303, 326
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	267, 376
Cfr13I	GGNCC	1 cut(s)	223
Cfr9I	CCCGGG	1 cut(s)	311
CseI	GACGC	2 cut(s)	100, 332
CviJI	RGCY	6 cut(s)	121, 269, 316, 339, 354, 378
CviKI_1	RGCY	6 cut(s)	121, 269, 316, 339, 354, 378
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	311
FaiI	YATR	6 cut(s)	15, 50, 143, 216, 228, 357
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	263, 317, 327, 340
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	263, 317, 327, 340
GluI	GCNGC	4 cut(s)	263, 317, 327, 340
HapII	CCGG	3 cut(s)	257, 275, 312
HgaI	GACGC	2 cut(s)	100, 332
Hin1I	GRCGYC	1 cut(s)	92
HpaII	CCGG	3 cut(s)	257, 275, 312
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	196, 382
Hpy188III	TCNNGA	2 cut(s)	19, 79
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	111, 182
HpyCH4V	TGCA	3 cut(s)	212, 294, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	3 cut(s)	274, 303, 326
LweI	GCATC	3 cut(s)	199, 243, 303
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	280, 344
MnlI	CCTC	3 cut(s)	18, 229, 317
MspI	CCGG	3 cut(s)	257, 275, 312
MspR9I	CCNGG	3 cut(s)	275, 312, 313
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	3 cut(s)	275, 312, 313
NlaIV	GGNNCC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	264, 318, 328, 341
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	223
SatI	GCNGC	4 cut(s)	263, 317, 327, 340
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	275, 312, 313
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	5 cut(s)	174, 221, 271, 356, 380
SfaNI	GCATC	3 cut(s)	199, 243, 303
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	280, 344
SsiI	CCGC	1 cut(s)	326
SspI	AATATT	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	273, 310, 311
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	280, 344
TauI	GCSGC	1 cut(s)	329
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	3 cut(s)	262, 316, 339
TspDTI	ATGAA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	344
XmaI	CCCGGG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.