Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

43347440 .. 43347985

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGAAAGGAGCAACAGAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGATAAGTGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCATATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGACAGAAGGCTCTTTGTGATTTCAAGTGACATAGTGAAAGCAATGAAAGTGCATGTTTACCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTCCACCGATTGCATCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

154

Amino Acids

17.68

Weight (kDa)

9.06

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	13 - 153	7.4e-31	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	439
AcyI	GRCGYC	2 cut(s)	251, 413
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	294
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw26I	GTCTC	2 cut(s)	168, 218
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	2 cut(s)	55, 238
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	168, 218
BfaI	CTAG	1 cut(s)	460
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	11
BsaHI	GRCGYC	2 cut(s)	251, 413
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	269
BseX3I	CGGCCG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	433
Bsh1285I	CGRYCG	2 cut(s)	67, 71
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	67, 71
BsiSI	CCGG	4 cut(s)	67, 82, 416, 434
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	168, 218
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	2 cut(s)	251, 413
BstACI	GRCGYC	2 cut(s)	251, 413
BstC8I	GCNNGC	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	168, 218
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	2 cut(s)	67, 71
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	2 cut(s)	163, 326
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	2 cut(s)	259, 421
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	4 cut(s)	23, 99, 160, 323
CviJI	RGCY	4 cut(s)	70, 77, 280, 428
CviKI_1	RGCY	4 cut(s)	70, 77, 280, 428
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	382
Eco52I	CGGCCG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	439
FaeI	CATG	4 cut(s)	26, 102, 163, 326
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	22, 98, 159, 322
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	4 cut(s)	67, 82, 416, 434
HgaI	GACGC	2 cut(s)	259, 421
Hin1I	GRCGYC	2 cut(s)	251, 413
Hin1II	CATG	4 cut(s)	26, 102, 163, 326
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HpaII	CCGG	4 cut(s)	67, 82, 416, 434
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	115, 328, 411
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	178, 238
Hpy8I	GTNNAC	3 cut(s)	115, 328, 411
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	270, 341
HpyCH4V	TGCA	3 cut(s)	322, 371, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
Hsp92I	GRCGYC	2 cut(s)	251, 413
Hsp92II	CATG	4 cut(s)	26, 102, 163, 326
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	41, 418
LpnPI	CCDG	7 cut(s)	80, 95, 169, 251, 379, 429, 447
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	139, 142
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	31, 439
MnlI	CCTC	2 cut(s)	177, 388
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	4 cut(s)	67, 82, 416, 434
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	421
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	4 cut(s)	26, 102, 163, 326
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	2 cut(s)	163, 326
PkrI	GCNGC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	382
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	3 cut(s)	333, 380, 430
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	31, 439
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	432
TaqI	TCGA	2 cut(s)	11, 63
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	2 cut(s)	31, 439
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	2 cut(s)	163, 326
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.