Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

28959015 .. 28960048

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTACAATGAGGACGTCAAATCCATCGCGGAATTCCCCTTCTCTTCAAGCCCAAAAGCGCAAGAACTCCGAGAAGAGCAAGAAACGAAACAGAGTTCCTCTGTTTCGAAACAGAGCGACTCTGTTTCCGAAATCCCGAACGGGGTTTTTCTAAGCGACACTTCAAGAACCCAATTGGAGGAAACCCAGATGGAGAATTCGGCTTCTGAAGAGACTCAAGAACCTACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGAGGATTATAATGCTACGGTGGAGTTCTACTGGGCACCATTTTTGGTGGAATTAGATTCAGATGATTCATTGATGCACAGCATACAAAACCGTATAATCAGGCCTAAATCGATTAAGAAGAATGGTAAAAATTGGAAAGGTGTGGATTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGGAGCAACAAAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGATAAATGGGTGGACAAAAATATTGACCCCCAATCCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGGCAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGCTTACCTTCTCAATATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATAATGATGCCAGAGCAGCAAGCTGACTCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCGGCACGATGGGGCTGCAAATTTGAGAGCTATAGTCAATCAAGTCGTGCCAGCTCTAATATTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

318

Amino Acids

36.42

Weight (kDa)

5.16

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	70 - 296	6.1e-50	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AatII	GACGTC	1 cut(s)	18
AccB1I	GGYRCC	2 cut(s)	298, 864
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	2 cut(s)	29, 887
AciI	CCGC	2 cut(s)	29, 887
AclWI	GGATC	3 cut(s)	237, 250, 481
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	3 cut(s)	32, 196, 905
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	2 cut(s)	15, 653
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	5 cut(s)	142, 178, 520, 586, 591
AgsI	TTSAA	5 cut(s)	48, 165, 424, 454, 950
AluBI	AGCT	3 cut(s)	830, 915, 939
AluI	AGCT	3 cut(s)	830, 915, 939
Alw26I	GTCTC	2 cut(s)	206, 620
AlwI	GGATC	3 cut(s)	237, 250, 481
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	365, 515
ApeKI	GCWGC	3 cut(s)	823, 877, 900
ApoI	RAATTY	3 cut(s)	32, 196, 905
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	784
AsuC2I	CCSGG	2 cut(s)	873, 874
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	784
BaeGI	GKGCMC	2 cut(s)	301, 671
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	298, 864
BbvI	GCAGC	3 cut(s)	835, 864, 887
BccI	CCATC	5 cut(s)	32, 184, 599, 800, 888
BceAI	ACGGC	2 cut(s)	502, 640
BcgI	CGANNNNNNTGC	4 cut(s)	762, 796, 882, 916
BcnI	CCSGG	2 cut(s)	873, 874
BcoDI	GTCTC	2 cut(s)	206, 620
BfmI	CTRYAG	1 cut(s)	916
BisI	GCNGC	4 cut(s)	824, 878, 888, 901
BlsI	GCNGC	4 cut(s)	825, 879, 889, 902
Bme1390I	CCNGG	2 cut(s)	873, 874
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	3 cut(s)	244, 300, 866
BmrFI	CCNGG	2 cut(s)	873, 874
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	4 cut(s)	327, 760, 804, 864
BmuI	ACTGGG	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	873, 874
Bsa29I	ATCGAT	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	15, 653
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	5 cut(s)	228, 585, 780, 871, 872
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 178, 520, 586, 591
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	299, 866
Bse3DI	GCAATG	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	5 cut(s)	228, 585, 780, 871, 872
BseGI	GGATG	2 cut(s)	447, 855
BseLI	CCNNNNNNNGG	5 cut(s)	142, 178, 520, 586, 591
BseMI	GCAATG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	299, 866
BseSI	GKGCMC	2 cut(s)	301, 671
BseX3I	CGGCCG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	835, 864, 887
Bsh1236I	CGCG	2 cut(s)	29, 887
Bsh1285I	CGRYCG	2 cut(s)	514, 518
BshFI	GGCC	2 cut(s)	367, 517
BshNI	GGYRCC	2 cut(s)	298, 864
BshVI	ATCGAT	1 cut(s)	374
BsiEI	CGRYCG	2 cut(s)	514, 518
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	3 cut(s)	514, 529, 873
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	5 cut(s)	142, 178, 520, 586, 591
BsmAI	GTCTC	2 cut(s)	206, 620
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	367, 517
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	872
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	301, 671
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	242, 473, 481, 507
BspACI	CCGC	2 cut(s)	29, 887
BspANI	GGCC	2 cut(s)	367, 517
BspDI	ATCGAT	1 cut(s)	374
BspFNI	CGCG	2 cut(s)	29, 887
BspLI	GGNNCC	3 cut(s)	244, 300, 866
BspPI	GGATC	3 cut(s)	237, 250, 481
BspQI	GCTCTTC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	107
BspT107I	GGYRCC	2 cut(s)	298, 864
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	513
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	299, 866
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	5 cut(s)	228, 585, 780, 871, 872
BssMI	GATC	4 cut(s)	242, 473, 481, 507
BssNI	GRCGYC	2 cut(s)	15, 653
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	283, 356
Bst6I	CTCTTC	3 cut(s)	49, 69, 204
BstACI	GRCGYC	2 cut(s)	15, 653
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	726, 828, 937
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	447, 855
BstFNI	CGCG	2 cut(s)	29, 887
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	245, 476, 484, 510
BstMAI	GTCTC	2 cut(s)	206, 620
BstMBI	GATC	4 cut(s)	242, 473, 481, 507
BstMCI	CGRYCG	2 cut(s)	514, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	871, 872
BstSFI	CTRYAG	1 cut(s)	916
BstSLI	GKGCMC	2 cut(s)	301, 671
BstUI	CGCG	2 cut(s)	29, 887
BstV1I	GCAGC	3 cut(s)	835, 864, 887
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZI	CGGCCG	1 cut(s)	515
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	367, 517
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	447, 855
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	3 cut(s)	726, 828, 937
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	784
Cfr9I	CCCGGG	1 cut(s)	872
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	2 cut(s)	661, 893
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	457, 546
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	244, 475, 483, 509
DpnII	GATC	4 cut(s)	242, 473, 481, 507
EaeI	YGGCCR	1 cut(s)	515
EagI	CGGCCG	1 cut(s)	515
Eam1104I	CTCTTC	3 cut(s)	49, 69, 204
EarI	CTCTTC	3 cut(s)	49, 69, 204
EclXI	CGGCCG	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	784
Eco52I	CGGCCG	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	872
EcoRI	GAATTC	2 cut(s)	32, 196
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	460, 549
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	2 cut(s)	456, 545
FauNDI	CATATG	1 cut(s)	434
Fnu4HI	GCNGC	4 cut(s)	824, 878, 888, 901
FokI	GGATG	2 cut(s)	454, 842
Fsp4HI	GCNGC	4 cut(s)	824, 878, 888, 901
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	4 cut(s)	824, 878, 888, 901
HaeIII	GGCC	2 cut(s)	367, 517
HapII	CCGG	3 cut(s)	514, 529, 873
HgaI	GACGC	2 cut(s)	661, 893
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	15, 653
Hin1II	CATG	2 cut(s)	460, 549
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	5 cut(s)	119, 214, 320, 329, 833
HpaII	CCGG	3 cut(s)	514, 529, 873
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	7 cut(s)	71, 130, 208, 260, 325, 757, 838
Hpy188III	TCNNGA	4 cut(s)	136, 165, 218, 640
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	3 cut(s)	49, 672, 743
HpyCH4III	ACNGT	2 cut(s)	283, 356
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	340, 773, 855, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	823
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	2 cut(s)	15, 653
Hsp92II	CATG	2 cut(s)	460, 549
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	242, 473, 481, 507
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	3 cut(s)	835, 864, 887
LweI	GCATC	4 cut(s)	327, 760, 804, 864
MaeII	ACGT	1 cut(s)	15
MalI	GATC	4 cut(s)	244, 475, 483, 509
MboI	GATC	4 cut(s)	242, 473, 481, 507
MboII	GAAGA	5 cut(s)	36, 86, 221, 247, 394
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	301, 671
MluCI	AATT	8 cut(s)	32, 173, 196, 261, 314, 394, 841, 905
MlyI	GAGTC	3 cut(s)	113, 208, 827
MnlI	CCTC	9 cut(s)	4, 109, 172, 257, 259, 425, 464, 790, 878
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	433
MspI	CCGG	3 cut(s)	514, 529, 873
MspR9I	CCNGG	2 cut(s)	873, 874
MunI	CAATTG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	29, 887
MwoI	GCNNNNNNNGC	1 cut(s)	823
NciI	CCSGG	2 cut(s)	873, 874
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	4 cut(s)	242, 473, 481, 507
NlaIII	CATG	2 cut(s)	460, 549
NlaIV	GGNNCC	3 cut(s)	244, 300, 866
NspV	TTCGAA	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	320, 329
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	825, 879, 889, 902
PleI	GAGTC	3 cut(s)	113, 208, 827
PpsI	GAGTC	3 cut(s)	113, 208, 827
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	244, 300, 866
PspPI	GGNCC	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	433
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	824, 878, 888, 901
Sau3AI	GATC	4 cut(s)	242, 473, 481, 507
Sau96I	GGNCC	1 cut(s)	784
SchI	GAGTC	3 cut(s)	113, 208, 827
ScrFI	CCNGG	2 cut(s)	873, 874
SduI	GDGCHC	2 cut(s)	301, 671
SfaNI	GCATC	4 cut(s)	327, 760, 804, 864
SfcI	CTRYAG	1 cut(s)	916
SfuI	TTCGAA	1 cut(s)	107
SinI	GGWCC	1 cut(s)	784
SmaI	CCCGGG	1 cut(s)	874
SmiMI	CAYNNNNRTG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	8 cut(s)	32, 173, 196, 261, 314, 394, 841, 905
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	2 cut(s)	29, 887
SspI	AATATT	3 cut(s)	571, 742, 946
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	871, 872
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	283, 356
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	5 cut(s)	107, 374, 480, 510, 695
TaqII	GACCGA	1 cut(s)	772
TasI	AATT	8 cut(s)	32, 173, 196, 261, 314, 394, 841, 905
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	2 cut(s)	320, 329
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	866
TseI	GCWGC	3 cut(s)	823, 877, 900
TspDTI	ATGAA	4 cut(s)	321, 458, 473, 731
TspGWI	ACGGA	1 cut(s)	574
TspMI	CCCGGG	1 cut(s)	872
TspRI	CASTG	1 cut(s)	866
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	784
XapI	RAATTY	3 cut(s)	32, 196, 905
XmaI	CCCGGG	1 cut(s)	872
XmnI	GAANNNNTTC	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.