Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

22363439 .. 22364023

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAGCTACCTCGCAGAAAAACTCTCTCTCTCTCCGTATCTGCGGCAATGAAGGTACGCAAGAACAATAACCTCTCCGTCTTCGTCGTCGTCTTTTCGGTCTTCCTCTTCGGGGTGTTCATGTACAATGAGGACGTGAAATCCATTGCTGAATTTCCATTCTCGAGCCACAAAGCTCAAGAATTCCAGGAAGAACTACAGTCGTCGAAACAGAGCGACCCGGTTCAAGAAACGAAACAGACCGACTCTGTTCAGGAAACCCACAACAGAGTGTCTCTGAGCTCGAGAACCCAACTGGAAGAAACCCATTTGGAGAATCACAATTCAGAGGAAACCCAGTTAGAAAATCACAATACAGAGGAAACCCAGTTGGAGAATCACAGTTCAGAAGAAACCCAGTTGGAGAACAACAATTCGGATGAAACCCAAGAGCCGGTTGATCTGATCAATCCATCGTCGAACAACACGAAGATCAGAAGATTGAATTGTTGGGTTCTTCTCAGGAAGAAGAGGAAGAGGAGGAGATTGAACTGCCGCCGGAAGATTGCGATTTGTTCAACGGAGATTGGGTTATCGATCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

195

Amino Acids

22.58

Weight (kDa)

7.03

Isoelectric Point (pI)

71.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 535
AclWI	GGATC	1 cut(s)	571
AcsI	RAATTY	2 cut(s)	152, 182
AfaI	GTAC	2 cut(s)	57, 125
AfiI	CCNNNNNNNGG	2 cut(s)	112, 433
AgsI	TTSAA	4 cut(s)	227, 484, 529, 558
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	7, 176, 282
AluI	AGCT	3 cut(s)	7, 176, 282
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	2 cut(s)	163, 283
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	152, 182
AsuC2I	CCSGG	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	163, 283
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	73, 94
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	460
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	5, 45, 535
BlsI	GCNGC	3 cut(s)	6, 46, 536
Bme1390I	CCNGG	2 cut(s)	188, 221
BmeT110I	CYCGRG	2 cut(s)	163, 283
BmgBI	CACGTC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	188, 221
BmrI	ACTGGG	3 cut(s)	331, 361, 391
BmuI	ACTGGG	3 cut(s)	331, 361, 391
BpiI	GAAGAC	2 cut(s)	73, 94
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 433
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	4 cut(s)	300, 337, 367, 397
Bse3DI	GCAATG	2 cut(s)	54, 144
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	575
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	112, 433
BseMI	GCAATG	2 cut(s)	54, 144
BseMII	CTCAG	2 cut(s)	269, 514
BseNI	ACTGG	4 cut(s)	300, 337, 367, 397
BseRI	GAGGAG	2 cut(s)	532, 535
BseXI	GCAGC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	2 cut(s)	163, 283
BsiSI	CCGG	4 cut(s)	221, 434, 538, 580
BslI	CCNNNNNNNGG	2 cut(s)	112, 433
BsmAI	GTCTC	1 cut(s)	279
BsoBI	CYCGRG	2 cut(s)	163, 283
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	439, 444, 471, 576
BspACI	CCGC	2 cut(s)	44, 535
BspCNI	CTCAG	2 cut(s)	270, 513
BspDI	ATCGAT	1 cut(s)	575
BspPI	GGATC	1 cut(s)	571
BsrDI	GCAATG	2 cut(s)	54, 144
BsrFI	RCCGGY	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	4 cut(s)	300, 337, 367, 397
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	4 cut(s)	439, 444, 471, 576
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	201, 383
Bst6I	CTCTTC	3 cut(s)	113, 503, 509
BstAUI	TGTACA	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	278, 500
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	442, 447, 474, 579
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	4 cut(s)	439, 444, 471, 576
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	186, 219
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	2 cut(s)	73, 94
Bsu15I	ATCGAT	1 cut(s)	575
BsuTUI	ATCGAT	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	56, 124
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	7, 168, 176, 282, 433
CviKI_1	RGCY	5 cut(s)	7, 168, 176, 282, 433
CviQI	GTAC	2 cut(s)	56, 124
DdeI	CTNAG	2 cut(s)	278, 500
DpnI	GATC	4 cut(s)	441, 446, 473, 578
DpnII	GATC	4 cut(s)	439, 444, 471, 576
Eam1104I	CTCTTC	3 cut(s)	113, 503, 509
EarI	CTCTTC	3 cut(s)	113, 503, 509
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	163, 283
EcoICRI	GAGCTC	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FatI	CATG	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	5, 45, 535
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	5, 45, 535
GluI	GCNGC	3 cut(s)	5, 45, 535
HapII	CCGG	4 cut(s)	221, 434, 538, 580
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	3 cut(s)	245, 316, 376
HpaII	CCGG	4 cut(s)	221, 434, 538, 580
Hpy188I	TCNGA	6 cut(s)	279, 328, 388, 418, 444, 476
Hpy188III	TCNNGA	6 cut(s)	163, 179, 227, 254, 285, 502
Hpy99I	CGWCG	4 cut(s)	89, 92, 208, 460
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	201, 383
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	278, 500
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	4 cut(s)	439, 444, 471, 576
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	135
MalI	GATC	4 cut(s)	441, 446, 473, 578
MboI	GATC	4 cut(s)	439, 444, 471, 576
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	5 cut(s)	152, 182, 322, 412, 484
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	351, 381
MnlI	CCTC	9 cut(s)	21, 83, 116, 124, 322, 352, 504, 510, 513
MspI	CCGG	4 cut(s)	221, 434, 538, 580
MspR9I	CCNGG	2 cut(s)	188, 221
MvaI	CCWGG	1 cut(s)	188
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	439, 444, 471, 576
NlaIII	CATG	1 cut(s)	124
PaeR7I	CTCGAG	2 cut(s)	163, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	316, 376
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	6, 46, 536
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
RsaI	GTAC	2 cut(s)	57, 125
RsaNI	GTAC	2 cut(s)	56, 124
SacI	GAGCTC	1 cut(s)	284
SatI	GCNGC	3 cut(s)	5, 45, 535
Sau3AI	GATC	4 cut(s)	439, 444, 471, 576
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	188, 221
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	9, 13, 57, 75, 138, 178, 284
SfcI	CTRYAG	1 cut(s)	197
Sfr274I	CTCGAG	2 cut(s)	163, 283
SlaI	CTCGAG	2 cut(s)	163, 283
SmlI	CTYRAG	3 cut(s)	163, 177, 283
SmoI	CTYRAG	3 cut(s)	163, 177, 283
Sse9I	AATT	5 cut(s)	152, 182, 322, 412, 484
SsiI	CCGC	2 cut(s)	44, 535
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	186, 219
TaaI	ACNGT	2 cut(s)	201, 383
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	5 cut(s)	164, 206, 284, 458, 575
TaqII	GACCGA	2 cut(s)	88, 257
TasI	AATT	5 cut(s)	152, 182, 322, 412, 484
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	47, 537
TfiI	GAWTC	2 cut(s)	316, 376
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	65, 109, 435
TspGWI	ACGGA	3 cut(s)	25, 67, 575
XapI	RAATTY	2 cut(s)	152, 182
XhoI	CTCGAG	2 cut(s)	163, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.