Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

60261408 .. 60264483

Gene Structure 3076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGAAAGGTGTGGATTACCTCATTTTCAACACATACAAATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGGAGCAACAAAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGATAAGTGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCCTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAGGTGGGCACAGACAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGCCCAGCTCCTCCTTATCCACTTCCCAATCTCTCGGCGGCACCTGTCTCACCACCAGCGGGCTGGCCCAGACCGTCTCCAACGGCTCCGGAATATTCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

216

Amino Acids

24.56

Weight (kDa)

9.15

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	4 - 181	1.6e-43	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	2 cut(s)	581, 602
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	335, 497
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	157, 602
AgsI	TTSAA	2 cut(s)	61, 91
AluBI	AGCT	2 cut(s)	512, 551
AluI	AGCT	2 cut(s)	512, 551
Alw26I	GTCTC	4 cut(s)	252, 302, 595, 624
AlwI	GGATC	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	631
AoxI	GGCC	2 cut(s)	152, 608
ApeKI	GCWGC	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	466, 609
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	229, 585
AvaII	GGWCC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	2 cut(s)	281, 482
BceAI	ACGGC	3 cut(s)	139, 322, 642
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	4 cut(s)	252, 302, 595, 624
BisI	GCNGC	2 cut(s)	506, 582
BlsI	GCNGC	2 cut(s)	507, 583
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	466, 609
BmiI	GGNNCC	2 cut(s)	585, 630
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	442, 546
BpiI	GAAGAC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	11
BsaHI	GRCGYC	2 cut(s)	335, 497
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	2 cut(s)	165, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 602
Bse118I	RCCGGY	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	631
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	84, 537
BseLI	CCNNNNNNNGG	2 cut(s)	157, 602
BseMI	GCAATG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	240, 543
BseSI	GKGCMC	1 cut(s)	353
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	517
BseYI	CCCAGC	1 cut(s)	547
Bsh1285I	CGRYCG	2 cut(s)	151, 155
BshFI	GGCC	2 cut(s)	154, 610
BshNI	GGYRCC	1 cut(s)	583
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	151, 155
BsiSI	CCGG	5 cut(s)	151, 166, 500, 518, 632
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	157, 602
BsmAI	GTCTC	4 cut(s)	252, 302, 595, 624
BsmBI	CGTCTC	1 cut(s)	624
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	154, 610
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	110, 118, 144
BspACI	CCGC	2 cut(s)	581, 602
BspANI	GGCC	2 cut(s)	154, 610
BspDI	ATCGAT	1 cut(s)	11
BspEI	TCCGGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	585, 630
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	110, 118, 144
BssNI	GRCGYC	2 cut(s)	335, 497
Bst4CI	ACNGT	1 cut(s)	618
BstACI	GRCGYC	2 cut(s)	335, 497
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	510, 604, 608
BstF5I	GGATG	2 cut(s)	84, 537
BstKTI	GATC	3 cut(s)	113, 121, 147
BstMAI	GTCTC	4 cut(s)	252, 302, 595, 624
BstMBI	GATC	3 cut(s)	110, 118, 144
BstMCI	CGRYCG	2 cut(s)	151, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 543
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	606
BstZI	CGGCCG	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	154, 610
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	84, 537
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	510, 604, 608
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	466, 609
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	2 cut(s)	343, 505
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	23, 94, 183, 244
CviJI	RGCY	8 cut(s)	154, 161, 364, 512, 551, 606, 610, 629
CviKI_1	RGCY	8 cut(s)	154, 161, 364, 512, 551, 606, 610, 629
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	3 cut(s)	112, 120, 146
DpnII	GATC	3 cut(s)	110, 118, 144
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	466
Eco52I	CGGCCG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	4 cut(s)	26, 97, 186, 247
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	22, 93, 182, 243
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	506, 582
FokI	GGATG	2 cut(s)	91, 524
Fsp4HI	GCNGC	2 cut(s)	506, 582
GluI	GCNGC	2 cut(s)	506, 582
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	154, 610
HapII	CCGG	5 cut(s)	151, 166, 500, 518, 632
HgaI	GACGC	2 cut(s)	343, 505
Hin1I	GRCGYC	2 cut(s)	335, 497
Hin1II	CATG	4 cut(s)	26, 97, 186, 247
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HpaII	CCGG	5 cut(s)	151, 166, 500, 518, 632
HphI	GGTGA	2 cut(s)	229, 585
Hpy166II	GTNNAC	3 cut(s)	199, 412, 495
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	3 cut(s)	262, 322, 632
Hpy8I	GTNNAC	3 cut(s)	199, 412, 495
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	354, 425
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4V	TGCA	2 cut(s)	455, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 543
Hsp92I	GRCGYC	2 cut(s)	335, 497
Hsp92II	CATG	4 cut(s)	26, 97, 186, 247
Kpn2I	TCCGGA	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	110, 118, 144
LmnI	GCTCC	4 cut(s)	125, 502, 556, 634
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	2 cut(s)	442, 546
MalI	GATC	3 cut(s)	112, 120, 146
MboI	GATC	3 cut(s)	110, 118, 144
MboII	GAAGA	2 cut(s)	223, 226
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	2 cut(s)	31, 523
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	6 cut(s)	62, 101, 261, 337, 472, 564
MroI	TCCGGA	1 cut(s)	631
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	15, 646
MslI	CAYNNNNRTG	2 cut(s)	70, 242
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	5 cut(s)	151, 166, 500, 518, 632
MspR9I	CCNGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	505, 543
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	3 cut(s)	110, 118, 144
NlaIII	CATG	4 cut(s)	26, 97, 186, 247
NlaIV	GGNNCC	2 cut(s)	585, 630
NmeAIII	GCCGAG	1 cut(s)	557
NspI	RCATGY	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	507, 583
PspFI	CCCAGC	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	585, 630
PspPI	GGNCC	2 cut(s)	466, 609
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	70, 242
SaqAI	TTAA	2 cut(s)	15, 646
SatI	GCNGC	2 cut(s)	506, 582
Sau3AI	GATC	3 cut(s)	110, 118, 144
Sau96I	GGNCC	2 cut(s)	466, 609
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	8 cut(s)	43, 54, 348, 417, 464, 514, 553, 589
SfaNI	GCATC	2 cut(s)	442, 546
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	2 cut(s)	70, 242
Sse9I	AATT	2 cut(s)	31, 523
SsiI	CCGC	2 cut(s)	581, 602
SspI	AATATT	2 cut(s)	208, 638
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	11, 117, 147, 377
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	2 cut(s)	31, 523
TauI	GCSGC	1 cut(s)	584
Tru1I	TTAA	2 cut(s)	15, 646
Tru9I	TTAA	2 cut(s)	15, 646
TscAI	CASTG	1 cut(s)	548
TseI	GCWGC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	95, 110, 413
TspRI	CASTG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	466
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.