Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

63703277 .. 63703573

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG472100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTACAATGAGGACGTCAAATCCATCGCGGAATTCCCCTTCTCTTCAAGCCCAAAAGCGCAAGAACTCCGAGAAGAGCAAGAAACGAAACAGAGTTCCTCTGTTTCGAAACAGAGCGACTCTGTTTCCGAAATCCCGAACGGGGTTTTTCTAAGCGACACTTCAAGAACCCAATTGGAGGAAACCCAGATGCAGAATTCGGCTTCTGAAGAGACTCAAGAACCTGTGGAGCTGGAAACGATCATGGAAGAGAAAGACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

4.06

Isoelectric Point (pI)

75.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	268, 281
AcsI	RAATTY	2 cut(s)	32, 196
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	142, 178
AgsI	TTSAA	2 cut(s)	48, 165
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	268, 281
ApoI	RAATTY	2 cut(s)	32, 196
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	273
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	275
BmsI	GCATC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 178
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	142, 178
Bsh1236I	CGCG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	142, 178
BsmAI	GTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	240, 273
BspACI	CCGC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	268, 281
BspQI	GCTCTTC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	240, 273
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	49, 69, 204, 243
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	243, 276
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	240, 273
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	3 cut(s)	51, 203, 232
CviKI_1	RGCY	3 cut(s)	51, 203, 232
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	242, 275
DpnII	GATC	2 cut(s)	240, 273
Eam1104I	CTCTTC	4 cut(s)	49, 69, 204, 243
EarI	CTCTTC	4 cut(s)	49, 69, 204, 243
Eco130I	CCWWGG	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	228
EcoRI	GAATTC	2 cut(s)	32, 196
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	2 cut(s)	119, 214
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	4 cut(s)	71, 130, 208, 291
Hpy188III	TCNNGA	3 cut(s)	136, 165, 218
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	240, 273
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	200, 218, 237
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	242, 275
MboI	GATC	2 cut(s)	240, 273
MboII	GAAGA	5 cut(s)	36, 86, 221, 260, 278
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	4 cut(s)	32, 173, 196, 292
MlyI	GAGTC	2 cut(s)	113, 208
MnlI	CCTC	4 cut(s)	4, 109, 172, 288
MunI	CAATTG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	29
NdeII	GATC	2 cut(s)	240, 273
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	69
PleI	GAGTC	2 cut(s)	113, 208
PpsI	GAGTC	2 cut(s)	113, 208
PspN4I	GGNNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	240, 273
SchI	GAGTC	2 cut(s)	113, 208
SetI	ASST	4 cut(s)	18, 226, 234, 261
SfaNI	GCATC	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	32, 173, 196, 292
SsiI	CCGC	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	259
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	32, 173, 196, 292
TatI	WGTACW	1 cut(s)	3
XapI	RAATTY	2 cut(s)	32, 196
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.