Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

25815685 .. 25816305

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG249300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGAGCCGCAAGAACAATAATCTACCAATCTTCGTCGAGTTCTTCTCGAATTTTTTTTTTCTGTTTGGGATTTTCATGTACAATGAGGACGTCAAATCCATCGCGGAATTCCCCTTCTCTTCAAGCCCAAAAGCGCAAGAACTCCGAGAAGAGCAAGAAACGAAACAGAGTTCCTCTGTTTCGAAACAGAGCGACTCTGTTTCCGAAATCCCGAACGGGGTTTTTCTAAGCGACACTTCAAGAACCCAATTGGAGGAAACCCAGATGCAGAATTCGGCTTCTGAAGAGACTCAAGAACCTGTGGAGCTGGAAACGATCATGGAAGAGAAAGACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

4.28

Isoelectric Point (pI)

62.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	10, 107
AclWI	GGATC	2 cut(s)	346, 359
AcsI	RAATTY	3 cut(s)	52, 110, 274
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	220, 256
AgsI	TTSAA	2 cut(s)	126, 243
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	346, 359
ApoI	RAATTY	3 cut(s)	52, 110, 274
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	351
BccI	CCATC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 256
BseDI	CCNNGG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	220, 256
Bsh1236I	CGCG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	220, 256
BsmAI	GTCTC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	318, 351
BspACI	CCGC	2 cut(s)	10, 107
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	346, 359
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	318, 351
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	337
Bst6I	CTCTTC	4 cut(s)	127, 147, 282, 321
BstACI	GRCGYC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	321, 354
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	318, 351
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	79, 322
CviJI	RGCY	4 cut(s)	9, 129, 281, 310
CviKI_1	RGCY	4 cut(s)	9, 129, 281, 310
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	320, 353
DpnII	GATC	2 cut(s)	318, 351
Eam1104I	CTCTTC	4 cut(s)	127, 147, 282, 321
EarI	CTCTTC	4 cut(s)	127, 147, 282, 321
Eco130I	CCWWGG	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	306
EcoRI	GAATTC	2 cut(s)	110, 274
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	82, 325
FaiI	YATR	2 cut(s)	80, 323
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	78, 321
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	82, 325
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	2 cut(s)	197, 292
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	149, 208, 286, 369
Hpy188III	TCNNGA	4 cut(s)	49, 214, 243, 296
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	82, 325
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	318, 351
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	3 cut(s)	278, 296, 315
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	1 cut(s)	93
MalI	GATC	2 cut(s)	320, 353
MboI	GATC	2 cut(s)	318, 351
MboII	GAAGA	8 cut(s)	16, 25, 37, 114, 164, 299, 338, 356
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	5 cut(s)	52, 110, 251, 274, 370
MlyI	GAGTC	2 cut(s)	191, 286
MnlI	CCTC	4 cut(s)	82, 187, 250, 366
MunI	CAATTG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	107
NdeII	GATC	2 cut(s)	318, 351
NlaIII	CATG	2 cut(s)	82, 325
NlaIV	GGNNCC	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	191, 286
PpsI	GAGTC	2 cut(s)	191, 286
PspN4I	GGNNCC	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	318, 351
SchI	GAGTC	2 cut(s)	191, 286
SetI	ASST	4 cut(s)	96, 304, 312, 339
SfaNI	GCATC	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	5 cut(s)	52, 110, 251, 274, 370
SsiI	CCGC	2 cut(s)	10, 107
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	39, 50, 185
TasI	AATT	5 cut(s)	52, 110, 251, 274, 370
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	17, 67
XapI	RAATTY	3 cut(s)	52, 110, 274
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.