Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

77141635 .. 77143373

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACGACGAGCTCCGGTGACGGAGATGGAGATGATTCATTGATGCACAGCATAAAAAACCGTATAATCATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGAAAGGTGTGGATTACCTCATTTTCAACACATACAAATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGGAGCAACAGAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGGTAAACGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCCTCTTCATATCAAGAGCATGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAGGTGGGGACAGACAGAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTTGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCTGCGCGATTGGGCTGCAAATTTGAGAGCTATAGTCAATCAAGTCGTGCCAGCTCTGATATTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

236

Amino Acids

26.86

Weight (kDa)

8.51

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	16 - 213	4.5e-51	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	615
AccII	CGCG	1 cut(s)	643
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	656
AcyI	GRCGYC	2 cut(s)	404, 566
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	130, 160, 701
AluBI	AGCT	4 cut(s)	12, 581, 666, 690
AluI	AGCT	4 cut(s)	12, 581, 666, 690
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	321, 371
AlwI	GGATC	1 cut(s)	187
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	574, 628, 638, 651
ApoI	RAATTY	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	3 cut(s)	587, 624, 625
AsuHPI	GGTGA	2 cut(s)	29, 298
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	586, 615, 625, 638
BccI	CCATC	3 cut(s)	20, 350, 551
BceAI	ACGGC	2 cut(s)	208, 391
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BcnI	CCSGG	3 cut(s)	587, 624, 625
BcoDI	GTCTC	2 cut(s)	321, 371
BfmI	CTRYAG	1 cut(s)	667
BisI	GCNGC	4 cut(s)	575, 629, 639, 652
BlsI	GCNGC	4 cut(s)	576, 630, 640, 653
Bme1390I	CCNGG	3 cut(s)	587, 624, 625
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	3 cut(s)	587, 624, 625
BmsI	GCATC	3 cut(s)	33, 511, 615
BpiI	GAAGAC	1 cut(s)	292
BpuMI	CCSGG	3 cut(s)	587, 624, 625
Bsa29I	ATCGAT	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	404, 566
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	531, 622, 623
BsaWI	WCCGGW	2 cut(s)	14, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	531, 622, 623
BseGI	GGATG	2 cut(s)	153, 606
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	309
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	586, 615, 625, 638
Bsh1236I	CGCG	1 cut(s)	643
Bsh1285I	CGRYCG	2 cut(s)	220, 224
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	615
BshVI	ATCGAT	1 cut(s)	80
BsiEI	CGRYCG	2 cut(s)	220, 224
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	6 cut(s)	15, 220, 235, 569, 587, 624
BslFI	GGGAC	2 cut(s)	359, 433
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	321, 371
BsmFI	GGGAC	2 cut(s)	359, 433
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	179, 187, 213
BspANI	GGCC	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	531, 622, 623
BssMI	GATC	3 cut(s)	179, 187, 213
BssNI	GRCGYC	2 cut(s)	404, 566
BssT1I	CCWWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	404, 566
BstC8I	GCNNGC	2 cut(s)	579, 688
BstF5I	GGATG	2 cut(s)	153, 606
BstFNI	CGCG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	3 cut(s)	182, 190, 216
BstMAI	GTCTC	2 cut(s)	321, 371
BstMBI	GATC	3 cut(s)	179, 187, 213
BstMCI	CGRYCG	2 cut(s)	220, 224
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	585, 622, 623
BstSFI	CTRYAG	1 cut(s)	667
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	4 cut(s)	586, 615, 625, 638
BstV2I	GAAGAC	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	153, 606
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	2 cut(s)	579, 688
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	535
Cfr9I	CCCGGG	1 cut(s)	623
ClaI	ATCGAT	1 cut(s)	80
CseI	GACGC	3 cut(s)	412, 574, 644
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	6 cut(s)	70, 92, 163, 252, 313, 337
CviJI	RGCY	9 cut(s)	12, 223, 230, 433, 581, 628, 651, 666, 690
CviKI_1	RGCY	9 cut(s)	12, 223, 230, 433, 581, 628, 651, 666, 690
CviQI	GTAC	1 cut(s)	291
DpnI	GATC	3 cut(s)	181, 189, 215
DpnII	GATC	3 cut(s)	179, 187, 213
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	535
Eco52I	CGGCCG	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	6 cut(s)	73, 95, 166, 255, 316, 340
FaqI	GGGAC	2 cut(s)	359, 433
FatI	CATG	6 cut(s)	69, 91, 162, 251, 312, 336
Fnu4HI	GCNGC	4 cut(s)	575, 629, 639, 652
FokI	GGATG	2 cut(s)	160, 593
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	575, 629, 639, 652
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	4 cut(s)	575, 629, 639, 652
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	6 cut(s)	15, 220, 235, 569, 587, 624
HgaI	GACGC	3 cut(s)	412, 574, 644
HhaI	GCGC	1 cut(s)	643
Hin1I	GRCGYC	2 cut(s)	404, 566
Hin1II	CATG	6 cut(s)	73, 95, 166, 255, 316, 340
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	6 cut(s)	15, 220, 235, 569, 587, 624
HphI	GGTGA	2 cut(s)	29, 298
Hpy166II	GTNNAC	4 cut(s)	260, 268, 481, 564
Hpy188I	TCNGA	2 cut(s)	508, 694
Hpy188III	TCNNGA	2 cut(s)	331, 391
Hpy8I	GTNNAC	4 cut(s)	260, 268, 481, 564
Hpy99I	CGWCG	2 cut(s)	10, 406
HpyAV	CCTTC	2 cut(s)	423, 494
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	46, 524, 606, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
Hsp92I	GRCGYC	2 cut(s)	404, 566
Hsp92II	CATG	6 cut(s)	73, 95, 166, 255, 316, 340
HspAI	GCGC	1 cut(s)	641
Kzo9I	GATC	3 cut(s)	179, 187, 213
LmnI	GCTCC	3 cut(s)	17, 194, 571
Lsp1109I	GCAGC	4 cut(s)	586, 615, 625, 638
LweI	GCATC	3 cut(s)	33, 511, 615
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	181, 189, 215
MboI	GATC	3 cut(s)	179, 187, 213
MboII	GAAGA	3 cut(s)	292, 295, 314
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	100, 592, 656
MnlI	CCTC	5 cut(s)	131, 170, 330, 406, 629
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	139, 311
MspI	CCGG	6 cut(s)	15, 220, 235, 569, 587, 624
MspR9I	CCNGG	3 cut(s)	587, 624, 625
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	574
NciI	CCSGG	3 cut(s)	587, 624, 625
NdeII	GATC	3 cut(s)	179, 187, 213
NlaIII	CATG	6 cut(s)	73, 95, 166, 255, 316, 340
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	576, 630, 640, 653
Psp124BI	GAGCTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	2 cut(s)	139, 311
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	575, 629, 639, 652
Sau3AI	GATC	3 cut(s)	179, 187, 213
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	3 cut(s)	587, 624, 625
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	9 cut(s)	14, 112, 123, 417, 486, 533, 583, 668, 692
SfaNI	GCATC	3 cut(s)	33, 511, 615
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	1 cut(s)	535
SmaI	CCCGGG	1 cut(s)	625
SmiMI	CAYNNNNRTG	2 cut(s)	139, 311
Sse9I	AATT	3 cut(s)	100, 592, 656
SspI	AATATT	1 cut(s)	277
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	585, 622, 623
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	80, 186, 216, 446
TasI	AATT	3 cut(s)	100, 592, 656
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	617
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	574, 628, 638, 651
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	5 cut(s)	27, 164, 179, 314, 482
TspGWI	ACGGA	1 cut(s)	36
TspMI	CCCGGG	1 cut(s)	623
TspRI	CASTG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.