Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

16777323 .. 16779408

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAAGCAAACTGACGGCAGAGAAAGGAAAGCTTACCTTTCTCTGCTATACTTTGCAGTCATTCTTCTTCCCGTATTCCTTCTCGGATGCTATCTGTACAACGAGAAGCAGCTGAGGGTTGGCCAGTTTCAGGAATTCAATACACATAACCTGCAAGAACACATCACTCCACTACAACAAAGCAAAGAAGATAAAGACAAGAAGACTGATCTTGTTCCATTAGAATTCTGTGATGTTTTCACAGGAAAATGGGTTCTTGATAACGTCACACATCCTTTATACAAAGAAGATGAATGTGAGTTTCTATCAGAGTGGGTGGCTTGTACAAGAAACGGGAGGCCAGACTCTAAGTACCAGAAATGGAGATGGCAACCTCAAGATTGCTCTTTGCCAAGGTTCGACAGTAAGCTGCTGCTAGAGAAACTCAGGGGAAAGAAACTAATGTTCATTGGTGATTCAATACATTACAATCAGTGGCAATCCATGGTTTGTATGGTTCAATCCGTGATTCCCTCAGGCAAAAAGACCTTAAAACACACAGCACAAATGTCCATCTTCAACATAGAGGAGTACAATGCAACCATATCATTTTACTGGGCACCTTTCCTAGTCGAATCAAATGCTGATCCTCCAGACAAGAGAGACGGGAAGACCGATCCAGTAATCATTCCTAATTCAATCTCGAAACACGGCGAGAACTGGAAAGACGCAGACTACCTCATATTCAACACCTACATATGGTGGACTAGACATTCCACGATCAAAGTTCTAAAACAAGAATCTTTCAACAAAGGAGACTCAAAAGAGTACAATGAAATCGGAATCTATATAGTATACAAACAAGTGTTATCAACATGGACAAAATGGCTAGAACAAAACATCAACCCAAGTCAAACATCTATCTTCTTCAGCAGCATGTCACCAACTCATATCAGAAGTTCAGATTGGGGATTCAATGAAGGAAGCAAATGTGAAAAAGAGACAGAACCAATACTAAACATGTCAAAACCAATAAATGTTGGAACAAATCGAAGACTTTACGAAATCGCACTGAATGCGACCAAATCTACAAAAGTGCCGATTCATTTCCTCAACATAACGACTATGTCAGAGTATAGAAAAGATGGGCATACCTCATTTTACGGTTCGATAAATGGGAAACTCATGACGCCGGAGCAGAAGTTAGATCCGAGAACTTTTGCTGATTGTTATCATTGGTGTCTTCCGGGATTGCCTGATTCATGGAACGAGTTGCTCTCTCTGTATATCATCTACAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

427

Amino Acids

50.01

Weight (kDa)

7.95

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	77 - 129	2.5e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	130 - 312	6.2e-55	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	834
AclWI	GGATC	3 cut(s)	620, 650, 1181
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	134, 224, 1278
AcuI	CTGAAG	1 cut(s)	892
AcyI	GRCGYC	1 cut(s)	1169
AfaI	GTAC	5 cut(s)	98, 325, 353, 572, 809
AfiI	CCNNNNNNNGG	2 cut(s)	130, 738
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	8 cut(s)	139, 459, 500, 559, 678, 727, 787, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	928, 960
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	32, 112, 409
AluI	AGCT	3 cut(s)	32, 112, 409
Alw26I	GTCTC	3 cut(s)	636, 789, 974
AlwI	GGATC	3 cut(s)	620, 650, 1181
AoxI	GGCC	2 cut(s)	121, 338
ApeKI	GCWGC	4 cut(s)	109, 409, 412, 912
ApoI	RAATTY	3 cut(s)	134, 224, 1278
AsuC2I	CCSGG	1 cut(s)	1227
AsuHPI	GGTGA	2 cut(s)	464, 912
AxyI	CCTNAGG	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	4 cut(s)	209, 656, 1039, 1214
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	121, 396, 399, 924
BccI	CCATC	3 cut(s)	360, 560, 1118
BceAI	ACGGC	2 cut(s)	31, 706
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BcnI	CCSGG	1 cut(s)	1227
BcoDI	GTCTC	3 cut(s)	636, 789, 974
BfaI	CTAG	4 cut(s)	416, 608, 747, 869
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	4 cut(s)	110, 410, 413, 913
BlsI	GCNGC	4 cut(s)	111, 411, 414, 914
Bme1390I	CCNGG	1 cut(s)	1227
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	1227
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	604
BpiI	GAAGAC	4 cut(s)	209, 656, 1039, 1214
BplI	GAGNNNNNCTC	2 cut(s)	1241, 1273
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	1227
BsaBI	GATNNNNATC	1 cut(s)	1209
BsaHI	GRCGYC	1 cut(s)	1169
BsaJI	CCNNGG	2 cut(s)	392, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 738
Bse1I	ACTGG	4 cut(s)	124, 599, 659, 704
Bse21I	CCTNAGG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	1209
BseDI	CCNNGG	2 cut(s)	392, 483
BseGI	GGATG	2 cut(s)	92, 271
BseJI	GATNNNNATC	1 cut(s)	1209
BseLI	CCNNNNNNNGG	2 cut(s)	130, 738
BseMII	CTCAG	3 cut(s)	104, 439, 528
BseNI	ACTGG	4 cut(s)	124, 599, 659, 704
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	4 cut(s)	121, 396, 399, 924
BshFI	GGCC	2 cut(s)	123, 340
BshNI	GGYRCC	1 cut(s)	598
BsiSI	CCGG	2 cut(s)	1172, 1226
BslI	CCNNNNNNNGG	2 cut(s)	130, 738
BsmAI	GTCTC	3 cut(s)	636, 789, 974
BsmBI	CGTCTC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	2 cut(s)	123, 340
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp1407I	TGTACA	2 cut(s)	96, 323
Bsp143I	GATC	5 cut(s)	208, 625, 655, 759, 1186
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	2 cut(s)	123, 340
BspCNI	CTCAG	3 cut(s)	105, 438, 527
BspHI	TCATGA	1 cut(s)	1164
BspLI	GGNNCC	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	620, 650, 1181
BspT107I	GGYRCC	1 cut(s)	598
BsrGI	TGTACA	2 cut(s)	96, 323
BsrI	ACTGG	4 cut(s)	124, 599, 659, 704
BssECI	CCNNGG	2 cut(s)	392, 483
BssMI	GATC	5 cut(s)	208, 625, 655, 759, 1186
BssNAI	GTATAC	1 cut(s)	835
BssNI	GRCGYC	1 cut(s)	1169
BssT1I	CCWWGG	2 cut(s)	392, 483
Bst1107I	GTATAC	1 cut(s)	835
Bst4CI	ACNGT	2 cut(s)	404, 1145
BstACI	GRCGYC	1 cut(s)	1169
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstAUI	TGTACA	2 cut(s)	96, 323
BstDEI	CTNAG	4 cut(s)	113, 348, 425, 514
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	92, 271
BstKTI	GATC	5 cut(s)	211, 628, 658, 762, 1189
BstMAI	GTCTC	3 cut(s)	636, 789, 974
BstMBI	GATC	5 cut(s)	208, 625, 655, 759, 1186
BstMWI	GCNNNNNNNGC	1 cut(s)	1055
BstNSI	RCATGY	2 cut(s)	919, 1003
BstSCI	CCNGG	1 cut(s)	1225
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	4 cut(s)	121, 396, 399, 924
BstV2I	GAAGAC	4 cut(s)	209, 656, 1039, 1214
BstX2I	RGATCY	1 cut(s)	1186
BstYI	RGATCY	1 cut(s)	1186
BstZ17I	GTATAC	1 cut(s)	835
Bsu36I	CCTNAGG	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	123, 340
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	92, 271
BtsIMutI	CAGTG	2 cut(s)	479, 1049
BveI	ACCTGC	1 cut(s)	159
CciI	TCATGA	1 cut(s)	1164
CseI	GACGC	2 cut(s)	716, 1177
Csp6I	GTAC	5 cut(s)	97, 324, 352, 571, 808
CviAII	CATG	6 cut(s)	484, 855, 916, 1000, 1165, 1242
CviJI	RGCY	7 cut(s)	32, 112, 123, 320, 340, 409, 868
CviKI_1	RGCY	7 cut(s)	32, 112, 123, 320, 340, 409, 868
CviQI	GTAC	5 cut(s)	97, 324, 352, 571, 808
DdeI	CTNAG	4 cut(s)	113, 348, 425, 514
DpnI	GATC	5 cut(s)	210, 627, 657, 761, 1188
DpnII	GATC	5 cut(s)	208, 625, 655, 759, 1186
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	392, 483
Eco57I	CTGAAG	1 cut(s)	892
Eco81I	CCTNAGG	1 cut(s)	514
EcoRI	GAATTC	2 cut(s)	134, 224
EcoT14I	CCWWGG	2 cut(s)	392, 483
ErhI	CCWWGG	2 cut(s)	392, 483
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	6 cut(s)	487, 858, 919, 1003, 1168, 1245
FalI	AAGNNNNNCTT	4 cut(s)	16, 48, 21, 53
FatI	CATG	6 cut(s)	483, 854, 915, 999, 1164, 1241
FauNDI	CATATG	1 cut(s)	737
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	4 cut(s)	110, 410, 413, 913
FokI	GGATG	2 cut(s)	99, 258
Fsp4HI	GCNGC	4 cut(s)	110, 410, 413, 913
FspBI	CTAG	4 cut(s)	416, 608, 747, 869
GluI	GCNGC	4 cut(s)	110, 410, 413, 913
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	123, 340
HapII	CCGG	2 cut(s)	1172, 1226
HgaI	GACGC	2 cut(s)	716, 1177
Hin1I	GRCGYC	1 cut(s)	1169
Hin1II	CATG	6 cut(s)	487, 858, 919, 1003, 1168, 1245
HindIII	AAGCTT	1 cut(s)	30
HpaII	CCGG	2 cut(s)	1172, 1226
HphI	GGTGA	2 cut(s)	464, 912
Hpy166II	GTNNAC	2 cut(s)	744, 835
Hpy188I	TCNGA	7 cut(s)	86, 310, 821, 935, 943, 1111, 1191
Hpy188III	TCNNGA	6 cut(s)	131, 257, 377, 632, 682, 1165
Hpy8I	GTNNAC	2 cut(s)	744, 835
HpyAV	CCTTC	2 cut(s)	89, 953
HpyCH4III	ACNGT	2 cut(s)	404, 1145
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	56, 154, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1055
HpyF3I	CTNAG	4 cut(s)	113, 348, 425, 514
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	1169
Hsp92II	CATG	6 cut(s)	487, 858, 919, 1003, 1168, 1245
Kzo9I	GATC	5 cut(s)	208, 625, 655, 759, 1186
LmnI	GCTCC	1 cut(s)	1174
Lsp1109I	GCAGC	4 cut(s)	121, 396, 399, 924
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	4 cut(s)	416, 608, 747, 869
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	265, 918
MalI	GATC	5 cut(s)	210, 627, 657, 761, 1188
MboI	GATC	5 cut(s)	208, 625, 655, 759, 1186
MflI	RGATCY	1 cut(s)	1186
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	4 cut(s)	134, 224, 673, 1278
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	338, 791
MmeI	TCCRAC	1 cut(s)	1000
MnlI	CCTC	9 cut(s)	108, 330, 384, 523, 559, 639, 728, 1100, 1144
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	2 cut(s)	530, 1282
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	2 cut(s)	1172, 1226
MspR9I	CCNGG	1 cut(s)	1227
Mva1269I	GAATGC	1 cut(s)	1060
MwoI	GCNNNNNNNGC	1 cut(s)	1055
NciI	CCSGG	1 cut(s)	1227
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	5 cut(s)	208, 625, 655, 759, 1186
NlaIII	CATG	6 cut(s)	487, 858, 919, 1003, 1168, 1245
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	265, 918
NspI	RCATGY	2 cut(s)	919, 1003
PagI	TCATGA	1 cut(s)	1164
PciI	ACATGT	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	8 cut(s)	455, 508, 614, 779, 822, 951, 1081, 1238
PflFI	GACNNNGTC	1 cut(s)	1105
PfoI	TCCNGGA	1 cut(s)	1225
PkrI	GCNGC	4 cut(s)	111, 411, 414, 914
PleI	GAGTC	2 cut(s)	338, 791
PpsI	GAGTC	2 cut(s)	338, 791
PscI	ACATGT	1 cut(s)	999
PspN4I	GGNNCC	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	1186
PsyI	GACNNNGTC	1 cut(s)	1105
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	5 cut(s)	98, 325, 353, 572, 809
RsaNI	GTAC	5 cut(s)	97, 324, 352, 571, 808
SaqAI	TTAA	2 cut(s)	530, 1282
SatI	GCNGC	4 cut(s)	110, 410, 413, 913
Sau3AI	GATC	5 cut(s)	208, 625, 655, 759, 1186
SchI	GAGTC	2 cut(s)	338, 791
ScrFI	CCNGG	1 cut(s)	1227
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	134, 224, 673, 1278
SspMI	CTAG	4 cut(s)	416, 608, 747, 869
StyD4I	CCNGG	1 cut(s)	1225
StyI	CCWWGG	2 cut(s)	392, 483
TaaI	ACNGT	2 cut(s)	404, 1145
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	5 cut(s)	399, 612, 683, 1030, 1148
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	4 cut(s)	134, 224, 673, 1278
TatI	WGTACW	4 cut(s)	96, 323, 570, 807
TfiI	GAWTC	8 cut(s)	455, 508, 614, 779, 822, 951, 1081, 1238
Tru1I	TTAA	2 cut(s)	530, 1282
Tru9I	TTAA	2 cut(s)	530, 1282
TscAI	CASTG	2 cut(s)	479, 1056
TseFI	GTSAC	2 cut(s)	265, 918
TseI	GCWGC	4 cut(s)	109, 409, 412, 912
Tsp45I	GTSAC	2 cut(s)	265, 918
TspDTI	ATGAA	7 cut(s)	17, 306, 436, 828, 972, 1073, 1230
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	2 cut(s)	479, 1056
Tth111I	GACNNNGTC	1 cut(s)	1105
XapI	RAATTY	3 cut(s)	134, 224, 1278
XceI	RCATGY	2 cut(s)	919, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	4 cut(s)	416, 608, 747, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.