Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Forward (+)

22364080 .. 22367080

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGGAATGGAAGGAAGGACTCTCTGTACCAGCATTGGAGATGGCAGCCCAGAGACTGTAATCTCCCAAAGTTTAATGCGAGATTGTTGCTGGAGAAATTGAGGAACAAGAGGCTGATGTTTGTTGGAGATTCACTGAACAGAAACCAGTGGGAATCCATGATTTGTTTTGCTCAGTCTGTCGTTCCTCCTGGCAGGAAGAGCTTGGTGAAGAATGGCTCCCTCTCTGTTTTCAGAGTTGAGGACTATAATGCCACGGTGGAATTTTATTGGGCTCCATTTCTGGTGGAGTCAAATTCAGATGATCGATCAAAAATGCACAGCATATTAAATCGAATAATAATGCCCAAATCAATTAAAAAGCATGGTGAAAATTGGAAGGGCGTCGACTATCTAATTTTCAACACATACATTTGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGTTCGTTCGATCAAGGGGCGACGGAATACGAAGAGATCGACCGGCCGTGGGCGTACCGGAGAGTCATGAAGACTTGGGCTAAGTGGGTGGACAAGAACATTGATCCTAATCGGACTACCGTTTTCTTCAGCAGCATGTCTCCTCTTCACATCAAGAGCTTGGATTGGGACAACCCAGATGGCATAAAATGTGCAAAAGAAACCACACCGGTTCTGAACATGACAACCCCGTTGGAAGTGGGCACGGACCGCAGGCTATTTGTGATTTCAAGCAACATAATAAAATCAATGAAAGTGCCCGTCTACTTTCTCAACATCACAACCCTCTCCGAGTTCCGCAAAGATGCACATACCTCAGTCCACACCATCAGGCAAGGCAAGCTGTTGACGCCGGAGCAGCAGGCCGACCCGGCCACTTACGCAGACTGCATCCATTGGTGCCTCCCCGGGTTGCCCGACACGTGGAACGAGTTTCTTTACTCACGTATCATCTCCCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

318

Amino Acids

37.29

Weight (kDa)

9.46

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	1 - 21	8.3e-06	PMR5 N terminal Domain
PC-Esterase	PF13839	22 - 311	6.7e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	948
AccI	GTMKAC	2 cut(s)	387, 753
AciI	CCGC	3 cut(s)	700, 787, 946
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	2 cut(s)	494, 861
AcsI	RAATTY	2 cut(s)	263, 295
AcuI	CTGAAG	1 cut(s)	562
AcvI	CACGTG	1 cut(s)	912
AcyI	GRCGYC	2 cut(s)	384, 839
AfaI	GTAC	2 cut(s)	29, 506
AfiI	CCNNNNNNNGG	2 cut(s)	499, 912
AflIII	ACRYGT	1 cut(s)	909
AgeI	ACCGGT	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	403, 433, 720
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	204, 609, 832
AluI	AGCT	3 cut(s)	204, 609, 832
Alw26I	GTCTC	2 cut(s)	48, 594
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	3 cut(s)	494, 852, 861
ApeKI	GCWGC	3 cut(s)	46, 582, 847
ApoI	RAATTY	2 cut(s)	263, 295
AsiGI	ACCGGT	1 cut(s)	658
Asp700I	GAANNNNTTC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	697
AsuC2I	CCSGG	3 cut(s)	860, 897, 898
AsuHPI	GGTGA	2 cut(s)	220, 380
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	2 cut(s)	695, 750
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	912
BbsI	GAAGAC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	58, 594, 859
BccI	CCATC	3 cut(s)	36, 623, 824
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	3 cut(s)	860, 897, 898
BcoDI	GTCTC	2 cut(s)	48, 594
BglI	GCCNNNNNGGC	1 cut(s)	860
BisI	GCNGC	3 cut(s)	47, 583, 848
BlsI	GCNGC	3 cut(s)	48, 584, 849
Bme1390I	CCNGG	4 cut(s)	192, 860, 897, 898
Bme18I	GGWCC	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	3 cut(s)	220, 276, 890
BmrFI	CCNGG	4 cut(s)	192, 860, 897, 898
BmsI	GCATC	2 cut(s)	784, 888
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	3 cut(s)	860, 897, 898
Bsa29I	ATCGAT	1 cut(s)	307
BsaAI	YACGTR	2 cut(s)	912, 935
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	2 cut(s)	384, 839
BsaJI	CCNNGG	4 cut(s)	255, 497, 895, 896
BsaWI	WCCGGW	2 cut(s)	507, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 912
Bse118I	RCCGGY	2 cut(s)	492, 658
Bse1I	ACTGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	4 cut(s)	255, 497, 895, 896
BseGI	GGATG	2 cut(s)	426, 879
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	499, 912
BseMII	CTCAG	2 cut(s)	188, 819
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	582
BseSI	GKGCMC	2 cut(s)	695, 750
BseX3I	CGGCCG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	58, 594, 859
Bsh1285I	CGRYCG	2 cut(s)	493, 497
BshFI	GGCC	3 cut(s)	496, 854, 863
BshNI	GGYRCC	1 cut(s)	888
BshTI	ACCGGT	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	307
BsiEI	CGRYCG	2 cut(s)	493, 497
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	6 cut(s)	493, 508, 659, 842, 860, 897
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	499, 912
BsmAI	GTCTC	2 cut(s)	48, 594
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	496, 854, 863
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	3 cut(s)	277, 695, 750
Bsp143I	GATC	5 cut(s)	304, 308, 460, 486, 553
BspACI	CCGC	3 cut(s)	700, 787, 946
BspANI	GGCC	3 cut(s)	496, 854, 863
BspCNI	CTCAG	2 cut(s)	187, 818
BspDI	ATCGAT	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	220, 276, 890
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	888
BsrBI	CCGCTC	1 cut(s)	948
BsrFI	RCCGGY	2 cut(s)	492, 658
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	2 cut(s)	492, 658
BssECI	CCNNGG	4 cut(s)	255, 497, 895, 896
BssMI	GATC	5 cut(s)	304, 308, 460, 486, 553
BssNI	GRCGYC	2 cut(s)	384, 839
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	59, 259, 571
Bst6I	CTCTTC	3 cut(s)	194, 477, 600
BstACI	GRCGYC	2 cut(s)	384, 839
BstBAI	YACGTR	2 cut(s)	912, 935
BstC8I	GCNNGC	3 cut(s)	704, 830, 852
BstDEI	CTNAG	3 cut(s)	174, 531, 805
BstDSI	CCRYGG	2 cut(s)	255, 497
BstF5I	GGATG	2 cut(s)	426, 879
BstKTI	GATC	5 cut(s)	307, 311, 463, 489, 556
BstMAI	GTCTC	2 cut(s)	48, 594
BstMBI	GATC	5 cut(s)	304, 308, 460, 486, 553
BstMCI	CGRYCG	2 cut(s)	493, 497
BstMWI	GCNNNNNNNGC	7 cut(s)	201, 699, 829, 838, 847, 860, 869
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	4 cut(s)	190, 858, 895, 896
BstSLI	GKGCMC	2 cut(s)	695, 750
BstV1I	GCAGC	3 cut(s)	58, 594, 859
BstV2I	GAAGAC	1 cut(s)	527
BstZI	CGGCCG	1 cut(s)	494
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	496, 854, 863
BsuTUI	ATCGAT	1 cut(s)	307
BtgI	CCRYGG	2 cut(s)	255, 497
BtsCI	GGATG	2 cut(s)	426, 879
BtsIMutI	CAGTG	2 cut(s)	134, 155
Cac8I	GCNNGC	3 cut(s)	704, 830, 852
CaiI	CAGNNNCTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	516
Cfr10I	RCCGGY	2 cut(s)	492, 658
Cfr13I	GGNCC	1 cut(s)	697
Cfr9I	CCCGGG	1 cut(s)	896
ClaI	ATCGAT	1 cut(s)	307
CpoI	CGGWCCG	1 cut(s)	697
CseI	GACGC	2 cut(s)	373, 847
Csp6I	GTAC	2 cut(s)	28, 505
CspAI	ACCGGT	1 cut(s)	658
CspI	CGGWCCG	1 cut(s)	697
CviAII	CATG	6 cut(s)	160, 365, 436, 517, 586, 670
CviQI	GTAC	2 cut(s)	28, 505
DdeI	CTNAG	3 cut(s)	174, 531, 805
DpnI	GATC	5 cut(s)	306, 310, 462, 488, 555
DpnII	GATC	5 cut(s)	304, 308, 460, 486, 553
EaeI	YGGCCR	2 cut(s)	494, 861
EagI	CGGCCG	1 cut(s)	494
Eam1104I	CTCTTC	3 cut(s)	194, 477, 600
EarI	CTCTTC	3 cut(s)	194, 477, 600
EclXI	CGGCCG	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	697
Eco52I	CGGCCG	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	562
Eco72I	CACGTG	1 cut(s)	912
Eco88I	CYCGRG	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	6 cut(s)	163, 368, 439, 520, 589, 673
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	6 cut(s)	159, 364, 435, 516, 585, 669
FblI	GTMKAC	2 cut(s)	387, 753
Fnu4HI	GCNGC	3 cut(s)	47, 583, 848
FokI	GGATG	2 cut(s)	433, 866
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	47, 583, 848
GluI	GCNGC	3 cut(s)	47, 583, 848
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	496, 854, 863
HapII	CCGG	6 cut(s)	493, 508, 659, 842, 860, 897
HgaI	GACGC	2 cut(s)	373, 847
Hin1I	GRCGYC	2 cut(s)	384, 839
Hin1II	CATG	6 cut(s)	163, 368, 439, 520, 589, 673
HincII	GTYRAC	2 cut(s)	388, 837
HindII	GTYRAC	2 cut(s)	388, 837
HinfI	GANTC	5 cut(s)	20, 131, 155, 290, 513
HpaII	CCGG	6 cut(s)	493, 508, 659, 842, 860, 897
HphI	GGTGA	2 cut(s)	220, 380
Hpy166II	GTNNAC	5 cut(s)	388, 541, 754, 811, 837
Hpy188I	TCNGA	5 cut(s)	236, 301, 564, 666, 781
Hpy188III	TCNNGA	3 cut(s)	517, 604, 951
Hpy8I	GTNNAC	5 cut(s)	388, 541, 754, 811, 837
Hpy99I	CGWCG	2 cut(s)	389, 475
HpyAV	CCTTC	3 cut(s)	6, 10, 373
HpyCH4III	ACNGT	3 cut(s)	59, 259, 571
HpyCH4IV	ACGT	2 cut(s)	911, 934
HpyCH4V	TGCA	4 cut(s)	319, 644, 797, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	201, 699, 829, 838, 847, 860, 869
HpyF3I	CTNAG	3 cut(s)	174, 531, 805
HpySE526I	ACGT	2 cut(s)	911, 934
Hsp92I	GRCGYC	2 cut(s)	384, 839
Hsp92II	CATG	6 cut(s)	163, 368, 439, 520, 589, 673
Kzo9I	GATC	5 cut(s)	304, 308, 460, 486, 553
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	3 cut(s)	224, 280, 844
Lsp1109I	GCAGC	3 cut(s)	58, 594, 859
LweI	GCATC	2 cut(s)	784, 888
MaeII	ACGT	2 cut(s)	911, 934
MalI	GATC	5 cut(s)	306, 310, 462, 488, 555
MbiI	CCGCTC	1 cut(s)	948
MboI	GATC	5 cut(s)	304, 308, 460, 486, 553
MboII	GAAGA	6 cut(s)	211, 223, 494, 532, 568, 587
MhlI	GDGCHC	3 cut(s)	277, 695, 750
MluCI	AATT	6 cut(s)	98, 263, 295, 354, 373, 396
MlyI	GAGTC	3 cut(s)	14, 299, 522
MmeI	TCCRAC	2 cut(s)	106, 663
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	3 cut(s)	75, 329, 357
MspI	CCGG	6 cut(s)	493, 508, 659, 842, 860, 897
MspR9I	CCNGG	4 cut(s)	192, 860, 897, 898
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	7 cut(s)	201, 699, 829, 838, 847, 860, 869
NciI	CCSGG	3 cut(s)	860, 897, 898
NdeII	GATC	5 cut(s)	304, 308, 460, 486, 553
NlaIII	CATG	6 cut(s)	163, 368, 439, 520, 589, 673
NlaIV	GGNNCC	3 cut(s)	220, 276, 890
NspI	RCATGY	1 cut(s)	589
PagI	TCATGA	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	131, 155
PinAI	ACCGGT	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	48, 584, 849
PleI	GAGTC	3 cut(s)	14, 298, 521
PmaCI	CACGTG	1 cut(s)	912
PmlI	CACGTG	1 cut(s)	912
PpsI	GAGTC	3 cut(s)	14, 298, 521
Ppu21I	YACGTR	2 cut(s)	912, 935
Psp6I	CCWGG	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	912
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	220, 276, 890
PspPI	GGNCC	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	57
RsaI	GTAC	2 cut(s)	29, 506
RsaNI	GTAC	2 cut(s)	28, 505
Rsr2I	CGGWCCG	1 cut(s)	697
RsrII	CGGWCCG	1 cut(s)	697
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	75, 329, 357
SatI	GCNGC	3 cut(s)	47, 583, 848
Sau3AI	GATC	5 cut(s)	304, 308, 460, 486, 553
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	3 cut(s)	14, 299, 522
ScrFI	CCNGG	4 cut(s)	192, 860, 897, 898
SduI	GDGCHC	3 cut(s)	277, 695, 750
SetI	ASST	7 cut(s)	206, 454, 611, 806, 834, 914, 937
SfaNI	GCATC	2 cut(s)	784, 888
SfiI	GGCCNNNNNGGCC	1 cut(s)	860
SinI	GGWCC	1 cut(s)	697
SmaI	CCCGGG	1 cut(s)	898
Sse9I	AATT	6 cut(s)	98, 263, 295, 354, 373, 396
SsiI	CCGC	3 cut(s)	700, 787, 946
StyD4I	CCNGG	4 cut(s)	190, 858, 895, 896
TaaI	ACNGT	3 cut(s)	59, 259, 571
TaiI	ACGT	2 cut(s)	914, 937
TaqI	TCGA	5 cut(s)	307, 334, 387, 459, 489
TasI	AATT	6 cut(s)	98, 263, 295, 354, 373, 396
TfiI	GAWTC	2 cut(s)	131, 155
Tru1I	TTAA	3 cut(s)	75, 329, 357
Tru9I	TTAA	3 cut(s)	75, 329, 357
TscAI	CASTG	2 cut(s)	141, 155
TseI	GCWGC	3 cut(s)	46, 582, 847
TspDTI	ATGAA	4 cut(s)	437, 452, 533, 755
TspGWI	ACGGA	2 cut(s)	488, 710
TspMI	CCCGGG	1 cut(s)	896
TspRI	CASTG	2 cut(s)	141, 155
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	2 cut(s)	263, 295
XceI	RCATGY	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	896
XmiI	GTMKAC	2 cut(s)	387, 753
XmnI	GAANNNNTTC	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.