Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

63210146 .. 63210691

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG445600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAAGTTCTACGAGGATCATTCAATCAAGGAGCAACAGAGTATTATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGATAAATGGGTGGACAAAAATATTGACCCCAATCGTACCATTGTCTTCTTCACCAGCATGTCTCGTCTCCATATCAAGAGCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAGCAGAACGACGCCGTTAGAAGTGGGCACAGACACAAGGCTCTTTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAACATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCGGCACGATTGGGCTGCAAGTTTGAGAGCTATAGTCAATCAAGTCATGCCAGCTCTGATATTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

6.51

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	7 - 159	8e-39	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccII	CGCG	1 cut(s)	476
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	242, 404
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	25, 539
AluBI	AGCT	3 cut(s)	419, 504, 528
AluI	AGCT	3 cut(s)	419, 504, 528
Alw26I	GTCTC	3 cut(s)	159, 164, 209
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	412, 466, 489
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	3 cut(s)	425, 462, 463
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	424, 453, 476
BccI	CCATC	2 cut(s)	188, 389
BceAI	ACGGC	2 cut(s)	46, 229
BcgI	CGANNNNNNTGC	4 cut(s)	351, 385, 471, 505
BcnI	CCSGG	3 cut(s)	425, 462, 463
BcoDI	GTCTC	3 cut(s)	159, 164, 209
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	4 cut(s)	413, 467, 477, 490
BlsI	GCNGC	4 cut(s)	414, 468, 478, 491
Bme1390I	CCNGG	3 cut(s)	425, 462, 463
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	3 cut(s)	425, 462, 463
BmsI	GCATC	2 cut(s)	349, 453
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	230
BpuMI	CCSGG	3 cut(s)	425, 462, 463
BsaHI	GRCGYC	2 cut(s)	242, 404
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	369, 460, 461
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	369, 460, 461
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	424, 453, 476
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	2 cut(s)	58, 62
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	58, 62
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	5 cut(s)	58, 73, 407, 425, 462
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	159, 164, 209
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	17, 51
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	369, 460, 461
BssMI	GATC	2 cut(s)	17, 51
BssNI	GRCGYC	2 cut(s)	242, 404
BstACI	GRCGYC	2 cut(s)	242, 404
BstC8I	GCNNGC	2 cut(s)	417, 526
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	2 cut(s)	20, 54
BstMAI	GTCTC	3 cut(s)	159, 164, 209
BstMBI	GATC	2 cut(s)	17, 51
BstMCI	CGRYCG	2 cut(s)	58, 62
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	423, 460, 461
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	424, 453, 476
BstV2I	GAAGAC	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	417, 526
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	373
Cfr9I	CCCGGG	1 cut(s)	461
CseI	GACGC	3 cut(s)	250, 412, 482
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	90, 151, 521
CviJI	RGCY	8 cut(s)	61, 68, 271, 419, 466, 489, 504, 528
CviKI_1	RGCY	8 cut(s)	61, 68, 271, 419, 466, 489, 504, 528
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	19, 53
DpnII	GATC	2 cut(s)	17, 51
EaeI	YGGCCR	1 cut(s)	59
EagI	CGGCCG	1 cut(s)	59
EclXI	CGGCCG	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	373
Eco52I	CGGCCG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	93, 154, 524
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	89, 150, 520
Fnu4HI	GCNGC	4 cut(s)	413, 467, 477, 490
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	4 cut(s)	413, 467, 477, 490
GluI	GCNGC	4 cut(s)	413, 467, 477, 490
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	5 cut(s)	58, 73, 407, 425, 462
HgaI	GACGC	3 cut(s)	250, 412, 482
Hin1I	GRCGYC	2 cut(s)	242, 404
Hin1II	CATG	3 cut(s)	93, 154, 524
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HpaII	CCGG	5 cut(s)	58, 73, 407, 425, 462
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	106, 319, 402
Hpy188I	TCNGA	2 cut(s)	346, 532
Hpy188III	TCNNGA	2 cut(s)	169, 229
Hpy8I	GTNNAC	3 cut(s)	106, 319, 402
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	362, 444, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	2 cut(s)	242, 404
Hsp92II	CATG	3 cut(s)	93, 154, 524
Kzo9I	GATC	2 cut(s)	17, 51
LmnI	GCTCC	2 cut(s)	32, 409
Lsp1109I	GCAGC	3 cut(s)	424, 453, 476
LweI	GCATC	2 cut(s)	349, 453
MalI	GATC	2 cut(s)	19, 53
MboI	GATC	2 cut(s)	17, 51
MboII	GAAGA	2 cut(s)	130, 133
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	430
MnlI	CCTC	3 cut(s)	8, 379, 467
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	5 cut(s)	58, 73, 407, 425, 462
MspR9I	CCNGG	3 cut(s)	425, 462, 463
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	412
NciI	CCSGG	3 cut(s)	425, 462, 463
NdeII	GATC	2 cut(s)	17, 51
NlaIII	CATG	3 cut(s)	93, 154, 524
NlaIV	GGNNCC	1 cut(s)	455
NspI	RCATGY	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	414, 468, 478, 491
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	4 cut(s)	413, 467, 477, 490
Sau3AI	GATC	2 cut(s)	17, 51
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	425, 462, 463
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	5 cut(s)	324, 371, 421, 506, 530
SfaNI	GCATC	2 cut(s)	349, 453
SfcI	CTRYAG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	373
SmaI	CCCGGG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	476
SspI	AATATT	1 cut(s)	115
StyD4I	CCNGG	3 cut(s)	423, 460, 461
TaqI	TCGA	2 cut(s)	54, 284
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	430
TauI	GCSGC	1 cut(s)	479
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	3 cut(s)	412, 466, 489
TspDTI	ATGAA	2 cut(s)	17, 320
TspMI	CCCGGG	1 cut(s)	461
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	373
XceI	RCATGY	1 cut(s)	154
XmaI	CCCGGG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.