Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004037

Physical Location & Seq

Genomic Coordinates Reverse (-)

23900149 .. 23900993

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAATTCGGCTTCTGTAGAGACTCAAGAACCTACCTTGGTGAAGAATGGATCCCTCTCTGTTTTCAGAATTGAGGATTATAATGCTACGGTGGAGTTCTACTGGGCACCATTTTTGGTGGAATTAGATTCAGATGATTCATTGATGCACAGCATACAAAACCGTATAATCATGCCTAAATCGATTAAGAAGAATGGTAAAAATTGGAAAGGTGTGGATTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCATTCGATCAAGGAGCAACAAAGTATGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACGACATGGGATAAATGGGTGGACAAAAATATTGACCCCCAATCCGTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACGCCGTTAGAAGTGGGCACAGGCAGAAGGCTCTCTGTGATTTCGAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACCTTCTCAATATTACTACTCTATCCGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATAATGATGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCAGACGCGGCACGATGGGGCTGCAAATTTGAGAGCTATAGTCAATCAAGTCGTGCCAGCTCTGATATTGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

255

Amino Acids

29.29

Weight (kDa)

5.65

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	13 - 233	9e-51	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40150 AT2G40160 AT2G40160 AT2G40160 AT3G55990
fragaria_vesca	FvH4_7g24620
malus_domestica	MD01G1154500.v1.1 MD07G1223300.v1.1
prunus_persica	Prupe.2G251900_v2.0.a1
pyrus_communis	pycom01g17170 pycom07g20190 pycom07g20200
rosa_chinensis	RchiOBHm_Chr1g0367551 RchiOBHm_Chr1g0370451
rosa_laevigata	RLG00000004529 RLG00000004557 RLG00000008944 RLG00000027040 RLG00000036183
rosa_multiflora	Rmu_sc0005656.1_g000014
rosa_roxburghii	Rroxscaffold_4G00286550
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1BG328300 Rh1CG341400 Rh2CG472100 Rh2CG472200 Rh2DG621700 Rh7DG249300 Rh7DG249400 Rh7DG445600
rosa_wichuraiana	Rw1G010640 Rw1G032200 Rw6G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	109, 675
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccII	CGCG	1 cut(s)	698
AciI	CCGC	1 cut(s)	698
AclWI	GGATC	3 cut(s)	48, 61, 292
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	7, 716
AcyI	GRCGYC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	331, 397, 402
AgsI	TTSAA	3 cut(s)	235, 265, 761
AluBI	AGCT	3 cut(s)	641, 726, 750
AluI	AGCT	3 cut(s)	641, 726, 750
Alw26I	GTCTC	2 cut(s)	17, 431
AlwI	GGATC	3 cut(s)	48, 61, 292
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	634, 688, 711
ApoI	RAATTY	2 cut(s)	7, 716
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	3 cut(s)	647, 684, 685
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	595
BaeGI	GKGCMC	2 cut(s)	112, 482
BamHI	GGATCC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	109, 675
BbvI	GCAGC	3 cut(s)	646, 675, 698
BccI	CCATC	3 cut(s)	410, 611, 699
BceAI	ACGGC	2 cut(s)	313, 451
BcgI	CGANNNNNNTGC	4 cut(s)	573, 607, 693, 727
BcnI	CCSGG	3 cut(s)	647, 684, 685
BcoDI	GTCTC	2 cut(s)	17, 431
BfmI	CTRYAG	2 cut(s)	18, 727
BisI	GCNGC	4 cut(s)	635, 689, 699, 712
BlsI	GCNGC	4 cut(s)	636, 690, 700, 713
Bme1390I	CCNGG	3 cut(s)	647, 684, 685
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	3 cut(s)	55, 111, 677
BmrFI	CCNGG	3 cut(s)	647, 684, 685
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	4 cut(s)	138, 571, 615, 675
BmuI	ACTGGG	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	12
BpuMI	CCSGG	3 cut(s)	647, 684, 685
Bsa29I	ATCGAT	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	5 cut(s)	39, 396, 591, 682, 683
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 397, 402
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	110, 677
Bse3DI	GCAATG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	5 cut(s)	39, 396, 591, 682, 683
BseGI	GGATG	2 cut(s)	258, 666
BseLI	CCNNNNNNNGG	3 cut(s)	331, 397, 402
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	110, 677
BseSI	GKGCMC	2 cut(s)	112, 482
BseX3I	CGGCCG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	646, 675, 698
Bsh1236I	CGCG	1 cut(s)	698
Bsh1285I	CGRYCG	2 cut(s)	325, 329
BshFI	GGCC	1 cut(s)	328
BshNI	GGYRCC	2 cut(s)	109, 675
BshVI	ATCGAT	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	325, 329
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	5 cut(s)	325, 340, 629, 647, 684
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	331, 397, 402
BsmAI	GTCTC	2 cut(s)	17, 431
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	328
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	112, 482
Bsp143I	GATC	4 cut(s)	53, 284, 292, 318
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	3 cut(s)	55, 111, 677
BspPI	GGATC	3 cut(s)	48, 61, 292
BspT107I	GGYRCC	2 cut(s)	109, 675
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	110, 677
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	5 cut(s)	39, 396, 591, 682, 683
BssMI	GATC	4 cut(s)	53, 284, 292, 318
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	94, 167
BstACI	GRCGYC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	639, 748
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	258, 666
BstFNI	CGCG	1 cut(s)	698
BstKTI	GATC	4 cut(s)	56, 287, 295, 321
BstMAI	GTCTC	2 cut(s)	17, 431
BstMBI	GATC	4 cut(s)	53, 284, 292, 318
BstMCI	CGRYCG	2 cut(s)	325, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstSCI	CCNGG	3 cut(s)	645, 682, 683
BstSFI	CTRYAG	2 cut(s)	18, 727
BstSLI	GKGCMC	2 cut(s)	112, 482
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	3 cut(s)	646, 675, 698
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BstZI	CGGCCG	1 cut(s)	326
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	328
BsuTUI	ATCGAT	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	258, 666
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	2 cut(s)	639, 748
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	595
Cfr9I	CCCGGG	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	2 cut(s)	472, 704
CviAII	CATG	3 cut(s)	175, 268, 357
CviJI	RGCY	9 cut(s)	14, 328, 335, 493, 641, 688, 711, 726, 750
CviKI_1	RGCY	9 cut(s)	14, 328, 335, 493, 641, 688, 711, 726, 750
DpnI	GATC	4 cut(s)	55, 286, 294, 320
DpnII	GATC	4 cut(s)	53, 284, 292, 318
EaeI	YGGCCR	1 cut(s)	326
EagI	CGGCCG	1 cut(s)	326
EclXI	CGGCCG	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	595
Eco52I	CGGCCG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	178, 271, 360
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	174, 267, 356
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	635, 689, 699, 712
FokI	GGATG	2 cut(s)	265, 653
Fsp4HI	GCNGC	4 cut(s)	635, 689, 699, 712
GluI	GCNGC	4 cut(s)	635, 689, 699, 712
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	5 cut(s)	325, 340, 629, 647, 684
HgaI	GACGC	2 cut(s)	472, 704
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	178, 271, 360
HinfI	GANTC	3 cut(s)	25, 131, 140
HpaII	CCGG	5 cut(s)	325, 340, 629, 647, 684
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	373, 541
Hpy188I	TCNGA	4 cut(s)	71, 136, 568, 754
Hpy188III	TCNNGA	2 cut(s)	29, 451
Hpy8I	GTNNAC	2 cut(s)	373, 541
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	483, 554
HpyCH4III	ACNGT	2 cut(s)	94, 167
HpyCH4V	TGCA	4 cut(s)	151, 584, 666, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	178, 271, 360
Kzo9I	GATC	4 cut(s)	53, 284, 292, 318
LmnI	GCTCC	2 cut(s)	299, 631
Lsp1109I	GCAGC	3 cut(s)	646, 675, 698
LweI	GCATC	4 cut(s)	138, 571, 615, 675
MalI	GATC	4 cut(s)	55, 286, 294, 320
MboI	GATC	4 cut(s)	53, 284, 292, 318
MboII	GAAGA	2 cut(s)	58, 205
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	112, 482
MluCI	AATT	6 cut(s)	7, 72, 125, 205, 652, 716
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	68, 70, 236, 275, 601, 689
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	189, 766
MslI	CAYNNNNRTG	1 cut(s)	244
MspI	CCGG	5 cut(s)	325, 340, 629, 647, 684
MspR9I	CCNGG	3 cut(s)	647, 684, 685
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	634
NciI	CCSGG	3 cut(s)	647, 684, 685
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	4 cut(s)	53, 284, 292, 318
NlaIII	CATG	3 cut(s)	178, 271, 360
NlaIV	GGNNCC	3 cut(s)	55, 111, 677
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	131, 140
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	636, 690, 700, 713
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	55, 111, 677
PspPI	GGNCC	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	189, 766
SatI	GCNGC	4 cut(s)	635, 689, 699, 712
Sau3AI	GATC	4 cut(s)	53, 284, 292, 318
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	647, 684, 685
SduI	GDGCHC	2 cut(s)	112, 482
SetI	ASST	9 cut(s)	37, 41, 217, 228, 546, 593, 643, 728, 752
SfaNI	GCATC	4 cut(s)	138, 571, 615, 675
SfcI	CTRYAG	2 cut(s)	18, 727
SinI	GGWCC	1 cut(s)	595
SmaI	CCCGGG	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	6 cut(s)	7, 72, 125, 205, 652, 716
SsiI	CCGC	1 cut(s)	698
SspI	AATATT	2 cut(s)	382, 553
StyD4I	CCNGG	3 cut(s)	645, 682, 683
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	94, 167
TaqI	TCGA	4 cut(s)	185, 291, 321, 506
TaqII	GACCGA	1 cut(s)	583
TasI	AATT	6 cut(s)	7, 72, 125, 205, 652, 716
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	2 cut(s)	131, 140
Tru1I	TTAA	2 cut(s)	189, 766
Tru9I	TTAA	2 cut(s)	189, 766
TscAI	CASTG	1 cut(s)	677
TseI	GCWGC	3 cut(s)	634, 688, 711
TspDTI	ATGAA	4 cut(s)	132, 269, 284, 542
TspGWI	ACGGA	1 cut(s)	385
TspMI	CCCGGG	1 cut(s)	683
TspRI	CASTG	1 cut(s)	677
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	7, 716
XmaI	CCCGGG	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.