AT2G41060

Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001435
Physical Location & Seq
Forward (+)
17126989 .. 17130569
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41060.3

Sequence Viewer

Length: 1356 bp
ATGACAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAACGTCAGAGCCGACGGAGAAGCAGCAGCAGCAATGTGAAAAAGAGGATCCGGAAATCAGAAATGTTGATAATCAAAGAGACGACGACGAACAAGTAGTAGAGCAAGACACACTAAAGGAGATGCACGAAGAGGAAGCTAAAGGTGAAGATAACATAGAAGCGGAGACGTCGTCCGGATCTGGGAATCAAGGAAATGAGGATGATGACGAAGAAGAACCTATTGAGGATCTATTGGAACCGTTTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTAGCTAATCGAATCCGGATTGTGGCGGATGAAGATCTTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCTGATTCACTTATCGACGCTTTTAAACAGTACGGAGAGATTGAAGATTGCAAATGTGTGGTTGATAAGGTATCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCGTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGGAACCCTGTTGTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATTTATGTCAGTAACGTTAGTGCAGACATTGATCCGCAGAAGTTGCTGGAGTTTTTCTCAAGGTTTGGGGAGATAGAAGAAGGTCCTTTGGGGCTTGATAAAGCTACTGGGAGACCTAAAGGTTTCGCTTTGTTTGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCAAAACAGGTTAAGCAACATCAACATAACCATAACTCTCACAATCAAAATTCCCGTTACCAAAGGAACGACAACAATGGTTATGGTGCCCCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGTGCAGGCGTTTAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGGTTTAAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGCTGTAGGTGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCTCACCTGGGGTCTATCCTGGGTACGGTGCTCAAGCCGGGTACCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGGCGGTGCGGGAAGAGGGCAGCATGGTGCTGGGTATGGTGGTCCTTACATGGGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

451

Amino Acids

49.03

Weight (kDa)

5.63

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 130 - 191 5.7e-13 RNA recognition motif
RRM_1 PF00076 229 - 298 3.9e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 1260
AccB1I GGYRCC 2 cut(s) 1001, 1260
AccII CGCG 1 cut(s) 333
AccIII TCCGGA 3 cut(s) 88, 212, 351
AciI CCGC 6 cut(s) 200, 362, 719, 1269, 1299, 1304
AclI AACGTT 1 cut(s) 699
AclWI GGATC 7 cut(s) 80, 93, 223, 273, 297, 710, 822
AcoI YGGCCR 2 cut(s) 1065, 1072
AcsI RAATTY 1 cut(s) 964
AcyI GRCGYC 2 cut(s) 206, 608
AfaI GTAC 4 cut(s) 452, 1207, 1244, 1262
AfiI CCNNNNNNNGG 8 cut(s) 219, 358, 626, 640, 1070, 1244, 1295, 1346
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 4 cut(s) 285, 464, 661, 878
AjnI CCWGG 7 cut(s) 1006, 1074, 1171, 1225, 1237, 1263, 1288
Alw21I GWGCWC 2 cut(s) 547, 1252
Alw26I GTCTC 4 cut(s) 111, 197, 319, 790
AlwI GGATC 7 cut(s) 80, 93, 223, 273, 297, 710, 822
AlwNI CAGNNNCTG 1 cut(s) 1178
Aor13HI TCCGGA 3 cut(s) 88, 212, 351
AoxI GGCC 6 cut(s) 880, 914, 1012, 1065, 1072, 1077
ApeKI GCWGC 6 cut(s) 61, 64, 67, 317, 562, 1315
ApoI RAATTY 1 cut(s) 964
Asp718I GGTACC 1 cut(s) 1260
AspS9I GGNCC 5 cut(s) 617, 767, 914, 1078, 1337
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 2 cut(s) 194, 1215
AsuNHI GCTAGC 1 cut(s) 1166
AvaII GGWCC 3 cut(s) 617, 767, 1337
BaeGI GKGCMC 1 cut(s) 1006
BalI TGGCCA 1 cut(s) 1074
BamHI GGATCC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 1001, 1260
Bbv12I GWGCWC 2 cut(s) 547, 1252
BbvI GCAGC 6 cut(s) 73, 76, 79, 304, 574, 1327
BccI CCATC 2 cut(s) 402, 905
BciT130I CCWGG 7 cut(s) 1008, 1076, 1173, 1227, 1239, 1265, 1290
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 4 cut(s) 111, 197, 319, 790
BfaI CTAG 2 cut(s) 833, 1167
BfmI CTRYAG 4 cut(s) 318, 612, 823, 1179
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 848
BglII AGATCT 2 cut(s) 370, 387
BisI GCNGC 6 cut(s) 62, 65, 68, 318, 563, 1316
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 6 cut(s) 63, 66, 69, 319, 564, 1317
Bme1390I CCNGG 8 cut(s) 1008, 1076, 1173, 1227, 1239, 1258, 1265, 1290
Bme18I GGWCC 3 cut(s) 617, 767, 1337
BmgT120I GGNCC 5 cut(s) 617, 767, 914, 1078, 1337
BmiI GGNNCC 7 cut(s) 87, 276, 632, 645, 861, 1003, 1262
BmrFI CCNGG 8 cut(s) 1008, 1076, 1173, 1227, 1239, 1258, 1265, 1290
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 150, 1106
BmtI GCTAGC 1 cut(s) 1170
BmuI ACTGGG 1 cut(s) 801
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 2 cut(s) 752, 1029
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 4 cut(s) 293, 727, 1194, 1236
BpuMI CCSGG 1 cut(s) 1258
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 2 cut(s) 206, 608
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 6 cut(s) 1006, 1015, 1171, 1226, 1238, 1264
BsaWI WCCGGW 3 cut(s) 88, 212, 351
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 8 cut(s) 219, 358, 626, 640, 1070, 1244, 1295, 1346
Bse1I ACTGG 1 cut(s) 796
Bse3DI GCAATG 2 cut(s) 77, 892
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 3 cut(s) 88, 212, 351
BseBI CCWGG 7 cut(s) 1008, 1076, 1173, 1227, 1239, 1265, 1290
BseDI CCNNGG 6 cut(s) 1006, 1015, 1171, 1226, 1238, 1264
BseGI GGATG 3 cut(s) 244, 370, 413
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 8 cut(s) 219, 358, 626, 640, 1070, 1244, 1295, 1346
BseMI GCAATG 2 cut(s) 77, 892
BseMII CTCAG 5 cut(s) 581, 657, 665, 1115, 1295
BseNI ACTGG 1 cut(s) 796
BseRI GAGGAG 1 cut(s) 872
BseSI GKGCMC 1 cut(s) 1006
BseXI GCAGC 6 cut(s) 73, 76, 79, 304, 574, 1327
BseYI CCCAGC 2 cut(s) 1109, 1325
BsgI GTGCAG 2 cut(s) 726, 1070
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 6 cut(s) 882, 916, 1014, 1067, 1074, 1079
BshNI GGYRCC 2 cut(s) 1001, 1260
BsiHKAI GWGCWC 2 cut(s) 547, 1252
BsiSI CCGG 5 cut(s) 89, 213, 352, 1064, 1257
BslFI GGGAC 2 cut(s) 1165, 1174
BslI CCNNNNNNNGG 8 cut(s) 219, 358, 626, 640, 1070, 1244, 1295, 1346
BsmAI GTCTC 4 cut(s) 111, 197, 319, 790
BsmBI CGTCTC 2 cut(s) 111, 197
BsmFI GGGAC 2 cut(s) 1165, 1174
BsmI GAATGC 1 cut(s) 1194
BsnI GGCC 6 cut(s) 882, 916, 1014, 1067, 1074, 1079
Bso31I GGTCTC 1 cut(s) 790
Bsp1286I GDGCHC 3 cut(s) 547, 1006, 1252
Bsp13I TCCGGA 3 cut(s) 88, 212, 351
Bsp143I GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
Bsp1720I GCTNAGC 1 cut(s) 651
Bsp19I CCATGG 1 cut(s) 1015
Bsp68I TCGCGA 1 cut(s) 333
BspACI CCGC 6 cut(s) 200, 362, 719, 1269, 1299, 1304
BspANI GGCC 6 cut(s) 882, 916, 1014, 1067, 1074, 1079
BspCNI CTCAG 5 cut(s) 580, 658, 664, 1114, 1294
BspEI TCCGGA 3 cut(s) 88, 212, 351
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 7 cut(s) 87, 276, 632, 645, 861, 1003, 1262
BspMAI CTGCAG 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 1170
BspPI GGATC 7 cut(s) 80, 93, 223, 273, 297, 710, 822
BspT107I GGYRCC 2 cut(s) 1001, 1260
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 77, 892
BsrI ACTGG 1 cut(s) 796
BssECI CCNNGG 6 cut(s) 1006, 1015, 1171, 1226, 1238, 1264
BssMI GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
BssNI GRCGYC 2 cut(s) 206, 608
BssT1I CCWWGG 1 cut(s) 1015
Bst2UI CCWGG 7 cut(s) 1008, 1076, 1173, 1227, 1239, 1265, 1290
Bst4CI ACNGT 3 cut(s) 279, 450, 1247
Bst6I CTCTTC 3 cut(s) 5, 162, 1303
BstACI GRCGYC 2 cut(s) 206, 608
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 727
BstC8I GCNNGC 7 cut(s) 598, 602, 606, 1053, 1095, 1140, 1168
BstDEI CTNAG 5 cut(s) 567, 651, 666, 1101, 1281
BstDSI CCRYGG 1 cut(s) 1015
BstF5I GGATG 3 cut(s) 244, 370, 413
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 8 cut(s) 88, 218, 268, 292, 373, 390, 718, 830
BstMAI GTCTC 4 cut(s) 111, 197, 319, 790
BstMBI GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
BstMWI GCNNNNNNNGC 7 cut(s) 67, 551, 727, 848, 1052, 1085, 1094
BstNI CCWGG 7 cut(s) 1008, 1076, 1173, 1227, 1239, 1265, 1290
BstSCI CCNGG 8 cut(s) 1006, 1074, 1171, 1225, 1237, 1256, 1263, 1288
BstSFI CTRYAG 4 cut(s) 318, 612, 823, 1179
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 6 cut(s) 73, 76, 79, 304, 574, 1327
BstX2I RGATCY 6 cut(s) 85, 215, 265, 370, 387, 827
BstXI CCANNNNNNTGG 1 cut(s) 1133
BstYI RGATCY 6 cut(s) 85, 215, 265, 370, 387, 827
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 6 cut(s) 882, 916, 1014, 1067, 1074, 1079
BtgI CCRYGG 1 cut(s) 1015
BtgZI GCGATG 2 cut(s) 314, 348
BtsCI GGATG 3 cut(s) 244, 370, 413
BtuMI TCGCGA 1 cut(s) 333
Cac8I GCNNGC 7 cut(s) 598, 602, 606, 1053, 1095, 1140, 1168
CaiI CAGNNNCTG 1 cut(s) 1178
Cfr13I GGNCC 5 cut(s) 617, 767, 914, 1078, 1337
CseI GACGC 2 cut(s) 446, 597
CsiI ACCWGGT 1 cut(s) 1288
Csp6I GTAC 4 cut(s) 451, 1206, 1243, 1261
CviAII CATG 4 cut(s) 884, 1016, 1319, 1345
CviQI GTAC 4 cut(s) 451, 1206, 1243, 1261
DdeI CTNAG 5 cut(s) 567, 651, 666, 1101, 1281
DpnI GATC 8 cut(s) 87, 217, 267, 291, 372, 389, 717, 829
DpnII GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
DraI TTTAAA 2 cut(s) 445, 1122
EaeI YGGCCR 2 cut(s) 1065, 1072
Eam1104I CTCTTC 3 cut(s) 5, 162, 1303
EarI CTCTTC 3 cut(s) 5, 162, 1303
EciI GGCGGA 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 1015
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 3 cut(s) 617, 767, 1337
EcoO109I RGGNCCY 3 cut(s) 617, 767, 1078
EcoRII CCWGG 7 cut(s) 1006, 1074, 1171, 1225, 1237, 1263, 1288
EcoT14I CCWWGG 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1015
Esp3I CGTCTC 2 cut(s) 111, 197
FaeI CATG 4 cut(s) 887, 1019, 1322, 1348
FaqI GGGAC 2 cut(s) 1165, 1174
FatI CATG 4 cut(s) 883, 1015, 1318, 1344
FauI CCCGC 1 cut(s) 1297
Fnu4HI GCNGC 6 cut(s) 62, 65, 68, 318, 563, 1316
FokI GGATG 3 cut(s) 251, 377, 420
Fsp4HI GCNGC 6 cut(s) 62, 65, 68, 318, 563, 1316
FspBI CTAG 2 cut(s) 833, 1167
GluI GCNGC 6 cut(s) 62, 65, 68, 318, 563, 1316
GsaI CCCAGC 2 cut(s) 1113, 1329
GsuI CTGGAG 2 cut(s) 752, 1029
HaeIII GGCC 6 cut(s) 882, 916, 1014, 1067, 1074, 1079
HapII CCGG 5 cut(s) 89, 213, 352, 1064, 1257
HgaI GACGC 2 cut(s) 446, 597
Hin1I GRCGYC 2 cut(s) 206, 608
Hin1II CATG 4 cut(s) 887, 1019, 1322, 1348
HinfI GANTC 7 cut(s) 23, 29, 223, 301, 348, 425, 1279
HpaII CCGG 5 cut(s) 89, 213, 352, 1064, 1257
HphI GGTGA 2 cut(s) 194, 1215
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 6 cut(s) 28, 46, 98, 570, 678, 1278
Hpy188III TCNNGA 5 cut(s) 89, 213, 332, 352, 665
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 5 cut(s) 55, 125, 128, 211, 440
HpyAV CCTTC 3 cut(s) 758, 841, 872
HpyCH4III ACNGT 3 cut(s) 279, 450, 1247
HpyCH4IV ACGT 3 cut(s) 41, 206, 699
HpyCH4V TGCA 6 cut(s) 163, 320, 471, 707, 892, 1051
HpyF10VI GCNNNNNNNGC 7 cut(s) 67, 551, 727, 848, 1052, 1085, 1094
HpyF3I CTNAG 5 cut(s) 567, 651, 666, 1101, 1281
HpySE526I ACGT 3 cut(s) 41, 206, 699
Hsp92I GRCGYC 2 cut(s) 206, 608
Hsp92II CATG 4 cut(s) 887, 1019, 1322, 1348
Kpn2I TCCGGA 3 cut(s) 88, 212, 351
KpnI GGTACC 1 cut(s) 1264
Kzo9I GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
LmnI GCTCC 3 cut(s) 649, 859, 1175
Lsp1109I GCAGC 6 cut(s) 73, 76, 79, 304, 574, 1327
LweI GCATC 2 cut(s) 150, 1106
MabI ACCWGGT 1 cut(s) 1288
MaeI CTAG 2 cut(s) 833, 1167
MaeII ACGT 3 cut(s) 41, 206, 699
MaeIII GTNAC 3 cut(s) 548, 695, 971
MalI GATC 8 cut(s) 87, 217, 267, 291, 372, 389, 717, 829
MboI GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
MflI RGATCY 6 cut(s) 85, 215, 265, 370, 387, 827
MhlI GDGCHC 3 cut(s) 547, 1006, 1252
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 1 cut(s) 964
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 1 cut(s) 1273
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 1074
MroI TCCGGA 3 cut(s) 88, 212, 351
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 6 cut(s) 444, 528, 558, 927, 1059, 1121
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 604
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 5 cut(s) 89, 213, 352, 1064, 1257
MspR9I CCNGG 8 cut(s) 1008, 1076, 1173, 1227, 1239, 1258, 1265, 1290
MssI GTTTAAAC 1 cut(s) 1122
Mva1269I GAATGC 1 cut(s) 1194
MvaI CCWGG 7 cut(s) 1008, 1076, 1173, 1227, 1239, 1265, 1290
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 7 cut(s) 67, 551, 727, 848, 1052, 1085, 1094
NciI CCSGG 1 cut(s) 1258
NcoI CCATGG 1 cut(s) 1015
NdeII GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
NheI GCTAGC 1 cut(s) 1166
NlaIII CATG 4 cut(s) 887, 1019, 1322, 1348
NlaIV GGNNCC 7 cut(s) 87, 276, 632, 645, 861, 1003, 1262
NruI TCGCGA 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 23, 29, 223, 301, 348, 425
PflFI GACNNNGTC 1 cut(s) 208
PkrI GCNGC 6 cut(s) 63, 66, 69, 319, 564, 1317
PleI GAGTC 1 cut(s) 1273
PmeI GTTTAAAC 1 cut(s) 1122
PpsI GAGTC 1 cut(s) 1273
PpuMI RGGWCCY 2 cut(s) 617, 767
Psp1406I AACGTT 1 cut(s) 699
Psp5II RGGWCCY 2 cut(s) 617, 767
Psp6I CCWGG 7 cut(s) 1006, 1074, 1171, 1225, 1237, 1263, 1288
PspFI CCCAGC 2 cut(s) 1109, 1325
PspGI CCWGG 7 cut(s) 1006, 1074, 1171, 1225, 1237, 1263, 1288
PspN4I GGNNCC 7 cut(s) 87, 276, 632, 645, 861, 1003, 1262
PspPI GGNCC 5 cut(s) 617, 767, 914, 1078, 1337
PspPPI RGGWCCY 2 cut(s) 617, 767
PstI CTGCAG 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 1178
PsuI RGATCY 6 cut(s) 85, 215, 265, 370, 387, 827
PsyI GACNNNGTC 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 604
RruI TCGCGA 1 cut(s) 333
RsaI GTAC 4 cut(s) 452, 1207, 1244, 1262
RsaNI GTAC 4 cut(s) 451, 1206, 1243, 1261
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 6 cut(s) 444, 528, 558, 927, 1059, 1121
SatI GCNGC 6 cut(s) 62, 65, 68, 318, 563, 1316
Sau3AI GATC 8 cut(s) 85, 215, 265, 289, 370, 387, 715, 827
Sau96I GGNCC 5 cut(s) 617, 767, 914, 1078, 1337
SchI GAGTC 1 cut(s) 1273
ScrFI CCNGG 8 cut(s) 1008, 1076, 1173, 1227, 1239, 1258, 1265, 1290
SduI GDGCHC 3 cut(s) 547, 1006, 1252
SexAI ACCWGGT 1 cut(s) 1288
SfaNI GCATC 2 cut(s) 150, 1106
SfcI CTRYAG 4 cut(s) 318, 612, 823, 1179
SinI GGWCC 3 cut(s) 617, 767, 1337
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 5 cut(s) 308, 557, 742, 1209, 1251
SmoI CTYRAG 5 cut(s) 308, 557, 742, 1209, 1251
Sse9I AATT 1 cut(s) 964
SsiI CCGC 6 cut(s) 200, 362, 719, 1269, 1299, 1304
SspMI CTAG 2 cut(s) 833, 1167
StyD4I CCNGG 8 cut(s) 1006, 1074, 1171, 1225, 1237, 1256, 1263, 1288
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 3 cut(s) 279, 450, 1247
TaiI ACGT 3 cut(s) 44, 209, 702
TaqI TCGA 3 cut(s) 21, 346, 435
TasI AATT 1 cut(s) 964
TfiI GAWTC 6 cut(s) 23, 29, 223, 301, 348, 425
Tru1I TTAA 6 cut(s) 444, 528, 558, 927, 1059, 1121
Tru9I TTAA 6 cut(s) 444, 528, 558, 927, 1059, 1121
TseI GCWGC 6 cut(s) 61, 64, 67, 317, 562, 1315
TspDTI ATGAA 3 cut(s) 368, 381, 1015
TspGWI ACGGA 2 cut(s) 68, 468
Tth111I GACNNNGTC 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 617, 767, 1337
XapI RAATTY 1 cut(s) 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XspI CTAG 2 cut(s) 833, 1167
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.