Prupe.6G197500_v2.0.a1

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001435
Physical Location & Seq
Forward (+)
20464775 .. 20465989
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G197500.1

Sequence Viewer

Length: 1068 bp
ATGGCCCAAAGCGGCCCAAGAGGCGAAAGGGGGACAAAATATGAGGACCCGATCCACCGCAAGATCTTCGCCCACGGGCTCGGATGGGACACCAACGCCGAAACCCTAACCAGCGTGTTTAAGGAGTACGGTGAGATTGAGGATTGCAAGGCTGTGTGCGATAAGGTCTCTGGTAAGTCCAAGGGTTATGGCTTCATTCTTTTCAAGACTCGTTCTGGGGCTCGAAAAGCCCTAAAGCAGCCGCGGAAGGAGATCGGCAATCGGATGACTGCGTGCCAGCTGGCGGCTATTGGCCCAGGCCCGGCTCCGAGTGCCGCTGCCGCTGTGCCTGTGGCGGTCCAGGCGGCCCAGTCGCAGACAGTGTCGGAGTACACGCAGAGGAAGATCTATGTGAGCAATGTTGGGGCGGACTTGGAACCCCGGAAGCTGCTGATGTTCTTTTCTAGGTTTGGAGAAATTGAGGAGGGGCCACTGGGGCTTGATAAGATGACTGGGAGGCCTAAAGGATTTTGTTTGTTTGTGTATAAGTCCCAGAGAAATTTTGACGGACACATTTTGCATTGCCAGAAGGCTATTGACGGTCCAAAGCCGGTCAAGTCTCAGCACCCGAACCAGCACCACCACAAATCCCATAATTCCAAGTTTCAGAGGAATGAGAATCCGGGTTATGTTGGTGGAGCTGCGGCAGGAATGGGGCATTTGATGGCGCCAGCAAGTGGTGGGATTGGGTTTAACCAGGGTGCTGCGGCCGCCCAGGCATTGAATCCGGCACTTGGGCGGTCACTGACTGCATTGTTTGCGACTCAGGGGGCTGGTTTGGGGCTGACAAACCTTTTGGGAACTTTTGGAACGGCTCCGAATGTGAACCCGGGTGTTCCTGGTGCAGGACATGCCATACAGGGTGGGTATGCGAATCAGGCAAGTATAAGCCCTGGAATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGGTGGCTCCCCGAACCCGCAGATAGGGCAAGGTGGTTCAGGAAGAGGGCAGCATGGTGTTGGGCAATCTGGTGGCGCTCCTTGCTTGGGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

356

Amino Acids

36.94

Weight (kDa)

9.64

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 244
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 2 cut(s) 128, 371
AfiI CCNNNNNNNGG 7 cut(s) 283, 301, 716, 773, 884, 995, 1058
AgsI TTSAA 2 cut(s) 205, 763
AjnI CCWGG 6 cut(s) 295, 339, 735, 753, 877, 931
AluBI AGCT 4 cut(s) 280, 427, 680, 948
AluI AGCT 4 cut(s) 280, 427, 680, 948
Alw26I GTCTC 2 cut(s) 172, 603
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 868
AoxI GGCC 8 cut(s) 3, 13, 292, 298, 345, 467, 497, 747
ApeKI GCWGC 6 cut(s) 238, 317, 427, 680, 743, 1021
ApoI RAATTY 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AspLEI GCGC 2 cut(s) 709, 1049
AspS9I GGNCC 9 cut(s) 4, 14, 46, 293, 299, 337, 346, 467, 581
AsuC2I CCSGG 5 cut(s) 302, 421, 663, 869, 870
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 3 cut(s) 46, 337, 581
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 2 cut(s) 81, 223
BbvI GCAGC 6 cut(s) 250, 304, 414, 667, 730, 1033
BccI CCATC 3 cut(s) 78, 697, 934
BceAI ACGGC 1 cut(s) 867
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 6 cut(s) 297, 341, 737, 755, 879, 933
BcnI CCSGG 5 cut(s) 302, 421, 663, 869, 870
BcoDI GTCTC 2 cut(s) 172, 603
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 2 cut(s) 710, 1050
BglI GCCNNNNNGGC 3 cut(s) 21, 475, 755
BglII AGATCT 2 cut(s) 63, 384
Bme18I GGWCC 3 cut(s) 46, 337, 581
BmeT110I CYCGRG 1 cut(s) 868
BmgT120I GGNCC 9 cut(s) 4, 14, 46, 293, 299, 337, 346, 467, 581
BmiI GGNNCC 7 cut(s) 48, 306, 417, 468, 708, 855, 979
BmrI ACTGGG 3 cut(s) 343, 482, 501
BmuI ACTGGG 3 cut(s) 343, 482, 501
BpuMI CCSGG 5 cut(s) 302, 421, 663, 869, 870
BsaHI GRCGYC 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 9 cut(s) 73, 180, 242, 295, 419, 736, 753, 868, 931
Bsc4I CCNNNNNNNGG 7 cut(s) 283, 301, 716, 773, 884, 995, 1058
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 3 cut(s) 349, 477, 496
Bse3DI GCAATG 3 cut(s) 403, 559, 972
BseBI CCWGG 6 cut(s) 297, 341, 737, 755, 879, 933
BseDI CCNNGG 9 cut(s) 73, 180, 242, 295, 419, 736, 753, 868, 931
BseGI GGATG 2 cut(s) 89, 270
BseLI CCNNNNNNNGG 7 cut(s) 283, 301, 716, 773, 884, 995, 1058
BseMI GCAATG 3 cut(s) 403, 559, 972
BseMII CTCAG 2 cut(s) 614, 818
BseNI ACTGG 3 cut(s) 349, 477, 496
BseRI GAGGAG 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 747
BseXI GCAGC 6 cut(s) 250, 304, 414, 667, 730, 1033
BsgI GTGCAG 1 cut(s) 903
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 8 cut(s) 5, 15, 294, 300, 347, 469, 499, 749
BshNI GGYRCC 1 cut(s) 706
BsiEI CGRYCG 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 6 cut(s) 302, 421, 590, 662, 767, 869
BslFI GGGAC 3 cut(s) 46, 101, 514
BslI CCNNNNNNNGG 7 cut(s) 283, 301, 716, 773, 884, 995, 1058
BsmAI GTCTC 2 cut(s) 172, 603
BsmFI GGGAC 3 cut(s) 46, 101, 514
BsnI GGCC 8 cut(s) 5, 15, 294, 300, 347, 469, 499, 749
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 81, 223
Bsp143I GATC 4 cut(s) 51, 63, 252, 384
BspANI GGCC 8 cut(s) 5, 15, 294, 300, 347, 469, 499, 749
BspCNI CTCAG 2 cut(s) 613, 817
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 7 cut(s) 48, 306, 417, 468, 708, 855, 979
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 3 cut(s) 403, 559, 972
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 3 cut(s) 349, 477, 496
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 9 cut(s) 73, 180, 242, 295, 419, 736, 753, 868, 931
BssMI GATC 4 cut(s) 51, 63, 252, 384
BssNI GRCGYC 1 cut(s) 707
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 6 cut(s) 297, 341, 737, 755, 879, 933
Bst4CI ACNGT 3 cut(s) 131, 361, 581
Bst6I CTCTTC 1 cut(s) 1009
BstACI GRCGYC 1 cut(s) 707
BstAPI GCANNNNNTGC 2 cut(s) 797, 890
BstC8I GCNNGC 4 cut(s) 274, 278, 282, 711
BstDEI CTNAG 2 cut(s) 600, 804
BstDSI CCRYGG 2 cut(s) 73, 242
BstENI CCTNNNNNAGG 1 cut(s) 882
BstF5I GGATG 2 cut(s) 89, 270
BstFNI CGCG 1 cut(s) 244
BstH2I RGCGCY 2 cut(s) 710, 1050
BstHHI GCGC 2 cut(s) 709, 1049
BstKTI GATC 4 cut(s) 54, 66, 255, 387
BstMAI GTCTC 2 cut(s) 172, 603
BstMBI GATC 4 cut(s) 51, 63, 252, 384
BstMCI CGRYCG 1 cut(s) 750
BstNI CCWGG 6 cut(s) 297, 341, 737, 755, 879, 933
BstNSI RCATGY 1 cut(s) 893
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 6 cut(s) 250, 304, 414, 667, 730, 1033
BstX2I RGATCY 2 cut(s) 63, 384
BstYI RGATCY 2 cut(s) 63, 384
BstZI CGGCCG 1 cut(s) 747
BsuRI GGCC 8 cut(s) 5, 15, 294, 300, 347, 469, 499, 749
BtgI CCRYGG 2 cut(s) 73, 242
BtsCI GGATG 2 cut(s) 89, 270
BtsIMutI CAGTG 3 cut(s) 366, 470, 782
Cac8I GCNNGC 4 cut(s) 274, 278, 282, 711
CciNI GCGGCCGC 1 cut(s) 747
CfoI GCGC 2 cut(s) 709, 1049
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 9 cut(s) 4, 14, 46, 293, 299, 337, 346, 467, 581
Cfr42I CCGCGG 1 cut(s) 245
Cfr9I CCCGGG 1 cut(s) 868
Csp6I GTAC 2 cut(s) 127, 370
CviAII CATG 2 cut(s) 890, 1025
CviQI GTAC 2 cut(s) 127, 370
DdeI CTNAG 2 cut(s) 600, 804
DinI GGCGCC 1 cut(s) 708
DpnI GATC 4 cut(s) 53, 65, 254, 386
DpnII GATC 4 cut(s) 51, 63, 252, 384
EaeI YGGCCR 1 cut(s) 747
EagI CGGCCG 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 1009
EarI CTCTTC 1 cut(s) 1009
EciI GGCGGA 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 81, 223
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 3 cut(s) 46, 337, 581
Eco52I CGGCCG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 868
EcoNI CCTNNNNNAGG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 6 cut(s) 295, 339, 735, 753, 877, 931
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 2 cut(s) 81, 223
EgeI GGCGCC 1 cut(s) 708
EheI GGCGCC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 893, 1028
FaqI GGGAC 3 cut(s) 46, 101, 514
FatI CATG 2 cut(s) 889, 1024
FauI CCCGC 1 cut(s) 996
FokI GGATG 2 cut(s) 96, 277
FriOI GRGCYC 2 cut(s) 81, 223
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 708, 1048
HaeII RGCGCY 2 cut(s) 710, 1050
HaeIII GGCC 8 cut(s) 5, 15, 294, 300, 347, 469, 499, 749
HapII CCGG 6 cut(s) 302, 421, 590, 662, 767, 869
HhaI GCGC 2 cut(s) 709, 1049
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 2 cut(s) 893, 1028
Hin6I GCGC 2 cut(s) 707, 1047
HinP1I GCGC 2 cut(s) 707, 1047
HinfI GANTC 5 cut(s) 208, 658, 763, 802, 913
HpaII CCGG 6 cut(s) 302, 421, 590, 662, 767, 869
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 372, 865
Hpy188I TCNGA 6 cut(s) 83, 264, 309, 367, 648, 858
Hpy188III TCNNGA 2 cut(s) 205, 1011
Hpy8I GTNNAC 2 cut(s) 372, 865
HpyAV CCTTC 2 cut(s) 241, 562
HpyCH4III ACNGT 3 cut(s) 131, 361, 581
HpyCH4V TGCA 6 cut(s) 147, 559, 791, 884, 965, 970
HpyF3I CTNAG 2 cut(s) 600, 804
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 2 cut(s) 893, 1028
HspAI GCGC 2 cut(s) 707, 1047
KasI GGCGCC 1 cut(s) 706
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 4 cut(s) 51, 63, 252, 384
LmnI GCTCC 5 cut(s) 310, 677, 859, 983, 1054
Lsp1109I GCAGC 6 cut(s) 250, 304, 414, 667, 730, 1033
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 780
MalI GATC 4 cut(s) 53, 65, 254, 386
MboI GATC 4 cut(s) 51, 63, 252, 384
MboII GAAGA 3 cut(s) 58, 394, 1026
MflI RGATCY 2 cut(s) 63, 384
MhlI GDGCHC 2 cut(s) 81, 223
MluCI AATT 3 cut(s) 456, 538, 634
Mly113I GGCGCC 1 cut(s) 707
MlyI GAGTC 2 cut(s) 202, 796
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 14, 37, 133, 372, 454, 457, 489, 642, 1010
MseI TTAA 2 cut(s) 120, 732
MspA1I CMGCKG 4 cut(s) 244, 280, 317, 323
MspI CCGG 6 cut(s) 302, 421, 590, 662, 767, 869
MvaI CCWGG 6 cut(s) 297, 341, 737, 755, 879, 933
MvnI CGCG 1 cut(s) 244
NarI GGCGCC 1 cut(s) 707
NciI CCSGG 5 cut(s) 302, 421, 663, 869, 870
NdeII GATC 4 cut(s) 51, 63, 252, 384
NlaIII CATG 2 cut(s) 893, 1028
NlaIV GGNNCC 7 cut(s) 48, 306, 417, 468, 708, 855, 979
NmuCI GTSAC 1 cut(s) 780
NotI GCGGCCGC 1 cut(s) 747
NspI RCATGY 1 cut(s) 893
PceI AGGCCT 1 cut(s) 499
PfeI GAWTC 3 cut(s) 658, 763, 913
PflFI GACNNNGTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 716
PleI GAGTC 2 cut(s) 202, 796
PluTI GGCGCC 1 cut(s) 710
PpsI GAGTC 2 cut(s) 202, 796
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 6 cut(s) 295, 339, 735, 753, 877, 931
PspGI CCWGG 6 cut(s) 295, 339, 735, 753, 877, 931
PspN4I GGNNCC 7 cut(s) 48, 306, 417, 468, 708, 855, 979
PspPI GGNCC 9 cut(s) 4, 14, 46, 293, 299, 337, 346, 467, 581
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 2 cut(s) 63, 384
PsyI GACNNNGTC 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 128, 371
RsaNI GTAC 2 cut(s) 127, 370
SacII CCGCGG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 120, 732
Sau3AI GATC 4 cut(s) 51, 63, 252, 384
Sau96I GGNCC 9 cut(s) 4, 14, 46, 293, 299, 337, 346, 467, 581
SchI GAGTC 2 cut(s) 202, 796
SduI GDGCHC 2 cut(s) 81, 223
SfoI GGCGCC 1 cut(s) 708
Sfr303I CCGCGG 1 cut(s) 245
SgrBI CCGCGG 1 cut(s) 245
SinI GGWCC 3 cut(s) 46, 337, 581
SmaI CCCGGG 1 cut(s) 870
Sse9I AATT 3 cut(s) 456, 538, 634
SseBI AGGCCT 1 cut(s) 499
SspDI GGCGCC 1 cut(s) 706
SspMI CTAG 1 cut(s) 444
StuI AGGCCT 1 cut(s) 499
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 131, 361, 581
TaqI TCGA 1 cut(s) 223
TasI AATT 3 cut(s) 456, 538, 634
TatI WGTACW 1 cut(s) 369
TauI GCSGC 9 cut(s) 15, 244, 287, 317, 323, 347, 686, 749, 752
TfiI GAWTC 3 cut(s) 658, 763, 913
Tru1I TTAA 2 cut(s) 120, 732
Tru9I TTAA 2 cut(s) 120, 732
TscAI CASTG 3 cut(s) 366, 477, 789
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 6 cut(s) 238, 317, 427, 680, 743, 1021
Tsp45I GTSAC 1 cut(s) 780
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 561
TspMI CCCGGG 1 cut(s) 868
TspRI CASTG 3 cut(s) 366, 477, 789
Tth111I GACNNNGTC 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 3 cut(s) 46, 337, 581
XagI CCTNNNNNAGG 1 cut(s) 882
XapI RAATTY 1 cut(s) 538
XceI RCATGY 1 cut(s) 893
XmaI CCCGGG 1 cut(s) 868
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.