Rmu_sc0008091.1_g000001

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008091.1
OG0001435
Physical Location & Seq
Forward (+)
744 .. 1607
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008091.1_g000001.1.cds

Sequence Viewer

Length: 864 bp
atggacaagctcaccggcaagaccaaaggctacggcttcgtcctcttcaagacccgccgaggcgccctcaaggccttgaaggagcccaagaagagcatcggcaaccgcagcgcctcctgccagctggcctcggtgggcccggggaacaatacggcggcgccctcttcgtcgtcgagcgggggccagtcggactcggcggggaggaagatttacgtcagcggcgtgccgcatgaggccgacgccgagaaattgagggctttgtttgggagatttggggaaattgagaccgggccgatggggttcgattcgcagaccggaaagtctagagggtttgctttgttcttgtacaagagtgtggaaggtgcaaagaaggcacttgaggaaccggtgaaggtgtttgaagggcaccaattgaactgccagaaggccactgaggggtcaaagaacaagaatgccgtggcgccggcacagcagcagacgcaggctccgccactggccgcggttcccggggcgcagaatatggcgtttttcggacagtacccgggattgaatccgctgtatggtggattgatgaccaatgtaggaggtgcattggttcctgggtctggtaacccggctatgatggcccggccgttgaacccgggtttactggcgggggcattgaaccctggtgtgtttccagctggacagtatggtcaggtgggtgctggtgttggtgggtttggcggtgtgtctcatgggatggggagtttcggtgggggaggctcgttgcttggcgcatacgggtcaattgcaccgcttcctgcaatgcagagtctgcagcatgtttatccaagttcacagacggggcagacggctacagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006366 GO:0006396 GO:0006397 GO:0006401 GO:0006417 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009299 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032268 GO:0032270 GO:0032501 GO:0032774 GO:0032991 GO:0033043 GO:0033044 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042752 GO:0042789 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043565 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0046700 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097167 GO:0097659 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902680 GO:1903311 GO:1903506 GO:1903508 GO:1904353 GO:1904355 GO:1905661 GO:1905663 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

288

Amino Acids

29.23

Weight (kDa)

9.74

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 319, 693
AccB1I GGYRCC 4 cut(s) 62, 157, 405, 460
AccBSI CCGCTC 1 cut(s) 177
AccII CGCG 1 cut(s) 500
AcoI YGGCCR 2 cut(s) 495, 629
AcyI GRCGYC 4 cut(s) 63, 158, 240, 461
AfaI GTAC 2 cut(s) 347, 539
AfiI CCNNNNNNNGG 3 cut(s) 435, 560, 605
AgeI ACCGGT 1 cut(s) 385
AgsI TTSAA 7 cut(s) 49, 79, 401, 415, 550, 637, 664
AjnI CCWGG 2 cut(s) 598, 667
AluBI AGCT 3 cut(s) 10, 124, 683
AluI AGCT 3 cut(s) 10, 124, 683
Alw26I GTCTC 2 cut(s) 278, 738
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 4 cut(s) 139, 506, 541, 640
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 108, 472, 820
AsiGI ACCGGT 1 cut(s) 385
AspLEI GCGC 6 cut(s) 65, 113, 160, 463, 514, 779
AspS9I GGNCC 5 cut(s) 136, 137, 181, 290, 625
AsuHPI GGTGA 2 cut(s) 4, 400
AvaI CYCGRG 4 cut(s) 139, 506, 541, 640
BaeGI GKGCMC 2 cut(s) 140, 408
BanI GGYRCC 4 cut(s) 62, 157, 405, 460
BanII GRGCYC 2 cut(s) 87, 140
BbvI GCAGC 3 cut(s) 120, 484, 832
BccI CCATC 3 cut(s) 289, 616, 736
BceAI ACGGC 4 cut(s) 49, 168, 440, 616
BciT130I CCWGG 2 cut(s) 600, 669
BcoDI GTCTC 2 cut(s) 278, 738
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 2 cut(s) 818, 858
BfoI RGCGCY 4 cut(s) 66, 114, 161, 464
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 7 cut(s) 109, 156, 220, 227, 473, 498, 821
BlsI GCNGC 7 cut(s) 110, 157, 221, 228, 474, 499, 822
BmeT110I CYCGRG 4 cut(s) 139, 506, 541, 640
BmgT120I GGNCC 5 cut(s) 136, 137, 181, 290, 625
BmsI GCATC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpuEI CTTGAG 2 cut(s) 53, 398
BsaHI GRCGYC 4 cut(s) 63, 158, 240, 461
BsaI GGTCTC 1 cut(s) 278
BsaWI WCCGGW 2 cut(s) 314, 385
BsaXI ACNNNNNCTCC 4 cut(s) 469, 499, 739, 769
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 560, 605
Bse118I RCCGGY 3 cut(s) 14, 385, 463
Bse1I ACTGG 3 cut(s) 184, 498, 654
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 2 cut(s) 600, 669
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 435, 560, 605
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 184, 498, 654
BseSI GKGCMC 2 cut(s) 140, 408
BseX3I CGGCCG 1 cut(s) 629
BseXI GCAGC 3 cut(s) 120, 484, 832
Bsh1236I CGCG 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 632
BshNI GGYRCC 4 cut(s) 62, 157, 405, 460
BshTI ACCGGT 1 cut(s) 385
BsiEI CGRYCG 1 cut(s) 632
BsiHKCI CYCGRG 4 cut(s) 139, 506, 541, 640
BslI CCNNNNNNNGG 3 cut(s) 435, 560, 605
BsmAI GTCTC 2 cut(s) 278, 738
BsmI GAATGC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 4 cut(s) 139, 506, 541, 640
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 87, 140, 408
Bsp1407I TGTACA 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 500
BspMAI CTGCAG 1 cut(s) 822
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 4 cut(s) 62, 157, 405, 460
BspTNI GGTCTC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 3 cut(s) 14, 385, 463
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 3 cut(s) 184, 498, 654
BssAI RCCGGY 3 cut(s) 14, 385, 463
BssNI GRCGYC 4 cut(s) 63, 158, 240, 461
Bst2UI CCWGG 2 cut(s) 600, 669
Bst4CI ACNGT 3 cut(s) 537, 690, 862
Bst6I CTCTTC 3 cut(s) 50, 86, 169
BstACI GRCGYC 4 cut(s) 63, 158, 240, 461
BstAPI GCANNNNNTGC 1 cut(s) 817
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 5 cut(s) 122, 126, 224, 465, 483
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 2 cut(s) 456, 498
BstEII GGTNACC 1 cut(s) 608
BstF5I GGATG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 500
BstH2I RGCGCY 4 cut(s) 66, 114, 161, 464
BstHHI GCGC 6 cut(s) 65, 113, 160, 463, 514, 779
BstMAI GTCTC 2 cut(s) 278, 738
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 9 cut(s) 71, 108, 117, 371, 469, 478, 487, 623, 817
BstNI CCWGG 2 cut(s) 600, 669
BstNSI RCATGY 1 cut(s) 827
BstPI GGTNACC 1 cut(s) 608
BstSFI CTRYAG 2 cut(s) 818, 858
BstSLI GKGCMC 2 cut(s) 140, 408
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 3 cut(s) 120, 484, 832
BstZI CGGCCG 1 cut(s) 629
BtgI CCRYGG 2 cut(s) 456, 498
BtsCI GGATG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 429, 491
Cac8I GCNNGC 5 cut(s) 122, 126, 224, 465, 483
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 6 cut(s) 65, 113, 160, 463, 514, 779
Cfr10I RCCGGY 3 cut(s) 14, 385, 463
Cfr13I GGNCC 5 cut(s) 136, 137, 181, 290, 625
Cfr42I CCGCGG 1 cut(s) 501
Cfr9I CCCGGG 4 cut(s) 139, 506, 541, 640
CseI GACGC 2 cut(s) 248, 487
Csp6I GTAC 2 cut(s) 346, 538
CspAI ACCGGT 1 cut(s) 385
CviAII CATG 3 cut(s) 230, 737, 824
CviQI GTAC 2 cut(s) 346, 538
DdeI CTNAG 1 cut(s) 432
DinI GGCGCC 3 cut(s) 64, 159, 462
DrdI GACNNNNNNGTC 2 cut(s) 319, 693
DseDI GACNNNNNNGTC 2 cut(s) 319, 693
EaeI YGGCCR 2 cut(s) 495, 629
EagI CGGCCG 1 cut(s) 629
Eam1104I CTCTTC 3 cut(s) 50, 86, 169
EarI CTCTTC 3 cut(s) 50, 86, 169
EciI GGCGGA 1 cut(s) 477
EclXI CGGCCG 1 cut(s) 629
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 87, 140
Eco31I GGTCTC 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 629
Eco88I CYCGRG 4 cut(s) 139, 506, 541, 640
Eco91I GGTNACC 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 598, 667
EcoT38I GRGCYC 2 cut(s) 87, 140
EgeI GGCGCC 3 cut(s) 64, 159, 462
EheI GGCGCC 3 cut(s) 64, 159, 462
FaeI CATG 3 cut(s) 233, 740, 827
FaiI YATR 8 cut(s) 231, 521, 561, 620, 693, 738, 781, 825
FatI CATG 3 cut(s) 229, 736, 823
FauI CCCGC 4 cut(s) 62, 170, 190, 646
Fnu4HI GCNGC 7 cut(s) 109, 156, 220, 227, 473, 498, 821
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 2 cut(s) 87, 140
Fsp4HI GCNGC 7 cut(s) 109, 156, 220, 227, 473, 498, 821
FspBI CTAG 1 cut(s) 324
GlaI GCGC 6 cut(s) 64, 112, 159, 462, 513, 778
GluI GCNGC 7 cut(s) 109, 156, 220, 227, 473, 498, 821
HaeII RGCGCY 4 cut(s) 66, 114, 161, 464
HgaI GACGC 2 cut(s) 248, 487
HhaI GCGC 6 cut(s) 65, 113, 160, 463, 514, 779
Hin1I GRCGYC 4 cut(s) 63, 158, 240, 461
Hin1II CATG 3 cut(s) 233, 740, 827
Hin6I GCGC 6 cut(s) 63, 111, 158, 461, 512, 777
HinP1I GCGC 6 cut(s) 63, 111, 158, 461, 512, 777
HinfI GANTC 4 cut(s) 191, 305, 550, 814
HphI GGTGA 2 cut(s) 4, 400
Hpy166II GTNNAC 2 cut(s) 647, 839
Hpy188I TCNGA 2 cut(s) 190, 533
Hpy188III TCNNGA 2 cut(s) 49, 324
Hpy8I GTNNAC 2 cut(s) 647, 839
Hpy99I CGWCG 3 cut(s) 172, 175, 242
HpyAV CCTTC 6 cut(s) 73, 353, 364, 385, 395, 418
HpyCH4III ACNGT 3 cut(s) 537, 690, 862
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 365, 590, 794, 806, 811, 820
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 108, 117, 371, 469, 478, 487, 623, 817
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 4 cut(s) 63, 158, 240, 461
Hsp92II CATG 3 cut(s) 233, 740, 827
HspAI GCGC 6 cut(s) 63, 111, 158, 461, 512, 777
KasI GGCGCC 3 cut(s) 62, 157, 460
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
KspI CCGCGG 1 cut(s) 501
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 82, 490
Lsp1109I GCAGC 3 cut(s) 120, 484, 832
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 608
MbiI CCGCTC 1 cut(s) 177
MboII GAAGA 4 cut(s) 37, 103, 156, 217
MfeI CAATTG 2 cut(s) 410, 789
MhlI GDGCHC 3 cut(s) 87, 140, 408
MluCI AATT 4 cut(s) 248, 279, 410, 789
Mly113I GGCGCC 3 cut(s) 63, 158, 461
MlyI GAGTC 2 cut(s) 185, 823
MmeI TCCRAC 1 cut(s) 168
MroNI GCCGGC 1 cut(s) 463
MspA1I CMGCKG 5 cut(s) 124, 219, 500, 556, 683
MunI CAATTG 2 cut(s) 410, 789
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 600, 669
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 9 cut(s) 71, 108, 117, 371, 469, 478, 487, 623, 817
NaeI GCCGGC 1 cut(s) 465
NarI GGCGCC 3 cut(s) 63, 158, 461
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 3 cut(s) 233, 740, 827
NmeAIII GCCGAG 3 cut(s) 83, 173, 268
NspI RCATGY 1 cut(s) 827
PceI AGGCCT 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 457
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 305, 550
PinAI ACCGGT 1 cut(s) 385
PkrI GCNGC 7 cut(s) 110, 157, 221, 228, 474, 499, 822
PleI GAGTC 2 cut(s) 185, 822
PluTI GGCGCC 3 cut(s) 66, 161, 464
PpsI GAGTC 2 cut(s) 185, 822
Psp6I CCWGG 2 cut(s) 598, 667
PspEI GGTNACC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 598, 667
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 5 cut(s) 136, 137, 181, 290, 625
PstI CTGCAG 1 cut(s) 822
PstNI CAGNNNCTG 1 cut(s) 817
PvuII CAGCTG 2 cut(s) 124, 683
RsaI GTAC 2 cut(s) 347, 539
RsaNI GTAC 2 cut(s) 346, 538
SacII CCGCGG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 7 cut(s) 109, 156, 220, 227, 473, 498, 821
Sau96I GGNCC 5 cut(s) 136, 137, 181, 290, 625
SchI GAGTC 2 cut(s) 185, 823
SduI GDGCHC 3 cut(s) 87, 140, 408
SetI ASST 8 cut(s) 12, 126, 216, 364, 396, 589, 685, 702
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 818, 858
SfoI GGCGCC 3 cut(s) 64, 159, 462
Sfr303I CCGCGG 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 501
SmaI CCCGGG 4 cut(s) 141, 508, 543, 642
SmlI CTYRAG 2 cut(s) 68, 377
SmoI CTYRAG 2 cut(s) 68, 377
Sse9I AATT 4 cut(s) 248, 279, 410, 789
SseBI AGGCCT 1 cut(s) 74
SspDI GGCGCC 3 cut(s) 62, 157, 460
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 74
TaaI ACNGT 3 cut(s) 537, 690, 862
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 173, 303
TasI AATT 4 cut(s) 248, 279, 410, 789
TatI WGTACW 1 cut(s) 345
TauI GCSGC 4 cut(s) 158, 222, 229, 500
TfiI GAWTC 2 cut(s) 305, 550
TscAI CASTG 2 cut(s) 436, 498
TseI GCWGC 3 cut(s) 108, 472, 820
TspMI CCCGGG 4 cut(s) 139, 506, 541, 640
TspRI CASTG 2 cut(s) 436, 498
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 827
XmaI CCCGGG 4 cut(s) 139, 506, 541, 640
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.