RLG00000018294

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001435
Physical Location & Seq
Forward (+)
28018272 .. 28022679
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018294

Sequence Viewer

Length: 1512 bp
ATGGCCAGAAAGCGAAAGCTCGATTCCAACTCCACCGAGGCCTCCGAGCCGGCTAAGAAGCAGCAGCAGCAGCAGCAGCAGCCGGAGGTCGTCGAGGAGCCGAAGCCCCAGAACGAACCGGCCGAGGAGGTAGAAGAAGAGGTCGAGGAGGTAGAAGAGGCTGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGTACGAGGAGGAAGAAGAGGTTGAGGAAGAGCCTGGCGTTGAGTACATGCAGAACACCGAGACTTTAACCGTGACGACGACCACCACGACGTCGTCGGTGGATCCAGTTCAACCCGTGGCCGGCGGCGAGGAGAACGGCGGCGGTGAGGATGATGAGGACGAGCCGATTCAGGATCTTCTGGAGCCGTTTAGTAAGGACCAGCTGGTTAGTCTGCTGAAGGAGGCCGCGGAGAGCCACCGTGACGTGTCGGATCGGATCCGGAAGGTTGCGGACGAGGATCCGATCCACCGGAAGATCTTTGTCCACGGCCTTGGGTGGGACACCACCGCCGAAACCCTAACCAGCGTGTTTACGGAGTACGGTGAGATTGAGGATTGCAAGGCTGTGTGTGATAAGGTCTCTGGAAAGTCCAAGGGTTATGGTTTCATTCTCTTCAAGACGCGGTCCGGGGCTCGGAAAGCTTTGAAACAGCCGCAGAAGAAGATCGGAAATCGGATGACTGCTTGTCAGTTGGCCTCGTTGGGCCCGGCGGCGACGCCGAGTGCCCCTGGCCCTGCTGCGGTGGCCCCGGCCCAGCCGGTTTCGGAGTACACTTTGAGGAAGATCTATGTGAGCAATGTTGGGGCGGATTTAGACCCTCAGAAGCTGCTTATGTTCTTTTCGAGGTTTGGAGAAATTGAAGAAGGGCCGTTGGGTTTGGATAAGGCGACTGGAAGGCCGAAAGGATTTTGCTTGTTTGTGTACAAGTCGGCAGAGAGTGCAAAGAGGGCTCTGGAGGAGCCGCACAAGAATTTCGATGGACACATTTTGCACTGCCAGAAGGCTATTGATGGTCCGAAGCCAGTGAAGTCTCAGCACGGGAACCAGCACCACCACAATAGGAATAAGAATTCCGGTTTTGGTGGCGGAGCACCAGCGGGACCTGGCCATATGATGGCGCCAGGAGGTGCTGGAATTGGGTTTAACCAGGGGGCTGCATCAACCCAGGCATTGAACCCAGCGCTTGGGCAGGCCCTGGCTTTGCTTGCTACACAGGGAGCTGGCCTAAATCTTTTTGGGACTTTGGGAGCTCAAGGTGTGAACCCTGGTGTGCCTGGTGGAGCACATGGAATACAAAGGAGGCTACCCCAACCCACAGTTGGGCCAAGGTGGATCAGGAAGAGGGCCACATGGTCTTGGGCAATATGGTGGTGCTCCATACACGGGGCACTAGATGCCCCTGAGGCCGAAAGAAGAGTCATTGCATGTTTCGAGGTGTGGAAATGTAAATTGCTCATCTTTGGTGGGTCATCAAGGAATTTGGTTGCATGGAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

504

Amino Acids

54.76

Weight (kDa)

5.11

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 163 - 229 7.2e-14 RNA recognition motif
RRM_1 PF00076 266 - 334 1.7e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 2 cut(s) 1126, 1196
AccII CGCG 2 cut(s) 419, 634
AccIII TCCGGA 1 cut(s) 450
AcoI YGGCCR 4 cut(s) 3, 120, 309, 1117
AcsI RAATTY 3 cut(s) 982, 1081, 1489
AcuI CTGAAG 1 cut(s) 428
AcyI GRCGYC 3 cut(s) 281, 728, 1130
AfaI GTAC 5 cut(s) 194, 236, 551, 782, 935
AfeI AGCGCT 1 cut(s) 1194
AfiI CCNNNNNNNGG 9 cut(s) 311, 508, 645, 751, 1126, 1196, 1331, 1332, 1395
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 5 cut(s) 302, 628, 658, 872, 1186
AhdI GACNNNNNGTC 1 cut(s) 696
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 9 cut(s) 223, 739, 1114, 1132, 1158, 1176, 1206, 1276, 1285
AluBI AGCT 6 cut(s) 19, 394, 653, 838, 1232, 1262
AluI AGCT 6 cut(s) 19, 394, 653, 838, 1232, 1262
Alw21I GWGCWC 4 cut(s) 1105, 1264, 1297, 1388
Alw26I GTCTC 3 cut(s) 245, 595, 1047
AlwNI CAGNNNCTG 2 cut(s) 838, 1207
Aor13HI TCCGGA 1 cut(s) 450
Aor51HI AGCGCT 1 cut(s) 1194
ApaI GGGCCC 1 cut(s) 719
ApoI RAATTY 3 cut(s) 982, 1081, 1489
ArsI GACNNNNNNTTYG 2 cut(s) 1413, 1445
AspLEI GCGC 2 cut(s) 1132, 1195
AsuC2I CCSGG 3 cut(s) 640, 719, 761
AsuHPI GGTGA 2 cut(s) 347, 566
AvaII GGWCC 4 cut(s) 388, 636, 1025, 1112
AxyI CCTNAGG 1 cut(s) 1413
BaeGI GKGCMC 3 cut(s) 719, 739, 1402
BalI TGGCCA 2 cut(s) 5, 1119
BamHI GGATCC 3 cut(s) 292, 447, 469
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 4 cut(s) 646, 719, 964, 1264
Bbv12I GWGCWC 4 cut(s) 1105, 1264, 1297, 1388
BbvCI CCTCAGC 1 cut(s) 162
BccI CCATC 3 cut(s) 983, 1016, 1120
BceAI ACGGC 4 cut(s) 343, 361, 514, 865
BciT130I CCWGG 9 cut(s) 225, 741, 1116, 1134, 1160, 1178, 1208, 1278, 1287
BcnI CCSGG 3 cut(s) 640, 719, 761
BcoDI GTCTC 3 cut(s) 245, 595, 1047
BfaI CTAG 1 cut(s) 1403
BfoI RGCGCY 2 cut(s) 1133, 1196
BglI GCCNNNNNGGC 1 cut(s) 1415
BglII AGATCT 2 cut(s) 486, 795
Bme18I GGWCC 4 cut(s) 388, 636, 1025, 1112
BmeRI GACNNNNNGTC 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 436
BmsI GCATC 2 cut(s) 1178, 1396
BpmI CTGGAG 2 cut(s) 392, 986
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 1248
BpuMI CCSGG 3 cut(s) 640, 719, 761
BsaHI GRCGYC 3 cut(s) 281, 728, 1130
BsaI GGTCTC 1 cut(s) 595
BsaWI WCCGGW 3 cut(s) 450, 480, 1085
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 9 cut(s) 311, 508, 645, 751, 1126, 1196, 1331, 1332, 1395
Bse118I RCCGGY 4 cut(s) 49, 118, 311, 769
Bse1I ACTGG 3 cut(s) 296, 907, 1034
Bse21I CCTNAGG 1 cut(s) 1413
Bse3DI GCAATG 2 cut(s) 814, 1431
BseAI TCCGGA 1 cut(s) 450
BseBI CCWGG 9 cut(s) 225, 741, 1116, 1134, 1160, 1178, 1208, 1278, 1287
BseGI GGATG 2 cut(s) 346, 693
BseLI CCNNNNNNNGG 9 cut(s) 311, 508, 645, 751, 1126, 1196, 1331, 1332, 1395
BseMI GCAATG 2 cut(s) 814, 1431
BseMII CTCAG 4 cut(s) 153, 845, 1058, 1404
BseNI ACTGG 3 cut(s) 296, 907, 1034
BseSI GKGCMC 3 cut(s) 719, 739, 1402
BseX3I CGGCCG 1 cut(s) 120
BseYI CCCAGC 2 cut(s) 765, 1189
Bsh1236I CGCG 2 cut(s) 419, 634
Bsh1285I CGRYCG 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 1129
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 4 cut(s) 1105, 1264, 1297, 1388
BslFI GGGAC 3 cut(s) 524, 1125, 1264
BslI CCNNNNNNNGG 9 cut(s) 311, 508, 645, 751, 1126, 1196, 1331, 1332, 1395
BsmAI GTCTC 3 cut(s) 245, 595, 1047
BsmFI GGGAC 3 cut(s) 524, 1125, 1264
Bso31I GGTCTC 1 cut(s) 595
Bsp120I GGGCCC 1 cut(s) 715
Bsp1286I GDGCHC 9 cut(s) 646, 719, 739, 964, 1105, 1264, 1297, 1388, 1402
Bsp13I TCCGGA 1 cut(s) 450
Bsp1407I TGTACA 1 cut(s) 933
BspCNI CTCAG 4 cut(s) 154, 844, 1057, 1405
BspEI TCCGGA 1 cut(s) 450
BspFNI CGCG 2 cut(s) 419, 634
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 2 cut(s) 814, 1431
BsrFI RCCGGY 4 cut(s) 49, 118, 311, 769
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 3 cut(s) 296, 907, 1034
BssAI RCCGGY 4 cut(s) 49, 118, 311, 769
BssNI GRCGYC 3 cut(s) 281, 728, 1130
BssT1I CCWWGG 3 cut(s) 502, 603, 1337
Bst2UI CCWGG 9 cut(s) 225, 741, 1116, 1134, 1160, 1178, 1208, 1278, 1287
Bst4CI ACNGT 4 cut(s) 262, 431, 554, 1330
Bst6I CTCTTC 8 cut(s) 132, 150, 165, 201, 213, 629, 1346, 1420
BstACI GRCGYC 3 cut(s) 281, 728, 1130
BstAPI GCANNNNNTGC 2 cut(s) 950, 1406
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 5 cut(s) 51, 313, 1203, 1218, 1234
BstDEI CTNAG 5 cut(s) 54, 162, 831, 1044, 1413
BstDSI CCRYGG 3 cut(s) 306, 417, 496
BstF5I GGATG 2 cut(s) 346, 693
BstFNI CGCG 2 cut(s) 419, 634
BstH2I RGCGCY 2 cut(s) 1133, 1196
BstHHI GCGC 2 cut(s) 1132, 1195
BstMAI GTCTC 3 cut(s) 245, 595, 1047
BstMCI CGRYCG 1 cut(s) 123
BstNI CCWGG 9 cut(s) 225, 741, 1116, 1134, 1160, 1178, 1208, 1278, 1287
BstNSI RCATGY 2 cut(s) 241, 1440
BstSLI GKGCMC 3 cut(s) 719, 739, 1402
BstUI CGCG 2 cut(s) 419, 634
BstX2I RGATCY 6 cut(s) 292, 364, 447, 469, 486, 795
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 6 cut(s) 292, 364, 447, 469, 486, 795
BstZI CGGCCG 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 1413
BtgI CCRYGG 3 cut(s) 306, 417, 496
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 346, 693
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 2 cut(s) 1003, 1041
Cac8I GCNNGC 5 cut(s) 51, 313, 1203, 1218, 1234
CaiI CAGNNNCTG 2 cut(s) 838, 1207
CfoI GCGC 2 cut(s) 1132, 1195
Cfr10I RCCGGY 4 cut(s) 49, 118, 311, 769
Cfr42I CCGCGG 1 cut(s) 420
CpoI CGGWCCG 1 cut(s) 636
CseI GACGC 2 cut(s) 640, 736
Csp6I GTAC 5 cut(s) 193, 235, 550, 781, 934
CspI CGGWCCG 1 cut(s) 636
CviAII CATG 5 cut(s) 238, 1298, 1362, 1437, 1500
CviQI GTAC 5 cut(s) 193, 235, 550, 781, 934
DdeI CTNAG 5 cut(s) 54, 162, 831, 1044, 1413
DinI GGCGCC 1 cut(s) 1131
DriI GACNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 4 cut(s) 3, 120, 309, 1117
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 8 cut(s) 132, 150, 165, 201, 213, 629, 1346, 1420
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 8 cut(s) 132, 150, 165, 201, 213, 629, 1346, 1420
EciI GGCGGA 2 cut(s) 833, 1113
Ecl136II GAGCTC 1 cut(s) 1262
EclXI CGGCCG 1 cut(s) 120
Eco130I CCWWGG 3 cut(s) 502, 603, 1337
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 4 cut(s) 646, 719, 964, 1264
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 4 cut(s) 388, 636, 1025, 1112
Eco47III AGCGCT 1 cut(s) 1194
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 1262
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 1413
EcoICRI GAGCTC 1 cut(s) 1262
EcoO109I RGGNCCY 2 cut(s) 1112, 1204
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 9 cut(s) 223, 739, 1114, 1132, 1158, 1176, 1206, 1276, 1285
EcoT14I CCWWGG 3 cut(s) 502, 603, 1337
EcoT38I GRGCYC 4 cut(s) 646, 719, 964, 1264
EgeI GGCGCC 1 cut(s) 1131
EheI GGCGCC 1 cut(s) 1131
ErhI CCWWGG 3 cut(s) 502, 603, 1337
FaeI CATG 5 cut(s) 241, 1301, 1365, 1440, 1503
FaqI GGGAC 3 cut(s) 524, 1125, 1264
FatI CATG 5 cut(s) 237, 1297, 1361, 1436, 1499
FauI CCCGC 1 cut(s) 1102
FauNDI CATATG 1 cut(s) 1122
FokI GGATG 2 cut(s) 353, 700
FriOI GRGCYC 4 cut(s) 646, 719, 964, 1264
FspBI CTAG 1 cut(s) 1403
GlaI GCGC 2 cut(s) 1131, 1194
GsaI CCCAGC 2 cut(s) 769, 1193
GsuI CTGGAG 2 cut(s) 392, 986
HaeII RGCGCY 2 cut(s) 1133, 1196
HgaI GACGC 2 cut(s) 640, 736
HhaI GCGC 2 cut(s) 1132, 1195
Hin1I GRCGYC 3 cut(s) 281, 728, 1130
Hin1II CATG 5 cut(s) 241, 1301, 1365, 1440, 1503
Hin6I GCGC 2 cut(s) 1130, 1193
HinP1I GCGC 2 cut(s) 1130, 1193
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 3 cut(s) 23, 358, 1428
HphI GGTGA 2 cut(s) 347, 566
Hpy166II GTNNAC 5 cut(s) 496, 543, 783, 934, 1273
Hpy188III TCNNGA 7 cut(s) 362, 371, 451, 594, 628, 965, 1348
Hpy8I GTNNAC 5 cut(s) 496, 543, 783, 934, 1273
Hpy99I CGWCG 6 cut(s) 95, 271, 283, 286, 289, 730
HpyAV CCTTC 6 cut(s) 403, 448, 869, 900, 1006, 1498
HpyCH4III ACNGT 4 cut(s) 262, 431, 554, 1330
HpyCH4IV ACGT 2 cut(s) 281, 435
HpyCH4V TGCA 7 cut(s) 241, 570, 953, 1003, 1169, 1436, 1499
HpyF3I CTNAG 5 cut(s) 54, 162, 831, 1044, 1413
HpySE526I ACGT 2 cut(s) 281, 435
Hsp92I GRCGYC 3 cut(s) 281, 728, 1130
Hsp92II CATG 5 cut(s) 241, 1301, 1365, 1440, 1503
HspAI GCGC 2 cut(s) 1130, 1193
KasI GGCGCC 1 cut(s) 1129
Kpn2I TCCGGA 1 cut(s) 450
KroI GCCGGC 2 cut(s) 49, 311
KroNI GCCGGC 2 cut(s) 51, 313
KspI CCGCGG 1 cut(s) 420
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 8 cut(s) 97, 373, 970, 1100, 1229, 1259, 1292, 1391
LweI GCATC 2 cut(s) 1178, 1396
MaeI CTAG 1 cut(s) 1403
MaeII ACGT 2 cut(s) 281, 435
MaeIII GTNAC 2 cut(s) 262, 431
MflI RGATCY 6 cut(s) 292, 364, 447, 469, 486, 795
MhlI GDGCHC 9 cut(s) 646, 719, 739, 964, 1105, 1264, 1297, 1388, 1402
MlsI TGGCCA 2 cut(s) 5, 1119
MluCI AATT 6 cut(s) 867, 982, 1081, 1146, 1460, 1489
MluNI TGGCCA 2 cut(s) 5, 1119
Mly113I GGCGCC 1 cut(s) 1130
MlyI GAGTC 1 cut(s) 1437
MmeI TCCRAC 2 cut(s) 51, 420
Mox20I TGGCCA 2 cut(s) 5, 1119
MroI TCCGGA 1 cut(s) 450
MroNI GCCGGC 2 cut(s) 49, 311
MscI TGGCCA 2 cut(s) 5, 1119
MseI TTAA 2 cut(s) 257, 1155
Msp20I TGGCCA 2 cut(s) 5, 1119
MspA1I CMGCKG 3 cut(s) 394, 419, 1109
MvaI CCWGG 9 cut(s) 225, 741, 1116, 1134, 1160, 1178, 1208, 1278, 1287
MvnI CGCG 2 cut(s) 419, 634
NaeI GCCGGC 2 cut(s) 51, 313
NarI GGCGCC 1 cut(s) 1130
NciI CCSGG 3 cut(s) 640, 719, 761
NdeI CATATG 1 cut(s) 1122
NgoMIV GCCGGC 2 cut(s) 49, 311
NlaIII CATG 5 cut(s) 241, 1301, 1365, 1440, 1503
NmeAIII GCCGAG 2 cut(s) 148, 756
NmuCI GTSAC 2 cut(s) 262, 431
NspI RCATGY 2 cut(s) 241, 1440
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 275
PdiI GCCGGC 2 cut(s) 51, 313
PfeI GAWTC 2 cut(s) 23, 358
PflFI GACNNNGTC 2 cut(s) 283, 634
PflMI CCANNNNNTGG 2 cut(s) 1126, 1196
PleI GAGTC 1 cut(s) 1436
PluTI GGCGCC 1 cut(s) 1133
PpsI GAGTC 1 cut(s) 1436
PpuMI RGGWCCY 1 cut(s) 1112
Psp124BI GAGCTC 1 cut(s) 1264
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 9 cut(s) 223, 739, 1114, 1132, 1158, 1176, 1206, 1276, 1285
PspFI CCCAGC 2 cut(s) 765, 1189
PspGI CCWGG 9 cut(s) 223, 739, 1114, 1132, 1158, 1176, 1206, 1276, 1285
PspOMI GGGCCC 1 cut(s) 715
PspPPI RGGWCCY 1 cut(s) 1112
PstNI CAGNNNCTG 2 cut(s) 838, 1207
PsuI RGATCY 6 cut(s) 292, 364, 447, 469, 486, 795
PsyI GACNNNGTC 2 cut(s) 283, 634
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 5 cut(s) 194, 236, 551, 782, 935
RsaNI GTAC 5 cut(s) 193, 235, 550, 781, 934
Rsr2I CGGWCCG 1 cut(s) 636
RsrII CGGWCCG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 1264
SacII CCGCGG 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 257, 1155
SchI GAGTC 1 cut(s) 1437
SduI GDGCHC 9 cut(s) 646, 719, 739, 964, 1105, 1264, 1297, 1388, 1402
SfaNI GCATC 2 cut(s) 1178, 1396
SfoI GGCGCC 1 cut(s) 1131
Sfr303I CCGCGG 1 cut(s) 420
SgrBI CCGCGG 1 cut(s) 420
SinI GGWCC 4 cut(s) 388, 636, 1025, 1112
SmlI CTYRAG 1 cut(s) 1263
SmoI CTYRAG 1 cut(s) 1263
Sse9I AATT 6 cut(s) 867, 982, 1081, 1146, 1460, 1489
SseBI AGGCCT 1 cut(s) 41
SspDI GGCGCC 1 cut(s) 1129
SspMI CTAG 1 cut(s) 1403
SstI GAGCTC 1 cut(s) 1264
StuI AGGCCT 1 cut(s) 41
StyI CCWWGG 3 cut(s) 502, 603, 1337
TaaI ACNGT 4 cut(s) 262, 431, 554, 1330
TaiI ACGT 2 cut(s) 284, 438
TaqI TCGA 6 cut(s) 21, 93, 144, 854, 987, 1443
TasI AATT 6 cut(s) 867, 982, 1081, 1146, 1460, 1489
TatI WGTACW 3 cut(s) 234, 780, 933
TauI GCSGC 6 cut(s) 318, 333, 419, 667, 725, 976
TfiI GAWTC 2 cut(s) 23, 358
Tru1I TTAA 2 cut(s) 257, 1155
Tru9I TTAA 2 cut(s) 257, 1155
TscAI CASTG 2 cut(s) 1010, 1041
TseFI GTSAC 2 cut(s) 262, 431
Tsp45I GTSAC 2 cut(s) 262, 431
TspDTI ATGAA 1 cut(s) 607
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 2 cut(s) 1010, 1041
Tth111I GACNNNGTC 2 cut(s) 283, 634
Van91I CCANNNNNTGG 2 cut(s) 1126, 1196
VpaK11BI GGWCC 4 cut(s) 388, 636, 1025, 1112
XapI RAATTY 3 cut(s) 982, 1081, 1489
XceI RCATGY 2 cut(s) 241, 1440
XcmI CCANNNNNNNNNTGG 1 cut(s) 1328
XspI CTAG 1 cut(s) 1403
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.