MD13G1221000.v1.1

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001435
Physical Location & Seq
Reverse (-)
21397001 .. 21397771
771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1221000.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGCTCTGGTGAAGAAATCCGAAGAGTCCAGATTTTATGTTGTCGCCCTCCTCTTCTACGCTGCCGATAACCACGGCGACGTGGCGGATCGAATCCGAAAGGTTGCGGATGAGGACCCAATCCACCACAAGATCTTCGTCCATGGTCTCGGATGGGACACCAACGCCGAAACCCTAACTGGTGTGTTTAAGGAATTGCTCATTTTGATGGGTCTGAGCGTGGATTGCAAAGAGAGACGCAGATCTTGGCAGTTGCGACGACGGAGCCTTGGCGATATTATCGATAATATCGCGATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

101

Amino Acids

11.53

Weight (kDa)

6.9

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 293
AciI CCGC 2 cut(s) 86, 107
AclWI GGATC 1 cut(s) 96
AjiI CACGTC 1 cut(s) 82
Alw26I GTCTC 2 cut(s) 152, 229
AlwI GGATC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 147, 202
BceAI ACGGC 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 152, 229
BglII AGATCT 2 cut(s) 132, 242
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 117, 266
Bsa29I ATCGAT 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 73, 142, 268
Bse1I ACTGG 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 73, 142, 268
BseGI GGATG 2 cut(s) 115, 158
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 282
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 152, 229
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 88, 132, 242
Bsp19I CCATGG 1 cut(s) 142
Bsp68I TCGCGA 1 cut(s) 293
BspACI CCGC 2 cut(s) 86, 107
BspCNI CTCAG 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 117, 266
BspPI GGATC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 73, 142, 268
BssMI GATC 3 cut(s) 88, 132, 242
BssT1I CCWWGG 2 cut(s) 142, 268
Bst6I CTCTTC 2 cut(s) 18, 59
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 2 cut(s) 73, 142
BstF5I GGATG 2 cut(s) 115, 158
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 3 cut(s) 91, 135, 245
BstMAI GTCTC 2 cut(s) 152, 229
BstMBI GATC 3 cut(s) 88, 132, 242
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 132, 242
BstYI RGATCY 2 cut(s) 132, 242
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 73, 142
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 115, 158
BtuMI TCGCGA 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 246
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 5, 267
CviKI_1 RGCY 2 cut(s) 5, 267
DdeI CTNAG 1 cut(s) 215
DpnI GATC 3 cut(s) 90, 134, 244
DpnII GATC 3 cut(s) 88, 132, 242
Eam1104I CTCTTC 2 cut(s) 18, 59
EarI CTCTTC 2 cut(s) 18, 59
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 142, 268
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 142, 268
ErhI CCWWGG 2 cut(s) 142, 268
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 39, 144, 298
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 122, 165
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HgaI GACGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 26, 93
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 22, 98, 152, 216
Hpy188III TCNNGA 2 cut(s) 30, 292
Hpy99I CGWCG 3 cut(s) 83, 261, 264
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 3 cut(s) 88, 132, 242
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 2 cut(s) 43, 165
Lsp1109I GCAGC 1 cut(s) 49
MaeII ACGT 1 cut(s) 81
MalI GATC 3 cut(s) 90, 134, 244
MboI GATC 3 cut(s) 88, 132, 242
MboII GAAGA 4 cut(s) 25, 35, 46, 127
MflI RGATCY 2 cut(s) 132, 242
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 59, 62, 106
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 206
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 142
NdeII GATC 3 cut(s) 88, 132, 242
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 117, 266
NruI TCGCGA 1 cut(s) 293
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 117, 266
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 2 cut(s) 132, 242
RruI TCGCGA 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 88, 132, 242
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 35
SetI ASST 2 cut(s) 84, 105
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 1 cut(s) 194
SsiI CCGC 2 cut(s) 86, 107
StyI CCWWGG 2 cut(s) 142, 268
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 91, 282
TasI AATT 1 cut(s) 194
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.