Rmu_co8234039.1_g000001

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8234039.1
OG0001435
Physical Location & Seq
Reverse (-)
2 .. 761
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8234039.1_g000001.1.cds

Sequence Viewer

Length: 760 bp
cacgagcacgagcacgacgacgacctccgcctcaaacagccccaaaacgggtcggacacggactcggactccgacccggagaccctgtcccagctcctggagccctactccaaggagcagctcatctccctcataaccgacgccgcctccaacgactcctccctcttcaaacgcatccgcgacgccgccgacgccgacgtctcgcaccgcaagatattcgtccacggcctcggatgggacaccacccgcgaaaccctagtctccgccttccagccctacggcgacgtcgaggactccaatctggtaatggacaagctcaccggcaagaccaaaggctacggcttcgtcctcttcaagacccgccgaggcgccctcaaggccttgaaggagcccaagaagagcatcggcaaccgcagcgcctcctgccagctggcctcggtgggcccggggaacaatacggcggcgccctcttcgtcgtcgagcgggggccagtcggactcggcggggaggaagatttacgtcagcggcgtgccgcatgaggccgacgccgagaaattgagggctttgtttgggagatttggggaaattgagaccgggccgatggggttcgattcgcagaccggaaagtctagagggtttgctttgttcttgtacaagagtgtggaaggtgcaaagaaggcacttgaggaaccggtgaaggtgtttgaagggcaccaattgaactgccagaaggccactgaggggtcaaagaacaagaatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006366 GO:0006396 GO:0006397 GO:0006401 GO:0006417 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009299 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032268 GO:0032270 GO:0032501 GO:0032774 GO:0032991 GO:0033043 GO:0033044 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042752 GO:0042789 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043565 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0046700 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097167 GO:0097659 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902680 GO:1903311 GO:1903506 GO:1903508 GO:1904353 GO:1904355 GO:1905661 GO:1905663 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

253

Amino Acids

27.44

Weight (kDa)

6.43

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 197, 625
AatII GACGTC 2 cut(s) 201, 288
AccB1I GGYRCC 3 cut(s) 368, 463, 711
AccB7I CCANNNNNTGG 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 483
AccII CGCG 2 cut(s) 180, 249
AcyI GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 5 cut(s) 47, 48, 97, 235, 741
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 5 cut(s) 169, 355, 385, 707, 721
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 4 cut(s) 94, 121, 316, 430
AluI AGCT 4 cut(s) 94, 121, 316, 430
Alw21I GWGCWC 2 cut(s) 9, 15
Alw26I GTCTC 4 cut(s) 74, 205, 265, 584
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 8 cut(s) 226, 378, 432, 442, 487, 540, 596, 732
ApaI GGGCCC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 118, 414
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AsiGI ACCGGT 1 cut(s) 691
AspLEI GCGC 3 cut(s) 371, 419, 466
AspS9I GGNCC 4 cut(s) 442, 443, 487, 596
AsuC2I CCSGG 4 cut(s) 77, 446, 447, 595
AsuHPI GGTGA 2 cut(s) 310, 706
AvaI CYCGRG 1 cut(s) 445
BaeGI GKGCMC 2 cut(s) 446, 714
BanI GGYRCC 3 cut(s) 368, 463, 711
BanII GRGCYC 3 cut(s) 105, 393, 446
BauI CACGAG 2 cut(s) 2, 8
Bbv12I GWGCWC 2 cut(s) 9, 15
BbvI GCAGC 2 cut(s) 130, 426
BccI CCATC 2 cut(s) 228, 595
BceAI ACGGC 4 cut(s) 241, 295, 355, 474
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 4 cut(s) 77, 446, 447, 595
BcoDI GTCTC 4 cut(s) 74, 205, 265, 584
BfaI CTAG 2 cut(s) 257, 630
BfoI RGCGCY 3 cut(s) 372, 420, 467
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 7 cut(s) 119, 144, 186, 415, 462, 526, 533
BlsI GCNGC 7 cut(s) 120, 145, 187, 416, 463, 527, 534
Bme1390I CCNGG 5 cut(s) 77, 98, 446, 447, 595
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 442, 443, 487, 596
BmiI GGNNCC 8 cut(s) 102, 370, 390, 444, 465, 488, 690, 713
BmrFI CCNGG 5 cut(s) 77, 98, 446, 447, 595
BmsI GCATC 2 cut(s) 183, 411
BplI GAGNNNNNCTC 4 cut(s) 92, 124, 357, 389
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 359, 704
BpuMI CCSGG 4 cut(s) 77, 446, 447, 595
BsaHI GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
BsaI GGTCTC 2 cut(s) 74, 584
BsaJI CCNNGG 7 cut(s) 111, 223, 229, 364, 435, 445, 446
BsaWI WCCGGW 2 cut(s) 620, 691
BsaXI ACNNNNNCTCC 8 cut(s) 53, 71, 83, 101, 131, 143, 161, 173
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 48, 97, 235, 741
Bse118I RCCGGY 2 cut(s) 320, 691
Bse1I ACTGG 1 cut(s) 490
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 7 cut(s) 111, 223, 229, 364, 435, 445, 446
BseGI GGATG 2 cut(s) 174, 239
BseLI CCNNNNNNNGG 5 cut(s) 47, 48, 97, 235, 741
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 446, 714
BseXI GCAGC 2 cut(s) 130, 426
BseYI CCCAGC 1 cut(s) 90
Bsh1236I CGCG 2 cut(s) 180, 249
BshFI GGCC 8 cut(s) 228, 380, 434, 444, 489, 542, 598, 734
BshNI GGYRCC 3 cut(s) 368, 463, 711
BshTI ACCGGT 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 9, 15
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 6 cut(s) 77, 321, 446, 594, 621, 692
BslFI GGGAC 2 cut(s) 73, 251
BslI CCNNNNNNNGG 5 cut(s) 47, 48, 97, 235, 741
BsmAI GTCTC 4 cut(s) 74, 205, 265, 584
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 73, 251
BsnI GGCC 8 cut(s) 228, 380, 434, 444, 489, 542, 598, 734
Bso31I GGTCTC 2 cut(s) 74, 584
BsoBI CYCGRG 1 cut(s) 445
Bsp120I GGGCCC 1 cut(s) 442
Bsp1286I GDGCHC 6 cut(s) 9, 15, 105, 393, 446, 714
Bsp1407I TGTACA 1 cut(s) 651
BspANI GGCC 8 cut(s) 228, 380, 434, 444, 489, 542, 598, 734
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 2 cut(s) 180, 249
BspLI GGNNCC 8 cut(s) 102, 370, 390, 444, 465, 488, 690, 713
BspQI GCTCTTC 1 cut(s) 392
BspT107I GGYRCC 3 cut(s) 368, 463, 711
BspTNI GGTCTC 2 cut(s) 74, 584
BsrBI CCGCTC 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 320, 691
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 490
BssAI RCCGGY 2 cut(s) 320, 691
BssECI CCNNGG 7 cut(s) 111, 223, 229, 364, 435, 445, 446
BssNI GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
BssSI CACGAG 2 cut(s) 2, 8
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 2 cut(s) 2, 8
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 4 cut(s) 170, 356, 392, 475
BstACI GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 428, 432, 530
BstDEI CTNAG 1 cut(s) 738
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 174, 239
BstFNI CGCG 2 cut(s) 180, 249
BstH2I RGCGCY 3 cut(s) 372, 420, 467
BstHHI GCGC 3 cut(s) 371, 419, 466
BstMAI GTCTC 4 cut(s) 74, 205, 265, 584
BstMWI GCNNNNNNNGC 6 cut(s) 100, 191, 377, 414, 423, 677
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 5 cut(s) 75, 96, 444, 445, 593
BstSLI GKGCMC 2 cut(s) 446, 714
BstUI CGCG 2 cut(s) 180, 249
BstV1I GCAGC 2 cut(s) 130, 426
BsuRI GGCC 8 cut(s) 228, 380, 434, 444, 489, 542, 598, 734
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 174, 239
BtsIMutI CAGTG 1 cut(s) 735
Cac8I GCNNGC 3 cut(s) 428, 432, 530
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 3 cut(s) 371, 419, 466
Cfr10I RCCGGY 2 cut(s) 320, 691
Cfr13I GGNCC 4 cut(s) 442, 443, 487, 596
Cfr9I CCCGGG 1 cut(s) 445
CseI GACGC 4 cut(s) 149, 191, 200, 554
Csp6I GTAC 1 cut(s) 652
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 1 cut(s) 536
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 1 cut(s) 738
DinI GGCGCC 2 cut(s) 370, 465
DrdI GACNNNNNNGTC 2 cut(s) 197, 625
DseDI GACNNNNNNGTC 2 cut(s) 197, 625
Eam1104I CTCTTC 4 cut(s) 170, 356, 392, 475
EarI CTCTTC 4 cut(s) 170, 356, 392, 475
EciI GGCGGA 2 cut(s) 17, 253
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 380
Eco24I GRGCYC 3 cut(s) 105, 393, 446
Eco31I GGTCTC 2 cut(s) 74, 584
Eco88I CYCGRG 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 3 cut(s) 105, 393, 446
EgeI GGCGCC 2 cut(s) 370, 465
EheI GGCGCC 2 cut(s) 370, 465
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 1 cut(s) 539
FaiI YATR 2 cut(s) 134, 537
FaqI GGGAC 2 cut(s) 73, 251
FatI CATG 1 cut(s) 535
FauI CCCGC 4 cut(s) 254, 368, 476, 496
Fnu4HI GCNGC 7 cut(s) 119, 144, 186, 415, 462, 526, 533
FokI GGATG 2 cut(s) 161, 246
FriOI GRGCYC 3 cut(s) 105, 393, 446
Fsp4HI GCNGC 7 cut(s) 119, 144, 186, 415, 462, 526, 533
FspBI CTAG 2 cut(s) 257, 630
GlaI GCGC 3 cut(s) 370, 418, 465
GluI GCNGC 7 cut(s) 119, 144, 186, 415, 462, 526, 533
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 3 cut(s) 372, 420, 467
HaeIII GGCC 8 cut(s) 228, 380, 434, 444, 489, 542, 598, 734
HapII CCGG 6 cut(s) 77, 321, 446, 594, 621, 692
HgaI GACGC 4 cut(s) 149, 191, 200, 554
HhaI GCGC 3 cut(s) 371, 419, 466
Hin1I GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
Hin1II CATG 1 cut(s) 539
Hin6I GCGC 3 cut(s) 369, 417, 464
HinP1I GCGC 3 cut(s) 369, 417, 464
HinfI GANTC 6 cut(s) 62, 68, 155, 293, 497, 611
HpaII CCGG 6 cut(s) 77, 321, 446, 594, 621, 692
HphI GGTGA 2 cut(s) 310, 706
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 55, 67, 73, 233, 496
Hpy188III TCNNGA 2 cut(s) 355, 630
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 7 cut(s) 277, 379, 659, 670, 691, 701, 724
HpyCH4IV ACGT 3 cut(s) 198, 285, 519
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 191, 377, 414, 423, 677
HpyF3I CTNAG 1 cut(s) 738
HpySE526I ACGT 3 cut(s) 198, 285, 519
Hsp92I GRCGYC 8 cut(s) 141, 183, 192, 198, 285, 369, 464, 546
Hsp92II CATG 1 cut(s) 539
HspAI GCGC 3 cut(s) 369, 417, 464
KasI GGCGCC 2 cut(s) 368, 463
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 4 cut(s) 99, 100, 115, 388
Lsp1109I GCAGC 2 cut(s) 130, 426
LweI GCATC 2 cut(s) 183, 411
MaeI CTAG 2 cut(s) 257, 630
MaeII ACGT 3 cut(s) 198, 285, 519
MbiI CCGCTC 1 cut(s) 483
MboII GAAGA 5 cut(s) 157, 343, 409, 462, 523
MfeI CAATTG 1 cut(s) 716
MhlI GDGCHC 6 cut(s) 9, 15, 105, 393, 446, 714
MluCI AATT 3 cut(s) 554, 585, 716
Mly113I GGCGCC 2 cut(s) 369, 464
MlyI GAGTC 5 cut(s) 56, 62, 149, 287, 491
MmeI TCCRAC 4 cut(s) 33, 96, 174, 474
MspA1I CMGCKG 2 cut(s) 430, 525
MspI CCGG 6 cut(s) 77, 321, 446, 594, 621, 692
MspR9I CCNGG 5 cut(s) 77, 98, 446, 447, 595
MunI CAATTG 1 cut(s) 716
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 2 cut(s) 180, 249
MwoI GCNNNNNNNGC 6 cut(s) 100, 191, 377, 414, 423, 677
NarI GGCGCC 2 cut(s) 369, 464
NciI CCSGG 4 cut(s) 77, 446, 447, 595
NlaIII CATG 1 cut(s) 539
NlaIV GGNNCC 8 cut(s) 102, 370, 390, 444, 465, 488, 690, 713
NmeAIII GCCGAG 3 cut(s) 389, 479, 574
PceI AGGCCT 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 285, 525
PfeI GAWTC 1 cut(s) 611
PflFI GACNNNGTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 7 cut(s) 120, 145, 187, 416, 463, 527, 534
PleI GAGTC 5 cut(s) 56, 62, 149, 287, 491
PluTI GGCGCC 2 cut(s) 372, 467
PpsI GAGTC 5 cut(s) 56, 62, 149, 287, 491
Psp6I CCWGG 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 8 cut(s) 102, 370, 390, 444, 465, 488, 690, 713
PspOMI GGGCCC 1 cut(s) 442
PspPI GGNCC 4 cut(s) 442, 443, 487, 596
PstNI CAGNNNCTG 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SapI GCTCTTC 1 cut(s) 392
SatI GCNGC 7 cut(s) 119, 144, 186, 415, 462, 526, 533
Sau96I GGNCC 4 cut(s) 442, 443, 487, 596
SchI GAGTC 5 cut(s) 56, 62, 149, 287, 491
ScrFI CCNGG 5 cut(s) 77, 98, 446, 447, 595
SduI GDGCHC 6 cut(s) 9, 15, 105, 393, 446, 714
SfaNI GCATC 2 cut(s) 183, 411
SfoI GGCGCC 2 cut(s) 370, 465
SmaI CCCGGG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 374, 683
SmoI CTYRAG 2 cut(s) 374, 683
Sse9I AATT 3 cut(s) 554, 585, 716
SseBI AGGCCT 1 cut(s) 380
SspDI GGCGCC 2 cut(s) 368, 463
SspMI CTAG 2 cut(s) 257, 630
StuI AGGCCT 1 cut(s) 380
StyD4I CCNGG 5 cut(s) 75, 96, 444, 445, 593
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 3 cut(s) 201, 288, 522
TaqI TCGA 3 cut(s) 288, 479, 609
TasI AATT 3 cut(s) 554, 585, 716
TatI WGTACW 1 cut(s) 651
TauI GCSGC 5 cut(s) 146, 188, 464, 528, 535
TfiI GAWTC 1 cut(s) 611
TscAI CASTG 1 cut(s) 742
TseI GCWGC 2 cut(s) 118, 414
TspGWI ACGGA 1 cut(s) 74
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 1 cut(s) 742
Tth111I GACNNNGTC 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmaI CCCGGG 1 cut(s) 445
XspI CTAG 2 cut(s) 257, 630
ZraI GACGTC 2 cut(s) 199, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.