Rorug02G0200600

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001435
Physical Location & Seq
Forward (+)
18753466 .. 18754452
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0200600.1

Sequence Viewer

Length: 846 bp
ATGAGTGACTCTAAGGTTGTTCTAGTCACAGGTTGTGCCAGAGGCGGGATCGGCTACGAGTACTGCAAAGCTTTTGCTGAGCACAAATGCAAGGTCTTTGCAAGTGACATCGCCCAACGCATGGACGACATTGACCTCAAGTCTTTGGATAGTTATGACATTGACAAGCTCGAGCTCGATGTGTCCTCGGATCAAAGCGTGGAATCGGCCGTCAACACTATTATATCCAAGTGCGGTCGCATCGATGTAGTGATCAACAATGCCGGGATTGGAAGCACCGGTCCTCTAGCTGAGCTTCCGCTAGAGACTATTAGAAGGGCCTGGGAAATTAACACGTTGGGACAATTGAGGTTGGTCCAGCAAGTTGTGCCACACATGGCGTCACGGCGCAGTGGCAGCATTGTAAATATTGGGAGCATAGTGGGCAAAGTGCCGACCCCTTGGGCAGGGTCATATTGTGCAAGCAAGGCATATGTTCATGCCGTGTCAAACACTTTGAGGGTGGAACTGAAGCCATTTGGGATTGATGTGGTGCTTGTAATGCCTGGGGCGGTAAGGTCGAATTTTGGGAGTGCTAATGTTGGTAGATTGGCGAATCATGATTGGAAACTCTACAAGGATTTCAAGGAGGCAATTGCAGAGAGAGCTGCGGCTTCTCAAGGAGTTAAAGCAACTGAGGCTAGTGTGTTTGCTAAGCATGTGGCACAGAAGGTTTTGGGTCCTAAACCACCAAGGGTAATTACTTTTGGTCACATGACTGGTTTGTTTGCTGTGCTTTCTTGCTCTCCACTTTGGGTGAGAGATCTTTTCCTTTCAACTCGTTTCAACTTAAACAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006366 GO:0006396 GO:0006397 GO:0006401 GO:0006417 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009299 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032268 GO:0032270 GO:0032501 GO:0032774 GO:0032991 GO:0033043 GO:0033044 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042752 GO:0042789 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043565 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0046700 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097167 GO:0097659 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902680 GO:1903311 GO:1903506 GO:1903508 GO:1904353 GO:1904355 GO:1905661 GO:1905663 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

281

Amino Acids

30.48

Weight (kDa)

9.19

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 5 - 189 2.3e-46 short chain dehydrogenase
SDR PF23441 6 - 198 7.8e-09 SDR-like rossmann domain
KR PF08659 7 - 167 3.3e-08 KR domain
adh_short_C2 PF13561 12 - 192 3.9e-34 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 5 cut(s) 45, 234, 299, 551, 650
AclWI GGATC 2 cut(s) 56, 198
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 45, 121, 446
AflIII ACRYGT 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 625, 816, 826
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 320, 544
AluBI AGCT 6 cut(s) 71, 169, 175, 290, 295, 647
AluI AGCT 6 cut(s) 71, 169, 175, 290, 295, 647
Alw21I GWGCWC 2 cut(s) 84, 177
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 56, 198
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 207, 318
ApeKI GCWGC 2 cut(s) 396, 647
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 281, 318, 355, 719
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 808
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 281, 355, 719
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 84, 177
BbvI GCAGC 2 cut(s) 408, 634
BceAI ACGGC 3 cut(s) 194, 401, 467
BciT130I CCWGG 2 cut(s) 322, 546
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 4 cut(s) 23, 287, 302, 681
BglII AGATCT 1 cut(s) 802
BisI GCNGC 3 cut(s) 397, 648, 651
BlpI GCTNAGC 3 cut(s) 78, 291, 693
BlsI GCNGC 3 cut(s) 398, 649, 652
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 265, 322, 546
Bme18I GGWCC 3 cut(s) 281, 355, 719
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 4 cut(s) 281, 318, 355, 719
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 3 cut(s) 265, 322, 546
BmsI GCATC 1 cut(s) 249
Bpu1102I GCTNAGC 3 cut(s) 78, 291, 693
BpuEI CTTGAG 2 cut(s) 122, 642
BpuMI CCSGG 1 cut(s) 265
Bsa29I ATCGAT 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 5 cut(s) 186, 321, 440, 545, 731
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 121, 446
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 763
BseBI CCWGG 2 cut(s) 322, 546
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 5 cut(s) 186, 321, 440, 545, 731
BseLI CCNNNNNNNGG 3 cut(s) 45, 121, 446
BseMII CTCAG 3 cut(s) 69, 282, 666
BseNI ACTGG 1 cut(s) 763
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 408, 634
Bsh1285I CGRYCG 2 cut(s) 210, 238
BshFI GGCC 2 cut(s) 209, 320
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 2 cut(s) 210, 238
BsiHKAI GWGCWC 2 cut(s) 84, 177
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 264, 279
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 45, 121, 446
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 209, 320
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 84, 177
Bsp143I GATC 4 cut(s) 48, 190, 252, 802
Bsp1720I GCTNAGC 3 cut(s) 78, 291, 693
BspACI CCGC 5 cut(s) 45, 234, 299, 551, 650
BspANI GGCC 2 cut(s) 209, 320
BspCNI CTCAG 3 cut(s) 70, 283, 667
BspDI ATCGAT 1 cut(s) 243
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 2 cut(s) 56, 198
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 186, 321, 440, 545, 731
BssMI GATC 4 cut(s) 48, 190, 252, 802
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 440, 731
Bst2UI CCWGG 2 cut(s) 322, 546
BstACI GRCGYC 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 5 cut(s) 12, 78, 291, 675, 693
BstENI CCTNNNNNAGG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 51, 193, 255, 805
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 4 cut(s) 48, 190, 252, 802
BstMCI CGRYCG 2 cut(s) 210, 238
BstMWI GCNNNNNNNGC 8 cut(s) 51, 367, 396, 423, 467, 541, 644, 677
BstNI CCWGG 2 cut(s) 322, 546
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 263, 320, 544
BstV1I GCAGC 2 cut(s) 408, 634
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BstZI CGGCCG 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 2 cut(s) 209, 320
BsuTUI ATCGAT 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 463
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 4 cut(s) 281, 318, 355, 719
ClaI ATCGAT 1 cut(s) 243
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 6 cut(s) 121, 376, 479, 599, 698, 754
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 5 cut(s) 12, 78, 291, 675, 693
DpnI GATC 4 cut(s) 50, 192, 254, 804
DpnII GATC 4 cut(s) 48, 190, 252, 802
DriI GACNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 440, 731
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 3 cut(s) 281, 355, 719
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO109I RGGNCCY 2 cut(s) 318, 719
EcoRII CCWGG 2 cut(s) 320, 544
EcoT14I CCWWGG 2 cut(s) 440, 731
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 440, 731
FaeI CATG 6 cut(s) 124, 379, 482, 602, 701, 757
FaqI GGGAC 1 cut(s) 354
FatI CATG 6 cut(s) 120, 375, 478, 598, 697, 753
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 397, 648, 651
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 397, 648, 651
FspBI CTAG 4 cut(s) 23, 287, 302, 681
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 397, 648, 651
HaeIII GGCC 2 cut(s) 209, 320
HapII CCGG 2 cut(s) 264, 279
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 6 cut(s) 124, 379, 482, 602, 701, 757
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 8, 203, 595
HpaII CCGG 2 cut(s) 264, 279
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 599
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 309, 703
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 5 cut(s) 66, 90, 101, 461, 638
HpyF10VI GCNNNNNNNGC 8 cut(s) 51, 367, 396, 423, 467, 541, 644, 677
HpyF3I CTNAG 5 cut(s) 12, 78, 291, 675, 693
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 6 cut(s) 124, 379, 482, 602, 701, 757
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 48, 190, 252, 802
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 408, 634
LweI GCATC 1 cut(s) 249
MaeI CTAG 4 cut(s) 23, 287, 302, 681
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 5 cut(s) 5, 25, 104, 381, 749
MalI GATC 4 cut(s) 50, 192, 254, 804
MboI GATC 4 cut(s) 48, 190, 252, 802
MfeI CAATTG 2 cut(s) 344, 633
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 2 cut(s) 84, 177
MluCI AATT 5 cut(s) 327, 344, 562, 633, 738
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 8 cut(s) 35, 146, 196, 294, 342, 492, 622, 670
MseI TTAA 3 cut(s) 330, 666, 830
MspI CCGG 2 cut(s) 264, 279
MspR9I CCNGG 3 cut(s) 265, 322, 546
MunI CAATTG 2 cut(s) 344, 633
MvaI CCWGG 2 cut(s) 322, 546
MwoI GCNNNNNNNGC 8 cut(s) 51, 367, 396, 423, 467, 541, 644, 677
NciI CCSGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 48, 190, 252, 802
NlaIII CATG 6 cut(s) 124, 379, 482, 602, 701, 757
NlaIV GGNNCC 1 cut(s) 720
NmuCI GTSAC 5 cut(s) 5, 25, 104, 381, 749
NspI RCATGY 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 170
PagI TCATGA 1 cut(s) 598
PfeI GAWTC 2 cut(s) 203, 595
PflMI CCANNNNNTGG 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 3 cut(s) 398, 649, 652
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PpuMI RGGWCCY 1 cut(s) 719
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 320, 544
PspGI CCWGG 2 cut(s) 320, 544
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 4 cut(s) 281, 318, 355, 719
PspPPI RGGWCCY 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 170
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 330, 666, 830
SatI GCNGC 3 cut(s) 397, 648, 651
Sau3AI GATC 4 cut(s) 48, 190, 252, 802
Sau96I GGNCC 4 cut(s) 281, 318, 355, 719
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 3 cut(s) 265, 322, 546
SduI GDGCHC 2 cut(s) 84, 177
SfaNI GCATC 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 3 cut(s) 281, 355, 719
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 3 cut(s) 137, 170, 657
SmoI CTYRAG 3 cut(s) 137, 170, 657
Sse9I AATT 5 cut(s) 327, 344, 562, 633, 738
SsiI CCGC 5 cut(s) 45, 234, 299, 551, 650
SspI AATATT 1 cut(s) 409
SspMI CTAG 4 cut(s) 23, 287, 302, 681
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 263, 320, 544
StyI CCWWGG 2 cut(s) 440, 731
TaiI ACGT 1 cut(s) 338
TaqI TCGA 4 cut(s) 171, 177, 243, 560
TasI AATT 5 cut(s) 327, 344, 562, 633, 738
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 2 cut(s) 203, 595
Tru1I TTAA 3 cut(s) 330, 666, 830
Tru9I TTAA 3 cut(s) 330, 666, 830
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 5 cut(s) 5, 25, 104, 381, 749
TseI GCWGC 2 cut(s) 396, 647
Tsp45I GTSAC 5 cut(s) 5, 25, 104, 381, 749
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 3 cut(s) 281, 355, 719
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 562
XceI RCATGY 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 4 cut(s) 23, 287, 302, 681
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.