Rorug02G0208100

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001435
Physical Location & Seq
Reverse (-)
19513604 .. 19514176
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0208100.1

Sequence Viewer

Length: 573 bp
ATGTCAACGGCGGCGACGGAGCACCTCCCGGAGGACCTTATCATACTGCAAATCCTCACCAGGCTTCCGATCAAATCTCTAATCCGATTCAGCTGCGTCTCAAAGCGCTTGAGTTCCATAATTCTCGACTACGTACTGGGCTCGTGCAATGGCATGGTATGTGTAGCTCTTGATTTTCATGATGGTTATTATACCTGGAACCCATCTACTGCTTTGTTTCTCAAATTGCCAAACCCTAATTTTGCCTCAGAAGGGGTCTTCTCCTTTTACCCAAAAATGCCAGACTTTGACCGATCAAAGACGATTGTAGCTCCCCATTATTGGGGTTTTGGCTATGTTTCGGCCACCGACGACTATAAAGTTGTTGTAGAAGCTCTCTTTGCGGATTCTAAAATGTATGTTGAAGTCTTTTCATCTAGAGCCAACTCTTGGAAGAGGATTGAATCCACTCTAACCATTTCCTCGGTGTATCATTCGTTCACCAAGACCAAGGGGGCTCTTTCGAATGAGACACTCCATTGGCTCCACGCCCCGTGCACCCGAGTGTTACAGACTTGTTATCGCCGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

190

Amino Acids

21.6

Weight (kDa)

8.56

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 43 1.8e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 429
AciI CCGC 3 cut(s) 11, 383, 565
AcoI YGGCCR 1 cut(s) 342
AfaI GTAC 1 cut(s) 135
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 5 cut(s) 31, 252, 321, 322, 429
AgsI TTSAA 2 cut(s) 404, 443
AjnI CCWGG 2 cut(s) 59, 194
AleI CACNNNNGTG 1 cut(s) 542
AluBI AGCT 4 cut(s) 93, 167, 311, 374
AluI AGCT 4 cut(s) 93, 167, 311, 374
Alw21I GWGCWC 2 cut(s) 24, 539
Alw26I GTCTC 2 cut(s) 103, 503
Alw44I GTGCAC 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 540
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 342
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 49, 472
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 2 cut(s) 143, 499
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 24, 539
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 176, 211
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 61, 196
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 103, 503
BfaI CTAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 3 cut(s) 12, 94, 565
BlsI GCNGC 3 cut(s) 13, 95, 566
Bme1390I CCNGG 3 cut(s) 29, 61, 196
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 200, 524
BmrFI CCNGG 3 cut(s) 29, 61, 196
BmrI ACTGGG 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 250
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 462, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 252, 321, 322, 429
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 2 cut(s) 61, 196
BseDI CCNNGG 2 cut(s) 462, 489
BseLI CCNNNNNNNGG 5 cut(s) 31, 252, 321, 322, 429
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 24, 539
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 31, 252, 321, 322, 429
BsmAI GTCTC 2 cut(s) 103, 503
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 4 cut(s) 24, 143, 499, 539
Bsp143I GATC 2 cut(s) 69, 293
BspACI CCGC 3 cut(s) 11, 383, 565
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 200, 524
BspT104I TTCGAA 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 462, 489
BssMI GATC 2 cut(s) 69, 293
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 61, 196
Bst6I CTCTTC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 503
BstDEI CTNAG 1 cut(s) 247
BstENI CCTNNNNNAGG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 72, 296
BstMAI GTCTC 2 cut(s) 103, 503
BstMBI GATC 2 cut(s) 69, 293
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 2 cut(s) 61, 196
BstSCI CCNGG 3 cut(s) 27, 59, 194
BstSLI GKGCMC 1 cut(s) 539
BstSNI TACGTA 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 344
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 154, 179
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 247
DpnI GATC 2 cut(s) 71, 295
DpnII GATC 2 cut(s) 69, 293
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 143, 499
Eco47I GGWCC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 540
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 59, 194
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 143, 499
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 157, 182
FaiI YATR 9 cut(s) 44, 119, 155, 160, 180, 192, 336, 357, 399
FatI CATG 2 cut(s) 153, 178
Fnu4HI GCNGC 3 cut(s) 12, 94, 565
FriOI GRGCYC 2 cut(s) 143, 499
Fsp4HI GCNGC 3 cut(s) 12, 94, 565
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 12, 94, 565
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 157, 182
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 87, 386, 443
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 49, 472
Hpy166II GTNNAC 3 cut(s) 6, 480, 537
Hpy188I TCNGA 3 cut(s) 69, 86, 250
Hpy188III TCNNGA 4 cut(s) 125, 170, 179, 417
Hpy8I GTNNAC 3 cut(s) 6, 480, 537
Hpy99I CGWCG 2 cut(s) 19, 353
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 49, 147, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 157, 182
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 69, 293
LmnI GCTCC 3 cut(s) 19, 316, 528
LpnPI CCDG 7 cut(s) 42, 46, 73, 122, 181, 208, 294
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 71, 295
MboI GATC 2 cut(s) 69, 293
MboII GAAGA 2 cut(s) 250, 445
MhlI GDGCHC 4 cut(s) 24, 143, 499, 539
MluCI AATT 3 cut(s) 120, 224, 238
MnlI CCTC 6 cut(s) 25, 35, 65, 256, 429, 472
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 29, 61, 196
MvaI CCWGG 2 cut(s) 61, 196
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 29
NdeII GATC 2 cut(s) 69, 293
NlaIII CATG 2 cut(s) 157, 182
NlaIV GGNNCC 2 cut(s) 200, 524
NspV TTCGAA 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 542
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 3 cut(s) 87, 386, 443
PflMI CCANNNNNTGG 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 3 cut(s) 13, 95, 566
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 59, 194
PspGI CCWGG 2 cut(s) 59, 194
PspN4I GGNNCC 2 cut(s) 200, 524
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 461, 493
PvuII CAGCTG 1 cut(s) 93
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 542
SatI GCNGC 3 cut(s) 12, 94, 565
Sau3AI GATC 2 cut(s) 69, 293
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 29, 61, 196
SduI GDGCHC 4 cut(s) 24, 143, 499, 539
SetI ASST 8 cut(s) 27, 39, 95, 135, 169, 197, 313, 376
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 3 cut(s) 120, 224, 238
SsiI CCGC 3 cut(s) 11, 383, 565
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 27, 59, 194
StyI CCWWGG 1 cut(s) 489
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 126, 503
TaqII GACCGA 1 cut(s) 306
TasI AATT 3 cut(s) 120, 224, 238
TauI GCSGC 2 cut(s) 14, 567
TfiI GAWTC 3 cut(s) 87, 386, 443
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 167, 402
TspGWI ACGGA 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 429
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 34
XagI CCTNNNNNAGG 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 416
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.