Rmu_sc0004942.1_g000012

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004942.1
OG0001435
Physical Location & Seq
Forward (+)
38468 .. 39937
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004942.1_g000012.1.cds

Sequence Viewer

Length: 1470 bp
atggcgagaaagcgaaagctcgattccaactccaccgaggcctccgagccggctaagaagcagcagcagcagcagcagcagccggaggtcgtcgaggagccgaagccccagaacgaaccggccgaggaggtagaagaagaggtcgaggaggaagaagaggctgaggaggaagaggaggaggaggaggagtacgaggaggaagaagaggttgaggaagagcctggcgttgagtacatgcagaacaccgagactataaccgtgacgacaactaccacgacggcggtggatccagttcaacccgtggccggcggcgaggagaacggcggcggtgaggatgatgaggacgagccaattcaggatcttctggagccgtttagtaaggaccagctggtgagtctgctgagggaggcggcggagagccaccgtgatgtatcggatcggatccggaaggttgcggatgaagaaccgatccaccggaagatctttgtccacgggcttgggtgggacaccaccgccgaaaccctaacctccgtgtttacggcgtacggtgagattgaggattgcaaggctgtgtgtgataaggtctctggaaagtccaagggttatggtttcattctcttcaagacgcggtccggggctcggaaagctttgaagcagccgcagaagaagatcggaaatcggatgactgcctgccagctggcctcgttgggcccggcggcgacgcctactgcccctggccctgctgcggtggccccggcccagccggtttcggagtacacattgaggaagatctatgtgagcaatgttggggcagatttagatcctcagaagctgcttatgttcttttcgaggtttggagaaattgaagaagggccgttggggttggataaggccactggaaggccgaaggggttttgcttgtttgtgtacaagtcggcagagagtgcaaagagggctttggaggagccgcacaagaattttgatgggcacattttgcactgccagaaggcaattgacggtcccaagccggttaagtctcagcatgggaaccagcaccaccacaataggaataagaattccggttttggtggcggagcaccggcgggacctggccatatgatggccccaggaggtgctggaattgggtttaaccagggggctgcatcaacccaggcgttgaacccggcgcttggacaggccctggctttgcttgctacacagggggctggcctaaatctttttgggactttgggagctcaaggtgtgaaccctggtgtgcctggtggagcacatggaatacaaagtgggtatggcaatcagccaagtataagtcctggaatgatgggaacctatggaaatcaaggggcattgcagggaggctaccccaacccacagttgggccaaggtggatcaggaagagggccacatggtcttgggcaatatggtggtgctccatacacggggcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

489

Amino Acids

52.05

Weight (kDa)

4.92

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1120
AccII CGCG 1 cut(s) 628
AccIII TCCGGA 1 cut(s) 444
AclWI GGATC 9 cut(s) 281, 294, 366, 436, 444, 449, 463, 815, 1417
AcoI YGGCCR 3 cut(s) 120, 303, 1111
AcsI RAATTY 2 cut(s) 976, 1075
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 5 cut(s) 191, 233, 545, 776, 929
AfiI CCNNNNNNNGG 9 cut(s) 305, 639, 745, 900, 1120, 1190, 1396, 1397, 1460
AgsI TTSAA 5 cut(s) 296, 622, 652, 866, 1180
AluBI AGCT 6 cut(s) 19, 388, 647, 697, 832, 1256
AluI AGCT 6 cut(s) 19, 388, 647, 697, 832, 1256
Alw21I GWGCWC 4 cut(s) 1099, 1258, 1291, 1453
Alw26I GTCTC 3 cut(s) 242, 589, 1041
AlwI GGATC 9 cut(s) 281, 294, 366, 436, 444, 449, 463, 815, 1417
AlwNI CAGNNNCTG 2 cut(s) 832, 1201
Aor13HI TCCGGA 1 cut(s) 444
ApaI GGGCCC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 976, 1075
AspLEI GCGC 1 cut(s) 1189
AsuC2I CCSGG 4 cut(s) 634, 713, 755, 1184
AsuHPI GGTGA 3 cut(s) 341, 403, 560
AvaII GGWCC 4 cut(s) 382, 630, 1019, 1106
BaeGI GKGCMC 3 cut(s) 713, 990, 1467
BalI TGGCCA 1 cut(s) 1113
BamHI GGATCC 2 cut(s) 286, 441
BanII GRGCYC 3 cut(s) 640, 713, 1258
Bbv12I GWGCWC 4 cut(s) 1099, 1258, 1291, 1453
BbvCI CCTCAGC 2 cut(s) 162, 401
BccI CCATC 3 cut(s) 977, 1114, 1336
BceAI ACGGC 5 cut(s) 294, 337, 355, 555, 859
BcnI CCSGG 4 cut(s) 634, 713, 755, 1184
BcoDI GTCTC 3 cut(s) 242, 589, 1041
BfaI CTAG 1 cut(s) 1468
BfoI RGCGCY 1 cut(s) 1190
BglII AGATCT 2 cut(s) 480, 789
Bme18I GGWCC 4 cut(s) 382, 630, 1019, 1106
BmsI GCATC 1 cut(s) 1172
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 2 cut(s) 162, 401
BpuEI CTTGAG 1 cut(s) 1242
BpuMI CCSGG 4 cut(s) 634, 713, 755, 1184
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 722
BsaI GGTCTC 1 cut(s) 589
BsaWI WCCGGW 3 cut(s) 444, 474, 1079
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 9 cut(s) 305, 639, 745, 900, 1120, 1190, 1396, 1397, 1460
Bse118I RCCGGY 6 cut(s) 49, 118, 305, 763, 1027, 1099
Bse1I ACTGG 2 cut(s) 290, 901
Bse3DI GCAATG 2 cut(s) 808, 1367
Bse8I GATNNNNATC 1 cut(s) 819
BseAI TCCGGA 1 cut(s) 444
BseGI GGATG 3 cut(s) 340, 463, 687
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 9 cut(s) 305, 639, 745, 900, 1120, 1190, 1396, 1397, 1460
BseMI GCAATG 2 cut(s) 808, 1367
BseMII CTCAG 4 cut(s) 153, 392, 839, 1052
BseNI ACTGG 2 cut(s) 290, 901
BseSI GKGCMC 3 cut(s) 713, 990, 1467
BseX3I CGGCCG 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 759
Bsh1236I CGCG 1 cut(s) 628
Bsh1285I CGRYCG 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 4 cut(s) 1099, 1258, 1291, 1453
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 4 cut(s) 518, 1005, 1119, 1258
BslI CCNNNNNNNGG 9 cut(s) 305, 639, 745, 900, 1120, 1190, 1396, 1397, 1460
BsmAI GTCTC 3 cut(s) 242, 589, 1041
BsmFI GGGAC 4 cut(s) 518, 1005, 1119, 1258
Bso31I GGTCTC 1 cut(s) 589
Bsp120I GGGCCC 1 cut(s) 709
Bsp1286I GDGCHC 8 cut(s) 640, 713, 990, 1099, 1258, 1291, 1453, 1467
Bsp13I TCCGGA 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 927
BspCNI CTCAG 4 cut(s) 154, 393, 838, 1051
BspEI TCCGGA 1 cut(s) 444
BspFNI CGCG 1 cut(s) 628
BspPI GGATC 9 cut(s) 281, 294, 366, 436, 444, 449, 463, 815, 1417
BspQI GCTCTTC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 2 cut(s) 808, 1367
BsrFI RCCGGY 6 cut(s) 49, 118, 305, 763, 1027, 1099
BsrGI TGTACA 1 cut(s) 927
BsrI ACTGG 2 cut(s) 290, 901
BssAI RCCGGY 6 cut(s) 49, 118, 305, 763, 1027, 1099
BssNI GRCGYC 1 cut(s) 722
BssT1I CCWWGG 2 cut(s) 597, 1402
Bst4CI ACNGT 5 cut(s) 259, 425, 548, 1019, 1395
Bst6I CTCTTC 7 cut(s) 132, 150, 165, 198, 210, 623, 1411
BstACI GRCGYC 1 cut(s) 722
BstAPI GCANNNNNTGC 2 cut(s) 944, 994
BstAUI TGTACA 1 cut(s) 927
BstC8I GCNNGC 7 cut(s) 51, 307, 691, 695, 699, 1212, 1228
BstDEI CTNAG 5 cut(s) 54, 162, 401, 825, 1038
BstDSI CCRYGG 2 cut(s) 300, 490
BstF5I GGATG 3 cut(s) 340, 463, 687
BstFNI CGCG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 1190
BstHHI GCGC 1 cut(s) 1189
BstMAI GTCTC 3 cut(s) 242, 589, 1041
BstMCI CGRYCG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 238
BstSLI GKGCMC 3 cut(s) 713, 990, 1467
BstUI CGCG 1 cut(s) 628
BstX2I RGATCY 6 cut(s) 286, 358, 441, 480, 789, 820
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 6 cut(s) 286, 358, 441, 480, 789, 820
BstZI CGGCCG 1 cut(s) 120
BtgI CCRYGG 2 cut(s) 300, 490
BtsCI GGATG 3 cut(s) 340, 463, 687
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 2 cut(s) 894, 997
Cac8I GCNNGC 7 cut(s) 51, 307, 691, 695, 699, 1212, 1228
CaiI CAGNNNCTG 2 cut(s) 832, 1201
CfoI GCGC 1 cut(s) 1189
Cfr10I RCCGGY 6 cut(s) 49, 118, 305, 763, 1027, 1099
CpoI CGGWCCG 1 cut(s) 630
CseI GACGC 2 cut(s) 634, 730
Csp6I GTAC 5 cut(s) 190, 232, 544, 775, 928
CspI CGGWCCG 1 cut(s) 630
CviAII CATG 4 cut(s) 235, 1043, 1292, 1427
CviQI GTAC 5 cut(s) 190, 232, 544, 775, 928
DdeI CTNAG 5 cut(s) 54, 162, 401, 825, 1038
EaeI YGGCCR 3 cut(s) 120, 303, 1111
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 7 cut(s) 132, 150, 165, 198, 210, 623, 1411
EarI CTCTTC 7 cut(s) 132, 150, 165, 198, 210, 623, 1411
EciI GGCGGA 2 cut(s) 428, 1107
Ecl136II GAGCTC 1 cut(s) 1256
EclXI CGGCCG 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 597, 1402
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 3 cut(s) 640, 713, 1258
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 4 cut(s) 382, 630, 1019, 1106
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 1256
EcoICRI GAGCTC 1 cut(s) 1256
EcoO109I RGGNCCY 2 cut(s) 1106, 1198
EcoRI GAATTC 1 cut(s) 1075
EcoT14I CCWWGG 2 cut(s) 597, 1402
EcoT38I GRGCYC 3 cut(s) 640, 713, 1258
ErhI CCWWGG 2 cut(s) 597, 1402
FaeI CATG 4 cut(s) 238, 1046, 1295, 1430
FaqI GGGAC 4 cut(s) 518, 1005, 1119, 1258
FatI CATG 4 cut(s) 234, 1042, 1291, 1426
FauI CCCGC 1 cut(s) 1096
FauNDI CATATG 1 cut(s) 1116
FokI GGATG 3 cut(s) 347, 470, 694
FriOI GRGCYC 3 cut(s) 640, 713, 1258
FspBI CTAG 1 cut(s) 1468
GlaI GCGC 1 cut(s) 1188
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 1190
HgaI GACGC 2 cut(s) 634, 730
HhaI GCGC 1 cut(s) 1189
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 4 cut(s) 238, 1046, 1295, 1430
Hin6I GCGC 1 cut(s) 1187
HinP1I GCGC 1 cut(s) 1187
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 2 cut(s) 23, 394
HphI GGTGA 3 cut(s) 341, 403, 560
Hpy166II GTNNAC 5 cut(s) 490, 537, 777, 928, 1267
Hpy188I TCNGA 8 cut(s) 46, 436, 441, 642, 674, 681, 772, 828
Hpy188III TCNNGA 6 cut(s) 356, 365, 445, 588, 622, 1413
Hpy8I GTNNAC 5 cut(s) 490, 537, 777, 928, 1267
Hpy99I CGWCG 3 cut(s) 95, 280, 724
HpyAV CCTTC 5 cut(s) 442, 863, 894, 901, 1000
HpyCH4III ACNGT 5 cut(s) 259, 425, 548, 1019, 1395
HpyCH4V TGCA 6 cut(s) 238, 564, 947, 997, 1163, 1372
HpyF3I CTNAG 5 cut(s) 54, 162, 401, 825, 1038
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 4 cut(s) 238, 1046, 1295, 1430
HspAI GCGC 1 cut(s) 1187
Kpn2I TCCGGA 1 cut(s) 444
KroI GCCGGC 2 cut(s) 49, 305
KroNI GCCGGC 2 cut(s) 51, 307
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 7 cut(s) 97, 367, 964, 1094, 1253, 1286, 1456
LweI GCATC 1 cut(s) 1172
MaeI CTAG 1 cut(s) 1468
MaeIII GTNAC 1 cut(s) 259
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 6 cut(s) 286, 358, 441, 480, 789, 820
MhlI GDGCHC 8 cut(s) 640, 713, 990, 1099, 1258, 1291, 1453, 1467
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 6 cut(s) 351, 861, 976, 1011, 1075, 1140
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 51, 864
Mox20I TGGCCA 1 cut(s) 1113
MroI TCCGGA 1 cut(s) 444
MroNI GCCGGC 2 cut(s) 49, 305
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 2 cut(s) 1032, 1149
MslI CAYNNNNRTG 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 388, 697
MunI CAATTG 1 cut(s) 1011
MvnI CGCG 1 cut(s) 628
NaeI GCCGGC 2 cut(s) 51, 307
NciI CCSGG 4 cut(s) 634, 713, 755, 1184
NdeI CATATG 1 cut(s) 1116
NgoMIV GCCGGC 2 cut(s) 49, 305
NlaIII CATG 4 cut(s) 238, 1046, 1295, 1430
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 238
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 2 cut(s) 51, 307
PfeI GAWTC 1 cut(s) 23
Pfl23II CGTACG 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 628
PflMI CCANNNNNTGG 1 cut(s) 1120
PfoI TCCNGGA 1 cut(s) 1333
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 1258
Psp5II RGGWCCY 1 cut(s) 1106
PspFI CCCAGC 1 cut(s) 759
PspLI CGTACG 1 cut(s) 543
PspOMI GGGCCC 1 cut(s) 709
PspPPI RGGWCCY 1 cut(s) 1106
PstNI CAGNNNCTG 2 cut(s) 832, 1201
PsuI RGATCY 6 cut(s) 286, 358, 441, 480, 789, 820
PsyI GACNNNGTC 1 cut(s) 628
PvuII CAGCTG 2 cut(s) 388, 697
RsaI GTAC 5 cut(s) 191, 233, 545, 776, 929
RsaNI GTAC 5 cut(s) 190, 232, 544, 775, 928
RseI CAYNNNNRTG 1 cut(s) 426
Rsr2I CGGWCCG 1 cut(s) 630
RsrII CGGWCCG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 1258
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 1032, 1149
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 8 cut(s) 640, 713, 990, 1099, 1258, 1291, 1453, 1467
SfaNI GCATC 1 cut(s) 1172
SgrAI CRCCGGYG 1 cut(s) 1099
SinI GGWCC 4 cut(s) 382, 630, 1019, 1106
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 1257
SmoI CTYRAG 1 cut(s) 1257
Sse9I AATT 6 cut(s) 351, 861, 976, 1011, 1075, 1140
SseBI AGGCCT 1 cut(s) 41
SspMI CTAG 1 cut(s) 1468
SstI GAGCTC 1 cut(s) 1258
StuI AGGCCT 1 cut(s) 41
StyI CCWWGG 2 cut(s) 597, 1402
TaaI ACNGT 5 cut(s) 259, 425, 548, 1019, 1395
TaqI TCGA 4 cut(s) 21, 93, 144, 848
TasI AATT 6 cut(s) 351, 861, 976, 1011, 1075, 1140
TatI WGTACW 3 cut(s) 231, 774, 927
TauI GCSGC 6 cut(s) 312, 327, 413, 661, 719, 970
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 1032, 1149
Tru9I TTAA 2 cut(s) 1032, 1149
TscAI CASTG 2 cut(s) 901, 1004
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 474, 601
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 2 cut(s) 901, 1004
Tth111I GACNNNGTC 1 cut(s) 628
Van91I CCANNNNNTGG 1 cut(s) 1120
VpaK11BI GGWCC 4 cut(s) 382, 630, 1019, 1106
XapI RAATTY 2 cut(s) 976, 1075
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 2 cut(s) 280, 1393
XspI CTAG 1 cut(s) 1468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.