FvH4_2g11380

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001435
Physical Location & Seq
Reverse (-)
9926391 .. 9926783
393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11380.t1

Sequence Viewer

Length: 393 bp
ATGATAACCTCCTCCGCCTCCGCCGACTCCTCCCTCCGCAAACGTATCCGCCGACGCCGACGTCGACGTCTCCCACCACAAAATCTTCGTCCACGCGGCCTCGGTTGGGACACCACTCGAGAAGTCCTCGTCTTCGCCTTCGAACCTTTCGGCGAGGTCGAGGACTCCAATCTCATCATGGACAAACTCACCGAAAAAGCTAAAGGCTACGGCTTCGTCCTCTTCAAGACCTGCCGTGCTGCTCTCAAAGCCCTAAGGGAGCCCAAGAAGACCATCAGCAGCCGCTGCGCCTCCTGCCAGCTCGCCTCCGTCGGTCCCGGCACCAACACTACACCAACGCGGCGGCGCCGTCCTCTGAATCATGGTCCGGTAGAAAGATTCATGGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006366 GO:0006396 GO:0006397 GO:0006401 GO:0006417 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009299 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032268 GO:0032270 GO:0032501 GO:0032774 GO:0032991 GO:0033043 GO:0033044 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042752 GO:0042789 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043565 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0046700 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097167 GO:0097659 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902680 GO:1903311 GO:1903506 GO:1903508 GO:1904353 GO:1904355 GO:1905661 GO:1905663 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

11.32

Isoelectric Point (pI)

71.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 95 9.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 60, 66
AatII GACGTC 2 cut(s) 64, 70
Acc36I ACCTGC 1 cut(s) 239
AccB1I GGYRCC 2 cut(s) 320, 345
AccI GTMKAC 1 cut(s) 64
AccII CGCG 2 cut(s) 96, 340
AciI CCGC 8 cut(s) 15, 21, 37, 49, 96, 283, 340, 343
AcyI GRCGYC 4 cut(s) 55, 61, 67, 346
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 200, 301
AluI AGCT 2 cut(s) 200, 301
Alw26I GTCTC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 239, 279, 285
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AspLEI GCGC 2 cut(s) 290, 348
AspS9I GGNCC 2 cut(s) 314, 365
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 2 cut(s) 314, 365
AxyI CCTNAGG 1 cut(s) 254
BanI GGYRCC 2 cut(s) 320, 345
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 124, 275
BbvI GCAGC 3 cut(s) 226, 272, 291
BccI CCATC 1 cut(s) 281
BceAI ACGGC 3 cut(s) 219, 226, 333
BciVI GTATCC 1 cut(s) 56
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 239
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 7 cut(s) 97, 240, 280, 283, 286, 341, 344
BlsI GCNGC 7 cut(s) 98, 241, 281, 284, 287, 342, 345
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 314, 365
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 314, 365
BmiI GGNNCC 4 cut(s) 261, 316, 322, 347
BmrFI CCNGG 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 124, 275
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 318
BsaHI GRCGYC 4 cut(s) 55, 61, 67, 346
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 226, 272, 291
Bsh1236I CGCG 2 cut(s) 96, 340
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 2 cut(s) 320, 345
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 318, 368
BslFI GGGAC 2 cut(s) 122, 300
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 122, 300
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 264
BspACI CCGC 8 cut(s) 15, 21, 37, 49, 96, 283, 340, 343
BspANI GGCC 1 cut(s) 99
BspFNI CGCG 2 cut(s) 96, 340
BspLI GGNNCC 4 cut(s) 261, 316, 322, 347
BspMI ACCTGC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 2 cut(s) 320, 345
BssECI CCNNGG 1 cut(s) 100
BssNI GRCGYC 4 cut(s) 55, 61, 67, 346
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 4 cut(s) 55, 61, 67, 346
BstAPI GCANNNNNTGC 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 299, 303
BstDEI CTNAG 1 cut(s) 254
BstFNI CGCG 2 cut(s) 96, 340
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 290, 348
BstMAI GTCTC 1 cut(s) 74
BstMWI GCNNNNNNNGC 3 cut(s) 248, 285, 294
BstSCI CCNGG 1 cut(s) 316
BstUI CGCG 2 cut(s) 96, 340
BstV1I GCAGC 3 cut(s) 226, 272, 291
BstV2I GAAGAC 2 cut(s) 124, 275
Bsu36I CCTNAGG 1 cut(s) 254
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 99
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 299, 303
CaiI CAGNNNCTG 1 cut(s) 285
CfoI GCGC 2 cut(s) 290, 348
Cfr13I GGNCC 2 cut(s) 314, 365
CseI GACGC 1 cut(s) 63
CviAII CATG 3 cut(s) 178, 362, 382
CviJI RGCY 8 cut(s) 99, 200, 207, 213, 251, 262, 282, 301
CviKI_1 RGCY 8 cut(s) 99, 200, 207, 213, 251, 262, 282, 301
DdeI CTNAG 1 cut(s) 254
DinI GGCGCC 1 cut(s) 347
DrdI GACNNNNNNGTC 2 cut(s) 60, 66
DseDI GACNNNNNNGTC 2 cut(s) 60, 66
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 4, 10, 38
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 314, 365
Eco81I CCTNAGG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 264
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 3 cut(s) 181, 365, 385
FaiI YATR 3 cut(s) 179, 363, 383
FaqI GGGAC 2 cut(s) 122, 300
FatI CATG 3 cut(s) 177, 361, 381
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 7 cut(s) 97, 240, 280, 283, 286, 341, 344
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 7 cut(s) 97, 240, 280, 283, 286, 341, 344
GlaI GCGC 2 cut(s) 289, 347
GluI GCNGC 7 cut(s) 97, 240, 280, 283, 286, 341, 344
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 318, 368
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 290, 348
Hin1I GRCGYC 4 cut(s) 55, 61, 67, 346
Hin1II CATG 3 cut(s) 181, 365, 385
Hin6I GCGC 2 cut(s) 288, 346
HinP1I GCGC 2 cut(s) 288, 346
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 4 cut(s) 26, 164, 358, 378
HpaII CCGG 2 cut(s) 318, 368
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 65, 92
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 119, 226
Hpy8I GTNNAC 2 cut(s) 65, 92
Hpy99I CGWCG 5 cut(s) 57, 63, 66, 69, 314
HpyAV CCTTC 2 cut(s) 148, 380
HpyCH4IV ACGT 3 cut(s) 43, 61, 67
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 285, 294
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 3 cut(s) 43, 61, 67
Hsp92I GRCGYC 4 cut(s) 55, 61, 67, 346
Hsp92II CATG 3 cut(s) 181, 365, 385
HspAI GCGC 2 cut(s) 288, 346
KasI GGCGCC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 244, 307, 311, 331, 381
Lsp1109I GCAGC 3 cut(s) 226, 272, 291
MaeII ACGT 3 cut(s) 43, 61, 67
MboII GAAGA 4 cut(s) 77, 124, 214, 280
MhlI GDGCHC 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 346
MlyI GAGTC 2 cut(s) 20, 158
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 2 cut(s) 318, 368
MspR9I CCNGG 1 cut(s) 318
MvnI CGCG 2 cut(s) 96, 340
MwoI GCNNNNNNNGC 3 cut(s) 248, 285, 294
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 1 cut(s) 318
NlaIII CATG 3 cut(s) 181, 365, 385
NlaIV GGNNCC 4 cut(s) 261, 316, 322, 347
NspV TTCGAA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 117
PcsI WCGNNNNNNNCGW 3 cut(s) 49, 61, 156
PfeI GAWTC 2 cut(s) 358, 378
PkrI GCNGC 7 cut(s) 98, 241, 281, 284, 287, 342, 345
PleI GAGTC 2 cut(s) 20, 158
PluTI GGCGCC 1 cut(s) 349
PpsI GAGTC 2 cut(s) 20, 158
PspN4I GGNNCC 4 cut(s) 261, 316, 322, 347
PspPI GGNCC 2 cut(s) 314, 365
PstNI CAGNNNCTG 1 cut(s) 285
SalI GTCGAC 1 cut(s) 63
SatI GCNGC 7 cut(s) 97, 240, 280, 283, 286, 341, 344
Sau96I GGNCC 2 cut(s) 314, 365
SchI GAGTC 2 cut(s) 20, 158
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 264
SfoI GGCGCC 1 cut(s) 347
Sfr274I CTCGAG 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 141
SgrDI CGTCGACG 1 cut(s) 63
SinI GGWCC 2 cut(s) 314, 365
SlaI CTCGAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SsiI CCGC 8 cut(s) 15, 21, 37, 49, 96, 283, 340, 343
SspDI GGCGCC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 316
TaiI ACGT 3 cut(s) 46, 64, 70
TaqI TCGA 4 cut(s) 64, 118, 141, 159
TaqII GACCGA 1 cut(s) 302
TauI GCSGC 4 cut(s) 99, 285, 343, 346
TfiI GAWTC 2 cut(s) 358, 378
TseI GCWGC 3 cut(s) 239, 279, 285
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 314, 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 64
ZraI GACGTC 2 cut(s) 62, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.