AT3G56860

Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3'-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001435
Physical Location & Seq
Reverse (-)
21048727 .. 21052320
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56860.6

Sequence Viewer

Length: 1437 bp
ATGACAAAGAAGAGAAAGCTCGAAGGAGAAGAATCTAACGAAGCTGAAGAACCGTCGCAGAAGCTGAAGCAGACGCCGGAGGAGGAGCAGCAGCTTGTAATTAAAAATCAGGATAATCAAGGAGACGTTGAAGAAGTTGAATACGAGGAAGTAGAGGAAGAGCAAGAAGAAGAAGTAGAAGATGATGACGATGAAGATGATGGTGATGAGAATGAGGATCAGACGGATGGGAATCGTATAGAGGCGGCGGCGACGTCTGGATCTGGCAATCAAGAAGATGATGACGATGAACCAATTCAGGATCTGTTGGAACCATTTTCAAAGGAGCAAGTTTTGAGTCTTCTTAAGGAAGCAGCGGAGAAGCATGTTGATGTAGCCAATCGAATTAGGGAAGTAGCTGATGAGGACCCTGTTCATCGGAAGATCTTTGTGCACGGTCTTGGTTGGGATACGAAAACAGAGACGCTTATTGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGCAAGGCTGTGTTTGATAAGATCTCAGGGAAATCTAAAGGTTATGGCTTTATTCTGTACAAGTCTCGTTCAGGTGCTCGCAACGCACTCAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGCCAATTGGCTTCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTTTCAGCGCCTGCTCAGCATTCGAACTCGGAGCATACTCAGAAAAAGATTTATGTTAGTAATGTCGGAGCAGAGCTTGATCCACAGAAGTTGCTGATGTTTTTCTCAAAGTTTGGAGAAATTGAAGAAGGTCCTTTGGGTCTTGATAAGTATACTGGGAGACCTAAAGGTTTCTGTCTCTTTGTTTATAAGTCGTCTGAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGCCATATCTTGCATTGCCAGAAAGCTATCGATGGTCCCAAACCGGGCAAGCAGCAGCAGCATCACCATAACCCACACGCCTATAACAATCCTCGTTACCAAAGGAATGATAACAATGGTTATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGGATGGGTGGTCCAACGGCACAGGTGATAAACCCGGCCATTGGACAGGCCTTGACAGCTTTATTGGCATCTCAGGGAGCTGGTTTGGCTTTTAATCCGGCAATTGGACAGGCTTTGTTGGGTTCCTTGGGGACAGCTGCTGGTGTAAACCCAGGGAATGGAGTTGGAATGCCAACTGGTTACGGTACTCAAGCTATGGCACCGGGGACAATGCCTGGGTACGGTACACAACCTGGGTTGCAAGGCGGTTATCAGACTCCGCAACCTGGTCAAGGCGGTACAAGTAGAGGGCAACATGGTGTCGGGCCATACGGTACTCCTTACATGGGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

478

Amino Acids

51.44

Weight (kDa)

5.05

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 142 - 205 1.1e-12 RNA recognition motif
RRM_1 PF00076 247 - 315 5.7e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AatII GACGTC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 1300
AccB7I CCANNNNNTGG 1 cut(s) 1259
AccI GTMKAC 1 cut(s) 842
AciI CCGC 7 cut(s) 245, 248, 356, 1061, 1347, 1361, 1377
AclWI GGATC 4 cut(s) 225, 268, 309, 764
AcoI YGGCCR 1 cut(s) 1137
AcuI CTGAAG 2 cut(s) 66, 86
AcyI GRCGYC 2 cut(s) 74, 254
AfaI GTAC 7 cut(s) 488, 563, 1288, 1322, 1327, 1381, 1417
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 6 cut(s) 131, 140, 321, 473, 815, 932
AjnI CCWGG 5 cut(s) 1063, 1252, 1315, 1333, 1366
Alw21I GWGCWC 3 cut(s) 435, 583, 673
Alw26I GTCTC 5 cut(s) 117, 455, 573, 844, 872
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 4 cut(s) 225, 268, 309, 764
AlwNI CAGNNNCTG 4 cut(s) 64, 304, 701, 1241
AoxI GGCC 4 cut(s) 934, 1137, 1149, 1406
ApaLI GTGCAC 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 2 cut(s) 700, 896
AspS9I GGNCC 7 cut(s) 406, 653, 821, 968, 1058, 1112, 1406
AsuC2I CCSGG 3 cut(s) 978, 1136, 1305
AsuHPI GGTGA 3 cut(s) 215, 989, 1138
AsuII TTCGAA 1 cut(s) 713
AvaII GGWCC 6 cut(s) 406, 653, 821, 968, 1058, 1112
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 1300
BanII GRGCYC 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 3 cut(s) 435, 583, 673
BccI CCATC 4 cut(s) 194, 221, 959, 1099
BceAI ACGGC 2 cut(s) 645, 1134
BciT130I CCWGG 5 cut(s) 1065, 1254, 1317, 1335, 1368
BciVI GTATCC 1 cut(s) 442
BcnI CCSGG 3 cut(s) 978, 1136, 1305
BcoDI GTCTC 5 cut(s) 117, 455, 573, 844, 872
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 2 cut(s) 701, 897
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 442
BglI GCCNNNNNGGC 1 cut(s) 902
BglII AGATCT 2 cut(s) 423, 525
BlpI GCTNAGC 1 cut(s) 705
Bme1390I CCNGG 8 cut(s) 978, 1065, 1136, 1254, 1305, 1317, 1335, 1368
Bme18I GGWCC 6 cut(s) 406, 653, 821, 968, 1058, 1112
BmgT120I GGNCC 7 cut(s) 406, 653, 821, 968, 1058, 1112, 1406
BmiI GGNNCC 6 cut(s) 312, 408, 915, 970, 1225, 1302
BmrFI CCNGG 8 cut(s) 978, 1065, 1136, 1254, 1305, 1317, 1335, 1368
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 2 cut(s) 1003, 1178
BmuI ACTGGG 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 1086
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 578, 1275
BpuMI CCSGG 3 cut(s) 978, 1136, 1305
Bsa29I ATCGAT 1 cut(s) 963
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 74, 254
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 6 cut(s) 1227, 1252, 1253, 1304, 1316, 1334
Bse1I ACTGG 2 cut(s) 850, 1282
Bse3DI GCAATG 1 cut(s) 946
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 5 cut(s) 1065, 1254, 1317, 1335, 1368
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 6 cut(s) 1227, 1252, 1253, 1304, 1316, 1334
BseGI GGATG 2 cut(s) 232, 1110
BseJI GATNNNNATC 1 cut(s) 231
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 5 cut(s) 543, 617, 719, 743, 1187
BseNI ACTGG 2 cut(s) 850, 1282
BseRI GAGGAG 3 cut(s) 95, 98, 926
BseSI GKGCMC 1 cut(s) 435
BseYI CCCAGC 2 cut(s) 1096, 1100
BshFI GGCC 4 cut(s) 936, 1139, 1151, 1408
BshNI GGYRCC 1 cut(s) 1300
BshVI ATCGAT 1 cut(s) 963
BsiHKAI GWGCWC 3 cut(s) 435, 583, 673
BsiSI CCGG 5 cut(s) 77, 977, 1136, 1199, 1304
BslFI GGGAC 3 cut(s) 954, 1246, 1321
BsmAI GTCTC 5 cut(s) 117, 455, 573, 844, 872
BsmBI CGTCTC 2 cut(s) 117, 455
BsmFI GGGAC 3 cut(s) 954, 1246, 1321
BsmI GAATGC 2 cut(s) 709, 1275
BsnI GGCC 4 cut(s) 936, 1139, 1151, 1408
Bso31I GGTCTC 1 cut(s) 844
Bsp119I TTCGAA 1 cut(s) 713
Bsp1286I GDGCHC 3 cut(s) 435, 583, 673
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 7 cut(s) 245, 248, 356, 1061, 1347, 1361, 1377
BspANI GGCC 4 cut(s) 936, 1139, 1151, 1408
BspCNI CTCAG 5 cut(s) 542, 616, 718, 742, 1186
BspDI ATCGAT 1 cut(s) 963
BspLI GGNNCC 6 cut(s) 312, 408, 915, 970, 1225, 1302
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 4 cut(s) 225, 268, 309, 764
BspQI GCTCTTC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 1300
BspTI CTTAAG 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 844
BsrDI GCAATG 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 850, 1282
BssECI CCNNGG 6 cut(s) 1227, 1252, 1253, 1304, 1316, 1334
BssMI GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
BssNAI GTATAC 1 cut(s) 843
BssNI GRCGYC 2 cut(s) 74, 254
BssT1I CCWWGG 1 cut(s) 1227
Bst1107I GTATAC 1 cut(s) 843
Bst2UI CCWGG 5 cut(s) 1065, 1254, 1317, 1335, 1368
Bst4CI ACNGT 5 cut(s) 54, 437, 1286, 1325, 1415
Bst6I CTCTTC 2 cut(s) 5, 153
BstACI GRCGYC 2 cut(s) 74, 254
BstAFI CTTAAG 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 583, 634, 702, 983
BstDEI CTNAG 5 cut(s) 529, 603, 705, 729, 1173
BstEII GGTNACC 1 cut(s) 1091
BstENI CCTNNNNNAGG 1 cut(s) 1371
BstF5I GGATG 2 cut(s) 232, 1110
BstH2I RGCGCY 2 cut(s) 701, 897
BstHHI GCGC 2 cut(s) 700, 896
BstKTI GATC 7 cut(s) 220, 263, 304, 426, 498, 528, 772
BstMAI GTCTC 5 cut(s) 117, 455, 573, 844, 872
BstMBI GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
BstNI CCWGG 5 cut(s) 1065, 1254, 1317, 1335, 1368
BstNSI RCATGY 2 cut(s) 368, 636
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 8 cut(s) 976, 1063, 1134, 1252, 1303, 1315, 1333, 1366
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 4 cut(s) 260, 301, 423, 525
BstYI RGATCY 4 cut(s) 260, 301, 423, 525
BstZ17I GTATAC 1 cut(s) 843
Bsu15I ATCGAT 1 cut(s) 963
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 4 cut(s) 936, 1139, 1151, 1408
BsuTUI ATCGAT 1 cut(s) 963
BtsCI GGATG 2 cut(s) 232, 1110
Cac8I GCNNGC 4 cut(s) 583, 634, 702, 983
CaiI CAGNNNCTG 4 cut(s) 64, 304, 701, 1241
CfoI GCGC 2 cut(s) 700, 896
Cfr13I GGNCC 7 cut(s) 406, 653, 821, 968, 1058, 1112, 1406
ClaI ATCGAT 1 cut(s) 963
CseI GACGC 2 cut(s) 82, 472
CsiI ACCWGGT 1 cut(s) 1366
Csp6I GTAC 7 cut(s) 487, 562, 1287, 1321, 1326, 1380, 1416
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 6 cut(s) 365, 633, 1073, 1084, 1397, 1426
CviQI GTAC 7 cut(s) 487, 562, 1287, 1321, 1326, 1380, 1416
DdeI CTNAG 5 cut(s) 529, 603, 705, 729, 1173
DpnI GATC 7 cut(s) 219, 262, 303, 425, 497, 527, 771
DpnII GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 2 cut(s) 5, 153
EarI CTCTTC 2 cut(s) 5, 153
EciI GGCGGA 1 cut(s) 1050
Ecl136II GAGCTC 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 1227
Eco147I AGGCCT 1 cut(s) 1151
Eco24I GRGCYC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 844
Eco47I GGWCC 6 cut(s) 406, 653, 821, 968, 1058, 1112
Eco53kI GAGCTC 1 cut(s) 671
Eco57I CTGAAG 2 cut(s) 66, 86
Eco91I GGTNACC 1 cut(s) 1091
EcoICRI GAGCTC 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 1371
EcoO109I RGGNCCY 3 cut(s) 406, 653, 821
EcoO65I GGTNACC 1 cut(s) 1091
EcoRII CCWGG 5 cut(s) 1063, 1252, 1315, 1333, 1366
EcoT14I CCWWGG 1 cut(s) 1227
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 1227
Esp3I CGTCTC 2 cut(s) 117, 455
FaeI CATG 6 cut(s) 368, 636, 1076, 1087, 1400, 1429
FaqI GGGAC 3 cut(s) 954, 1246, 1321
FatI CATG 6 cut(s) 364, 632, 1072, 1083, 1396, 1425
FblI GTMKAC 1 cut(s) 842
FokI GGATG 2 cut(s) 239, 1117
FriOI GRGCYC 1 cut(s) 673
GlaI GCGC 2 cut(s) 699, 895
GsaI CCCAGC 2 cut(s) 1100, 1104
GsuI CTGGAG 1 cut(s) 1086
HaeII RGCGCY 2 cut(s) 701, 897
HaeIII GGCC 4 cut(s) 936, 1139, 1151, 1408
HapII CCGG 5 cut(s) 77, 977, 1136, 1199, 1304
HgaI GACGC 2 cut(s) 82, 472
HhaI GCGC 2 cut(s) 700, 896
Hin1I GRCGYC 2 cut(s) 74, 254
Hin1II CATG 6 cut(s) 368, 636, 1076, 1087, 1400, 1429
Hin6I GCGC 2 cut(s) 698, 894
HinP1I GCGC 2 cut(s) 698, 894
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 4 cut(s) 32, 232, 337, 1357
HpaII CCGG 5 cut(s) 77, 977, 1136, 1199, 1304
HphI GGTGA 3 cut(s) 215, 989, 1138
Hpy166II GTNNAC 4 cut(s) 433, 843, 1249, 1328
Hpy188I TCNGA 8 cut(s) 222, 420, 606, 721, 732, 758, 889, 1356
Hpy188III TCNNGA 5 cut(s) 110, 258, 272, 299, 833
Hpy8I GTNNAC 4 cut(s) 433, 843, 1249, 1328
Hpy99I CGWCG 2 cut(s) 58, 256
HpyAV CCTTC 3 cut(s) 17, 812, 926
HpyCH4III ACNGT 5 cut(s) 54, 437, 1286, 1325, 1415
HpyCH4IV ACGT 2 cut(s) 126, 254
HpyCH4V TGCA 5 cut(s) 433, 507, 686, 946, 1342
HpyF3I CTNAG 5 cut(s) 529, 603, 705, 729, 1173
HpySE526I ACGT 2 cut(s) 126, 254
Hsp92I GRCGYC 2 cut(s) 74, 254
Hsp92II CATG 6 cut(s) 368, 636, 1076, 1087, 1400, 1429
HspAI GCGC 2 cut(s) 698, 894
Kzo9I GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 8 cut(s) 85, 325, 668, 676, 721, 758, 913, 1178
LweI GCATC 2 cut(s) 1003, 1178
MabI ACCWGGT 1 cut(s) 1366
MaeII ACGT 2 cut(s) 126, 254
MaeIII GTNAC 4 cut(s) 1028, 1091, 1280, 1430
MalI GATC 7 cut(s) 219, 262, 303, 425, 497, 527, 771
MboI GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
MfeI CAATTG 2 cut(s) 638, 1203
MflI RGATCY 4 cut(s) 260, 301, 423, 525
MhlI GDGCHC 3 cut(s) 435, 583, 673
MluCI AATT 6 cut(s) 99, 294, 384, 638, 810, 1203
MlyI GAGTC 2 cut(s) 346, 1351
MmeI TCCRAC 4 cut(s) 288, 736, 1139, 1246
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 4 cut(s) 102, 345, 480, 1194
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 4 cut(s) 356, 689, 1100, 1238
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 5 cut(s) 77, 977, 1136, 1199, 1304
MspR9I CCNGG 8 cut(s) 978, 1065, 1136, 1254, 1305, 1317, 1335, 1368
MunI CAATTG 2 cut(s) 638, 1203
Mva1269I GAATGC 2 cut(s) 709, 1275
MvaI CCWGG 5 cut(s) 1065, 1254, 1317, 1335, 1368
NciI CCSGG 3 cut(s) 978, 1136, 1305
NdeII GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
NlaIII CATG 6 cut(s) 368, 636, 1076, 1087, 1400, 1429
NlaIV GGNNCC 6 cut(s) 312, 408, 915, 970, 1225, 1302
NmuCI GTSAC 1 cut(s) 1430
NspI RCATGY 2 cut(s) 368, 636
NspV TTCGAA 1 cut(s) 713
PaeI GCATGC 1 cut(s) 636
PasI CCCWGGG 1 cut(s) 1253
PceI AGGCCT 1 cut(s) 1151
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PctI GAATGC 2 cut(s) 709, 1275
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 32, 232
PflMI CCANNNNNTGG 1 cut(s) 1259
PleI GAGTC 2 cut(s) 345, 1351
PpsI GAGTC 2 cut(s) 345, 1351
PpuMI RGGWCCY 3 cut(s) 406, 653, 821
PsiI TTATAA 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 673
Psp5II RGGWCCY 3 cut(s) 406, 653, 821
Psp6I CCWGG 5 cut(s) 1063, 1252, 1315, 1333, 1366
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 2 cut(s) 1096, 1100
PspGI CCWGG 5 cut(s) 1063, 1252, 1315, 1333, 1366
PspN4I GGNNCC 6 cut(s) 312, 408, 915, 970, 1225, 1302
PspPI GGNCC 7 cut(s) 406, 653, 821, 968, 1058, 1112, 1406
PspPPI RGGWCCY 3 cut(s) 406, 653, 821
PstI CTGCAG 1 cut(s) 688
PstNI CAGNNNCTG 4 cut(s) 64, 304, 701, 1241
PsuI RGATCY 4 cut(s) 260, 301, 423, 525
PvuII CAGCTG 3 cut(s) 689, 1100, 1238
RsaI GTAC 7 cut(s) 488, 563, 1288, 1322, 1327, 1381, 1417
RsaNI GTAC 7 cut(s) 487, 562, 1287, 1321, 1326, 1380, 1416
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 102, 345, 480, 1194
Sau3AI GATC 7 cut(s) 217, 260, 301, 423, 495, 525, 769
Sau96I GGNCC 7 cut(s) 406, 653, 821, 968, 1058, 1112, 1406
SchI GAGTC 2 cut(s) 346, 1351
ScrFI CCNGG 8 cut(s) 978, 1065, 1136, 1254, 1305, 1317, 1335, 1368
SduI GDGCHC 3 cut(s) 435, 583, 673
SexAI ACCWGGT 1 cut(s) 1366
SfaNI GCATC 2 cut(s) 1003, 1178
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 713
SinI GGWCC 6 cut(s) 406, 653, 821, 968, 1058, 1112
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 344, 593, 1290
SmoI CTYRAG 3 cut(s) 344, 593, 1290
SphI GCATGC 1 cut(s) 636
Sse9I AATT 6 cut(s) 99, 294, 384, 638, 810, 1203
SseBI AGGCCT 1 cut(s) 1151
SsiI CCGC 7 cut(s) 245, 248, 356, 1061, 1347, 1361, 1377
SstI GAGCTC 1 cut(s) 673
StuI AGGCCT 1 cut(s) 1151
StyD4I CCNGG 8 cut(s) 976, 1063, 1134, 1252, 1303, 1315, 1333, 1366
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 5 cut(s) 54, 437, 1286, 1325, 1415
TaiI ACGT 2 cut(s) 129, 257
TaqI TCGA 5 cut(s) 21, 382, 498, 713, 963
TasI AATT 6 cut(s) 99, 294, 384, 638, 810, 1203
TatI WGTACW 1 cut(s) 561
TauI GCSGC 2 cut(s) 248, 251
TfiI GAWTC 2 cut(s) 32, 232
Tru1I TTAA 4 cut(s) 102, 345, 480, 1194
Tru9I TTAA 4 cut(s) 102, 345, 480, 1194
TseFI GTSAC 1 cut(s) 1430
Tsp45I GTSAC 1 cut(s) 1430
TspDTI ATGAA 3 cut(s) 207, 303, 404
TspGWI ACGGA 2 cut(s) 239, 504
Van91I CCANNNNNTGG 1 cut(s) 1259
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 431
VpaK11BI GGWCC 6 cut(s) 406, 653, 821, 968, 1058, 1112
XagI CCTNNNNNAGG 1 cut(s) 1371
XceI RCATGY 2 cut(s) 368, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 294
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.