Rmu_sc0004191.1_g000002

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004191.1
OG0001435
Physical Location & Seq
Reverse (-)
8117 .. 8467
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004191.1_g000002.1.cds

Sequence Viewer

Length: 351 bp
atggccccaggaggtgctggaattgggtttaaccagggggctgcatcaacccaggcgttgaacccggcgcttggacaggccctggctttgcttgctacacagggggctggcctaaatctttttgggactttgggagctcaaggtgtgaaccctggtgtgcctggtggagcacatggaatacaaagtgggtatggcaatcagccaagtataagtcctggaatgatgggaacctatggaaatcaaggggcattgcagggaggctaccccaacccacagttgggccaaggtggatcaggaagagggccacatggtcttgggcaatatggtggtgctccatacacggggcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

116

Amino Acids

11.0

Weight (kDa)

8.2

Isoelectric Point (pI)

16.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 298
AfiI CCNNNNNNNGG 4 cut(s) 71, 277, 278, 341
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 7 cut(s) 7, 33, 51, 81, 151, 160, 214
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 3 cut(s) 139, 172, 334
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 5 cut(s) 3, 78, 109, 280, 302
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 4, 79, 280, 302
AsuC2I CCSGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 3 cut(s) 139, 172, 334
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 7 cut(s) 9, 35, 53, 83, 153, 162, 216
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 8 cut(s) 9, 35, 53, 65, 83, 153, 162, 216
BmgT120I GGNCC 4 cut(s) 4, 79, 280, 302
BmiI GGNNCC 2 cut(s) 6, 229
BmrFI CCNGG 8 cut(s) 9, 35, 53, 65, 83, 153, 162, 216
BmsI GCATC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 6 cut(s) 7, 34, 51, 81, 151, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 277, 278, 341
Bse3DI GCAATG 1 cut(s) 248
BseBI CCWGG 7 cut(s) 9, 35, 53, 83, 153, 162, 216
BseDI CCNNGG 6 cut(s) 7, 34, 51, 81, 151, 283
BseLI CCNNNNNNNGG 4 cut(s) 71, 277, 278, 341
BseMI GCAATG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 5 cut(s) 5, 80, 111, 282, 304
BsiHKAI GWGCWC 3 cut(s) 139, 172, 334
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 4 cut(s) 71, 277, 278, 341
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 5 cut(s) 5, 80, 111, 282, 304
Bsp1286I GDGCHC 4 cut(s) 139, 172, 334, 348
Bsp143I GATC 1 cut(s) 290
BspANI GGCC 5 cut(s) 5, 80, 111, 282, 304
BspLI GGNNCC 2 cut(s) 6, 229
BspPI GGATC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 248
BssECI CCNNGG 6 cut(s) 7, 34, 51, 81, 151, 283
BssMI GATC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 7 cut(s) 9, 35, 53, 83, 153, 162, 216
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 93, 109
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 7 cut(s) 9, 35, 53, 83, 153, 162, 216
BstSCI CCNGG 8 cut(s) 7, 33, 51, 63, 81, 151, 160, 214
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 5 cut(s) 5, 80, 111, 282, 304
Cac8I GCNNGC 2 cut(s) 93, 109
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 4, 79, 280, 302
CviAII CATG 2 cut(s) 173, 308
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 7 cut(s) 7, 33, 51, 81, 151, 160, 214
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 176, 311
FaiI YATR 7 cut(s) 174, 192, 209, 234, 309, 324, 337
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 172, 307
Fnu4HI GCNGC 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 349
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 5, 80, 111, 282, 304
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 176, 311
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 44, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 176, 311
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 290
LmnI GCTCC 3 cut(s) 134, 167, 337
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 349
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 1 cut(s) 309
MhlI GDGCHC 4 cut(s) 139, 172, 334, 348
MluCI AATT 1 cut(s) 21
MnlI CCTC 3 cut(s) 5, 251, 293
MseI TTAA 1 cut(s) 30
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 8 cut(s) 9, 35, 53, 65, 83, 153, 162, 216
MvaI CCWGG 7 cut(s) 9, 35, 53, 83, 153, 162, 216
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 290
NlaIII CATG 2 cut(s) 176, 311
NlaIV GGNNCC 2 cut(s) 6, 229
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 7 cut(s) 7, 33, 51, 81, 151, 160, 214
PspGI CCWGG 7 cut(s) 7, 33, 51, 81, 151, 160, 214
PspN4I GGNNCC 2 cut(s) 6, 229
PspPI GGNCC 4 cut(s) 4, 79, 280, 302
PstNI CAGNNNCTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 290
Sau96I GGNCC 4 cut(s) 4, 79, 280, 302
ScrFI CCNGG 8 cut(s) 9, 35, 53, 65, 83, 153, 162, 216
SduI GDGCHC 4 cut(s) 139, 172, 334, 348
SetI ASST 5 cut(s) 16, 139, 145, 233, 289
SfaNI GCATC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 349
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 8 cut(s) 7, 33, 51, 63, 81, 151, 160, 214
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 276
TasI AATT 1 cut(s) 21
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.