Rmu_sc0004942.1_g000011

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004942.1
OG0001435
Physical Location & Seq
Forward (+)
34717 .. 36183
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004942.1_g000011.1.cds

Sequence Viewer

Length: 1467 bp
atggcgagaaagcgaaagctcgattccaacgccaccgaggcctccgagccggctaagaagcagcagcagcagcagcagccggaggtcgtcgaggagccgaagccccagaacgaaccggccgaggaggtagaagaagaggtcgaggaggaggaagaggctgaggaggaagaggaggaggaggaggagtacgaggaggaagaagaggttgaggaagagcctggcgttgagtacatgcagaacaccgagactgtaaccgtgacgacgacgaccacgacggcggtggatccagttcaacccgtggccggcggcgaggagaacggcggcggtgaggatgatgaggacgagccgattcaggatcttctggagccgtttagtaaggaccagctggtgagtctgctgagggaggcggcggagagccaccgtgatgtgtcggatcggatccggaaggttgcggatgaggatccgatccaccggaagatctttgtccacgggcttgggtgggacaccaccgctgaaaccctaacctccgtgtttacggagtacggtgagattgaggattgcaaggctgtgtgtgataaggtctctggaaagtccaagggttatggtttcattctcttcaagacgcggtccggggctcggaaagctttgaagcagccgcagaagaagatcggaaatcggatgactgcctgccagctggcctcgttgggcccagcggcgacgcctactgcccctggcccggctgcggtgcccccggcccagccggtttcggagtacacattgaggaagatctatgtgagcaatgttggggcggatttagatcctcagaagctgcttatgttcttttcgaggtttggagaaattgaagaagggccgttggggttggataaggccactggaaggccgaaagggttttgcttgtttgtgtacaagtcggcagagagtgcaaagagggctttggaggagccgcacaagaattttgatggccacattttgcactgccagaaggcaattgacggtcccaagccggttaagtctcagcatgggaaccagcaccaccacaataggaataagaattccggttttggtggcggagcaccggcgggacctggccatatgatggccccaggaggtgctggaattgggtttaaccagggggctgcatcaacccaggcgttgaacccggcgcttggacaggccctggctttgcttgctacacagggggctggcctaaatctttttgggactttgggagctcaaggtgtgaaccctggtgtgcctggtggagcacatggaatacaaagtgggtatggcaatcagccaagtataagtcctggaatgatgggaacctatggaaatcaaggggcattgcagggaggctaccccaacccacagttgggccaaggtggatcaggaagagggccacatggtcttgggcaatatggtggtgctccatacacggggcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

488

Amino Acids

51.97

Weight (kDa)

4.89

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccII CGCG 1 cut(s) 625
AccIII TCCGGA 1 cut(s) 441
AcoI YGGCCR 4 cut(s) 117, 300, 982, 1108
AcsI RAATTY 2 cut(s) 973, 1072
AcyI GRCGYC 1 cut(s) 719
AfaI GTAC 5 cut(s) 188, 230, 542, 773, 926
AgsI TTSAA 5 cut(s) 293, 619, 649, 863, 1177
AluBI AGCT 6 cut(s) 19, 385, 644, 694, 829, 1253
AluI AGCT 6 cut(s) 19, 385, 644, 694, 829, 1253
Alw21I GWGCWC 4 cut(s) 1096, 1255, 1288, 1450
Alw26I GTCTC 3 cut(s) 239, 586, 1038
AlwNI CAGNNNCTG 2 cut(s) 829, 1198
Aor13HI TCCGGA 1 cut(s) 441
ApaI GGGCCC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 973, 1072
AspLEI GCGC 1 cut(s) 1186
AsuC2I CCSGG 4 cut(s) 631, 737, 752, 1181
AsuHPI GGTGA 3 cut(s) 338, 400, 557
AvaII GGWCC 4 cut(s) 379, 627, 1016, 1103
BaeGI GKGCMC 3 cut(s) 710, 750, 1464
BalI TGGCCA 2 cut(s) 984, 1110
BamHI GGATCC 3 cut(s) 283, 438, 460
BanI GGYRCC 1 cut(s) 745
BanII GRGCYC 3 cut(s) 637, 710, 1255
Bbv12I GWGCWC 4 cut(s) 1096, 1255, 1288, 1450
BbvCI CCTCAGC 2 cut(s) 159, 398
BccI CCATC 3 cut(s) 974, 1111, 1333
BceAI ACGGC 4 cut(s) 291, 334, 352, 856
BcnI CCSGG 4 cut(s) 631, 737, 752, 1181
BcoDI GTCTC 3 cut(s) 239, 586, 1038
BfaI CTAG 1 cut(s) 1465
BfoI RGCGCY 1 cut(s) 1187
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 2 cut(s) 477, 786
Bme18I GGWCC 4 cut(s) 379, 627, 1016, 1103
BmsI GCATC 1 cut(s) 1169
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 2 cut(s) 159, 398
BpuEI CTTGAG 1 cut(s) 1239
BpuMI CCSGG 4 cut(s) 631, 737, 752, 1181
BsaBI GATNNNNATC 2 cut(s) 459, 816
BsaHI GRCGYC 1 cut(s) 719
BsaI GGTCTC 1 cut(s) 586
BsaWI WCCGGW 3 cut(s) 441, 471, 1076
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse118I RCCGGY 6 cut(s) 49, 115, 302, 760, 1024, 1096
Bse1I ACTGG 2 cut(s) 287, 898
Bse3DI GCAATG 2 cut(s) 805, 1364
Bse8I GATNNNNATC 2 cut(s) 459, 816
BseAI TCCGGA 1 cut(s) 441
BseGI GGATG 3 cut(s) 337, 460, 684
BseJI GATNNNNATC 2 cut(s) 459, 816
BseMI GCAATG 2 cut(s) 805, 1364
BseMII CTCAG 4 cut(s) 150, 389, 836, 1049
BseNI ACTGG 2 cut(s) 287, 898
BseSI GKGCMC 3 cut(s) 710, 750, 1464
BseX3I CGGCCG 1 cut(s) 117
BseYI CCCAGC 2 cut(s) 709, 756
Bsh1236I CGCG 1 cut(s) 625
Bsh1285I CGRYCG 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 4 cut(s) 1096, 1255, 1288, 1450
BslFI GGGAC 4 cut(s) 515, 1002, 1116, 1255
BsmAI GTCTC 3 cut(s) 239, 586, 1038
BsmFI GGGAC 4 cut(s) 515, 1002, 1116, 1255
Bso31I GGTCTC 1 cut(s) 586
Bsp120I GGGCCC 1 cut(s) 706
Bsp1286I GDGCHC 8 cut(s) 637, 710, 750, 1096, 1255, 1288, 1450, 1464
Bsp13I TCCGGA 1 cut(s) 441
Bsp1407I TGTACA 1 cut(s) 924
BspCNI CTCAG 4 cut(s) 151, 390, 835, 1048
BspEI TCCGGA 1 cut(s) 441
BspFNI CGCG 1 cut(s) 625
BspQI GCTCTTC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 745
BspTNI GGTCTC 1 cut(s) 586
BsrDI GCAATG 2 cut(s) 805, 1364
BsrFI RCCGGY 6 cut(s) 49, 115, 302, 760, 1024, 1096
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 2 cut(s) 287, 898
BssAI RCCGGY 6 cut(s) 49, 115, 302, 760, 1024, 1096
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 2 cut(s) 594, 1399
Bst4CI ACNGT 6 cut(s) 250, 256, 422, 545, 1016, 1392
Bst6I CTCTTC 7 cut(s) 129, 147, 162, 195, 207, 620, 1408
BstACI GRCGYC 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 941
BstAUI TGTACA 1 cut(s) 924
BstC8I GCNNGC 7 cut(s) 51, 304, 688, 692, 696, 1209, 1225
BstDEI CTNAG 5 cut(s) 54, 159, 398, 822, 1035
BstDSI CCRYGG 2 cut(s) 297, 487
BstF5I GGATG 3 cut(s) 337, 460, 684
BstFNI CGCG 1 cut(s) 625
BstH2I RGCGCY 1 cut(s) 1187
BstHHI GCGC 1 cut(s) 1186
BstMAI GTCTC 3 cut(s) 239, 586, 1038
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 9 cut(s) 38, 67, 70, 73, 76, 641, 941, 950, 1208
BstNSI RCATGY 1 cut(s) 235
BstSLI GKGCMC 3 cut(s) 710, 750, 1464
BstUI CGCG 1 cut(s) 625
BstX2I RGATCY 7 cut(s) 283, 355, 438, 460, 477, 786, 817
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 7 cut(s) 283, 355, 438, 460, 477, 786, 817
BstZI CGGCCG 1 cut(s) 117
BtgI CCRYGG 2 cut(s) 297, 487
BtsCI GGATG 3 cut(s) 337, 460, 684
BtsI GCAGTG 1 cut(s) 994
BtsIMutI CAGTG 2 cut(s) 891, 994
Cac8I GCNNGC 7 cut(s) 51, 304, 688, 692, 696, 1209, 1225
CaiI CAGNNNCTG 2 cut(s) 829, 1198
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 6 cut(s) 49, 115, 302, 760, 1024, 1096
CpoI CGGWCCG 1 cut(s) 627
CseI GACGC 2 cut(s) 631, 727
Csp6I GTAC 5 cut(s) 187, 229, 541, 772, 925
CspI CGGWCCG 1 cut(s) 627
CviAII CATG 4 cut(s) 232, 1040, 1289, 1424
CviQI GTAC 5 cut(s) 187, 229, 541, 772, 925
DdeI CTNAG 5 cut(s) 54, 159, 398, 822, 1035
EaeI YGGCCR 4 cut(s) 117, 300, 982, 1108
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 7 cut(s) 129, 147, 162, 195, 207, 620, 1408
EarI CTCTTC 7 cut(s) 129, 147, 162, 195, 207, 620, 1408
EciI GGCGGA 3 cut(s) 425, 824, 1104
Ecl136II GAGCTC 1 cut(s) 1253
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 594, 1399
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 3 cut(s) 637, 710, 1255
Eco31I GGTCTC 1 cut(s) 586
Eco47I GGWCC 4 cut(s) 379, 627, 1016, 1103
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 1253
EcoICRI GAGCTC 1 cut(s) 1253
EcoO109I RGGNCCY 2 cut(s) 1103, 1195
EcoRI GAATTC 1 cut(s) 1072
EcoT14I CCWWGG 2 cut(s) 594, 1399
EcoT38I GRGCYC 3 cut(s) 637, 710, 1255
ErhI CCWWGG 2 cut(s) 594, 1399
FaeI CATG 4 cut(s) 235, 1043, 1292, 1427
FaqI GGGAC 4 cut(s) 515, 1002, 1116, 1255
FatI CATG 4 cut(s) 231, 1039, 1288, 1423
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 1 cut(s) 1113
FokI GGATG 3 cut(s) 344, 467, 691
FriOI GRGCYC 3 cut(s) 637, 710, 1255
FspBI CTAG 1 cut(s) 1465
GlaI GCGC 1 cut(s) 1185
GsaI CCCAGC 2 cut(s) 713, 760
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 1187
HgaI GACGC 2 cut(s) 631, 727
HhaI GCGC 1 cut(s) 1186
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 4 cut(s) 235, 1043, 1292, 1427
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 3 cut(s) 23, 349, 391
HphI GGTGA 3 cut(s) 338, 400, 557
Hpy166II GTNNAC 5 cut(s) 487, 534, 774, 925, 1264
Hpy188I TCNGA 9 cut(s) 46, 433, 438, 465, 639, 671, 678, 769, 825
Hpy188III TCNNGA 6 cut(s) 353, 362, 442, 585, 619, 1410
Hpy8I GTNNAC 5 cut(s) 487, 534, 774, 925, 1264
Hpy99I CGWCG 5 cut(s) 92, 265, 268, 277, 721
HpyAV CCTTC 4 cut(s) 439, 860, 891, 997
HpyCH4III ACNGT 6 cut(s) 250, 256, 422, 545, 1016, 1392
HpyCH4V TGCA 6 cut(s) 235, 561, 944, 994, 1160, 1369
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 67, 70, 73, 76, 641, 941, 950, 1208
HpyF3I CTNAG 5 cut(s) 54, 159, 398, 822, 1035
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 4 cut(s) 235, 1043, 1292, 1427
HspAI GCGC 1 cut(s) 1184
Kpn2I TCCGGA 1 cut(s) 441
KroI GCCGGC 2 cut(s) 49, 302
KroNI GCCGGC 2 cut(s) 51, 304
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 7 cut(s) 94, 364, 961, 1091, 1250, 1283, 1453
LweI GCATC 1 cut(s) 1169
MaeI CTAG 1 cut(s) 1465
MaeIII GTNAC 2 cut(s) 250, 256
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 7 cut(s) 283, 355, 438, 460, 477, 786, 817
MhlI GDGCHC 8 cut(s) 637, 710, 750, 1096, 1255, 1288, 1450, 1464
MlsI TGGCCA 2 cut(s) 984, 1110
MluCI AATT 5 cut(s) 858, 973, 1008, 1072, 1137
MluNI TGGCCA 2 cut(s) 984, 1110
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 3 cut(s) 51, 411, 861
Mox20I TGGCCA 2 cut(s) 984, 1110
MroI TCCGGA 1 cut(s) 441
MroNI GCCGGC 2 cut(s) 49, 302
MscI TGGCCA 2 cut(s) 984, 1110
MseI TTAA 2 cut(s) 1029, 1146
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 2 cut(s) 984, 1110
MspA1I CMGCKG 4 cut(s) 385, 512, 694, 713
MunI CAATTG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 625
MwoI GCNNNNNNNGC 9 cut(s) 38, 67, 70, 73, 76, 641, 941, 950, 1208
NaeI GCCGGC 2 cut(s) 51, 304
NciI CCSGG 4 cut(s) 631, 737, 752, 1181
NdeI CATATG 1 cut(s) 1113
NgoMIV GCCGGC 2 cut(s) 49, 302
NlaIII CATG 4 cut(s) 235, 1043, 1292, 1427
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 235
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 269
PdiI GCCGGC 2 cut(s) 51, 304
PfeI GAWTC 2 cut(s) 23, 349
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 1117
PfoI TCCNGGA 1 cut(s) 1330
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 1103
Psp124BI GAGCTC 1 cut(s) 1255
Psp5II RGGWCCY 1 cut(s) 1103
PspFI CCCAGC 2 cut(s) 709, 756
PspOMI GGGCCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 1103
PstNI CAGNNNCTG 2 cut(s) 829, 1198
PsuI RGATCY 7 cut(s) 283, 355, 438, 460, 477, 786, 817
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 385, 694
RsaI GTAC 5 cut(s) 188, 230, 542, 773, 926
RsaNI GTAC 5 cut(s) 187, 229, 541, 772, 925
RseI CAYNNNNRTG 1 cut(s) 423
Rsr2I CGGWCCG 1 cut(s) 627
RsrII CGGWCCG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 1255
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 1029, 1146
SchI GAGTC 1 cut(s) 400
SduI GDGCHC 8 cut(s) 637, 710, 750, 1096, 1255, 1288, 1450, 1464
SfaNI GCATC 1 cut(s) 1169
SgrAI CRCCGGYG 1 cut(s) 1096
SinI GGWCC 4 cut(s) 379, 627, 1016, 1103
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 1254
SmoI CTYRAG 1 cut(s) 1254
Sse9I AATT 5 cut(s) 858, 973, 1008, 1072, 1137
SseBI AGGCCT 1 cut(s) 41
SspMI CTAG 1 cut(s) 1465
SstI GAGCTC 1 cut(s) 1255
StuI AGGCCT 1 cut(s) 41
StyI CCWWGG 2 cut(s) 594, 1399
TaaI ACNGT 6 cut(s) 250, 256, 422, 545, 1016, 1392
TaqI TCGA 4 cut(s) 21, 90, 141, 845
TasI AATT 5 cut(s) 858, 973, 1008, 1072, 1137
TatI WGTACW 3 cut(s) 228, 771, 924
TauI GCSGC 6 cut(s) 309, 324, 410, 658, 716, 967
TfiI GAWTC 2 cut(s) 23, 349
Tru1I TTAA 2 cut(s) 1029, 1146
Tru9I TTAA 2 cut(s) 1029, 1146
TscAI CASTG 2 cut(s) 898, 1001
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 598
TspGWI ACGGA 2 cut(s) 517, 551
TspRI CASTG 2 cut(s) 898, 1001
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 1117
VpaK11BI GGWCC 4 cut(s) 379, 627, 1016, 1103
XapI RAATTY 2 cut(s) 973, 1072
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 1390
XspI CTAG 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.