MD15G1332000.v1.1

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001435
Physical Location & Seq
Reverse (-)
36807661 .. 36810608
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1332000.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGGCGAAAAAGAGAAAGCTCAGCTCCACCGAGCCCTCCGAACCCTCCAAGAAGCAACAACAGGTCGTTGAGGAACCCAAACCCCAAATTGAACCAGCACAGGAAGTAGTCGAAGAGGAAGAAGAAGAAGTCGAAGAAGAGGAGGTGGAGGAGGAAGAGCCGGAAGAAGAGAAGGAAGATGAAGGAGCCGATGAAGAGGAAGAGGAAGAAGAGGAGGACGAAGAGGAGCCGGGCGCTGAGTATAAGGAAACCTATAACGTAACCACGACCTCCATCTCAGCGGCTTCGGATCAGGCCGGTGCCGGTAACGACGAGGACGAGCCGATCCAGAATCTTCTAGAACCATTCACCAAGGAACAGCTTATGGCCCTGCTCCGCGAAGCTGCCGATAATCATGGCGACGTGGCGGATCGGATCCGGAAGGTTGCGGATGAGGACCCAATCCACCGCAAGATCTTCGTCCACGGTCTCGGATGGGATACCAACGCCGAAACCCTAACTGGCGTATTTAGGGAATACGGTGAGATTGAGGATTGCAAGGCTGTTTGCGATAAGGTCTCTGGTAAGTCCAAGGGTTACGGTTTCATTCTCTTCAAGACTCGTTCTGGGGCCCGAAAAGCCCTACAGCAGCCCCAGAAGAGGATCGGTAATCGGATGACTGCATGCCAGCTGGCGGCAATTGGCCCTGGCCCGGCTCCTAATGCCGCTGCTGGACCTGTGGTGGCCCAGGCGGCTCAGTCCCAGCCAATGTCTGAGTACACTCAGAGGAAGATCTATGTGAGCAATGTTGGGGCGGACTTGGATATCCAGAAGCTGCTTATGTTCTTTTCTAGGTTTGGAGAAGTTGAGGACGGGCCACTAGGGCTCGATAAGCTAACGGGGAGGCCTAAGGGGTTTTGCTTGTTTGTGTACAAGTCGGCAGAGAGTGCGAAGAGGGCTCTGGAAGAGCCACACAAGAATTTTGAGGGCCATATTTTGCATTGCCAGAAGGCTATTGACGGTCCAAAGCCGGGCAAGTCTCAGCACCAGCACCAGAACCAGCACCACCACAAGTCACATAATTCCAAGTTTCAGAGGAATGAGAATCCAGGTTATGCAGGTGGAGCTGCATCAGGAATGGGGCATTTGATGGCGCCTGCGAGTGGAGGGATTGGATTTAATCAGGGGGCTCCTGCAGCCCAGGCGTTTAACCCGGCAATTGGGCAGGCACTGACTGCTTTGCTTGCAACACAGGGAGCTGGCTTGGGGTTGACAAACCTTTTGGGGACGTTTGGATCTGCTCCAAATGTGAACCCAGGTGTTCCTGGTGCAGGACATGTGATACAGGGTGGATATGGGAATCAGGCAAGTATTAGTCCTGGGATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGGTGGCTACCCTAACCCGCAGTTAGGGCAAGGTGGTTCAGGAAGAGGGCAGCATGGCGTTGGGCAATCTGGTGGCGCTCCATCCCACATAGGTGCATCAGTCTTTTTGTACTGGTCTGCTGATTCTTCTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

512

Amino Acids

54.61

Weight (kDa)

4.94

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 152 - 215 2.3e-13 RNA recognition motif
RRM_1 PF00076 258 - 326 5.4e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 1088
AccB1I GGYRCC 2 cut(s) 299, 1132
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 417
AclWI GGATC 7 cut(s) 297, 319, 409, 417, 422, 650, 1282
AcsI RAATTY 1 cut(s) 958
AcyI GRCGYC 1 cut(s) 1133
AfaI GTAC 3 cut(s) 758, 911, 1508
AfiI CCNNNNNNNGG 8 cut(s) 639, 673, 691, 1010, 1142, 1199, 1310, 1421
AflIII ACRYGT 1 cut(s) 1315
AgsI TTSAA 2 cut(s) 92, 595
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 7 cut(s) 685, 726, 1087, 1179, 1294, 1303, 1357
AleI CACNNNNGTG 1 cut(s) 1488
Alw26I GTCTC 3 cut(s) 473, 562, 1023
AlwI GGATC 7 cut(s) 297, 319, 409, 417, 422, 650, 1282
AlwNI CAGNNNCTG 2 cut(s) 814, 1210
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 9 cut(s) 294, 366, 609, 682, 688, 723, 854, 884, 967
ApaI GGGCCC 1 cut(s) 613
ApeKI GCWGC 7 cut(s) 383, 628, 707, 814, 1106, 1175, 1447
ApoI RAATTY 1 cut(s) 958
ArsI GACNNNNNNTTYG 2 cut(s) 1243, 1275
AspLEI GCGC 3 cut(s) 236, 1135, 1475
AsuC2I CCSGG 4 cut(s) 231, 692, 1011, 1193
AsuHPI GGTGA 2 cut(s) 340, 533
AvaII GGWCC 3 cut(s) 436, 713, 1001
AxyI CCTNAGG 1 cut(s) 888
BaeGI GKGCMC 1 cut(s) 613
BamHI GGATCC 1 cut(s) 414
BanI GGYRCC 2 cut(s) 299, 1132
BanII GRGCYC 5 cut(s) 36, 613, 867, 940, 1171
BbvI GCAGC 7 cut(s) 370, 640, 694, 801, 1093, 1187, 1459
BccI CCATC 5 cut(s) 281, 468, 1123, 1360, 1486
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 7 cut(s) 687, 728, 1089, 1181, 1296, 1305, 1359
BciVI GTATCC 1 cut(s) 472
BcnI CCSGG 4 cut(s) 231, 692, 1011, 1193
BcoDI GTCTC 3 cut(s) 473, 562, 1023
BfaI CTAG 3 cut(s) 338, 831, 860
BfmI CTRYAG 2 cut(s) 623, 1173
BfoI RGCGCY 3 cut(s) 237, 1136, 1476
BfuAI ACCTGC 1 cut(s) 1088
BfuI GTATCC 1 cut(s) 472
BglI GCCNNNNNGGC 2 cut(s) 731, 862
BglII AGATCT 2 cut(s) 453, 771
BlpI GCTNAGC 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 436, 713, 1001
BmgBI CACGTC 1 cut(s) 403
BmsI GCATC 2 cut(s) 1118, 1502
Bpu1102I GCTNAGC 1 cut(s) 20
BpuMI CCSGG 4 cut(s) 231, 692, 1011, 1193
BsaHI GRCGYC 1 cut(s) 1133
BsaI GGTCTC 2 cut(s) 473, 562
BsaJI CCNNGG 8 cut(s) 351, 463, 570, 685, 726, 1179, 1294, 1358
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 8 cut(s) 639, 673, 691, 1010, 1142, 1199, 1310, 1421
Bse118I RCCGGY 2 cut(s) 296, 302
Bse1I ACTGG 2 cut(s) 505, 1514
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 3 cut(s) 790, 979, 1398
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 7 cut(s) 687, 728, 1089, 1181, 1296, 1305, 1359
BseDI CCNNGG 8 cut(s) 351, 463, 570, 685, 726, 1179, 1294, 1358
BseGI GGATG 5 cut(s) 436, 479, 660, 1368, 1478
BseLI CCNNNNNNNGG 8 cut(s) 639, 673, 691, 1010, 1142, 1199, 1310, 1421
BseMI GCAATG 3 cut(s) 790, 979, 1398
BseMII CTCAG 7 cut(s) 34, 228, 291, 744, 749, 776, 1034
BseNI ACTGG 2 cut(s) 505, 1514
BseRI GAGGAG 4 cut(s) 155, 164, 227, 239
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 7 cut(s) 370, 640, 694, 801, 1093, 1187, 1459
BseYI CCCAGC 1 cut(s) 741
BsgI GTGCAG 1 cut(s) 1329
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 9 cut(s) 296, 368, 611, 684, 690, 725, 856, 886, 969
BshNI GGYRCC 2 cut(s) 299, 1132
BsiSI CCGG 8 cut(s) 161, 230, 297, 303, 418, 692, 1010, 1193
BslFI GGGAC 2 cut(s) 724, 1279
BslI CCNNNNNNNGG 8 cut(s) 639, 673, 691, 1010, 1142, 1199, 1310, 1421
BsmAI GTCTC 3 cut(s) 473, 562, 1023
BsmFI GGGAC 2 cut(s) 724, 1279
BsnI GGCC 9 cut(s) 296, 368, 611, 684, 690, 725, 856, 886, 969
Bso31I GGTCTC 2 cut(s) 473, 562
Bsp120I GGGCCC 1 cut(s) 609
Bsp1286I GDGCHC 5 cut(s) 36, 613, 867, 940, 1171
Bsp13I TCCGGA 1 cut(s) 417
Bsp1407I TGTACA 1 cut(s) 909
Bsp143I GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
Bsp1720I GCTNAGC 1 cut(s) 20
BspANI GGCC 9 cut(s) 296, 368, 611, 684, 690, 725, 856, 886, 969
BspCNI CTCAG 7 cut(s) 33, 229, 290, 745, 748, 775, 1033
BspEI TCCGGA 1 cut(s) 417
BspFNI CGCG 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 1177
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 7 cut(s) 297, 319, 409, 417, 422, 650, 1282
BspQI GCTCTTC 2 cut(s) 150, 939
BspT107I GGYRCC 2 cut(s) 299, 1132
BspTNI GGTCTC 2 cut(s) 473, 562
BsrDI GCAATG 3 cut(s) 790, 979, 1398
BsrFI RCCGGY 2 cut(s) 296, 302
BsrGI TGTACA 1 cut(s) 909
BsrI ACTGG 2 cut(s) 505, 1514
BssAI RCCGGY 2 cut(s) 296, 302
BssECI CCNNGG 8 cut(s) 351, 463, 570, 685, 726, 1179, 1294, 1358
BssMI GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
BssNI GRCGYC 1 cut(s) 1133
BssT1I CCWWGG 2 cut(s) 351, 570
Bst2UI CCWGG 7 cut(s) 687, 728, 1089, 1181, 1296, 1305, 1359
Bst4CI ACNGT 4 cut(s) 467, 521, 581, 1001
BstACI GRCGYC 1 cut(s) 1133
BstAPI GCANNNNNTGC 2 cut(s) 926, 1214
BstAUI TGTACA 1 cut(s) 909
BstC8I GCNNGC 7 cut(s) 664, 668, 672, 1137, 1206, 1224, 1240
BstDEI CTNAG 8 cut(s) 20, 237, 277, 735, 753, 762, 888, 1020
BstDSI CCRYGG 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 1308
BstF5I GGATG 5 cut(s) 436, 479, 660, 1368, 1478
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 3 cut(s) 237, 1136, 1476
BstHHI GCGC 3 cut(s) 236, 1135, 1475
BstKTI GATC 8 cut(s) 292, 327, 412, 417, 456, 645, 774, 1277
BstMAI GTCTC 3 cut(s) 473, 562, 1023
BstMBI GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
BstNI CCWGG 7 cut(s) 687, 728, 1089, 1181, 1296, 1305, 1359
BstNSI RCATGY 2 cut(s) 666, 1319
BstSFI CTRYAG 2 cut(s) 623, 1173
BstSLI GKGCMC 1 cut(s) 613
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 7 cut(s) 370, 640, 694, 801, 1093, 1187, 1459
BstX2I RGATCY 4 cut(s) 414, 453, 771, 1274
BstYI RGATCY 4 cut(s) 414, 453, 771, 1274
Bsu36I CCTNAGG 1 cut(s) 888
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 9 cut(s) 296, 368, 611, 684, 690, 725, 856, 886, 969
BtgI CCRYGG 1 cut(s) 463
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 5 cut(s) 436, 479, 660, 1368, 1478
BtsIMutI CAGTG 1 cut(s) 1208
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 7 cut(s) 664, 668, 672, 1137, 1206, 1224, 1240
CaiI CAGNNNCTG 2 cut(s) 814, 1210
CfoI GCGC 3 cut(s) 236, 1135, 1475
Cfr10I RCCGGY 2 cut(s) 296, 302
Csp6I GTAC 3 cut(s) 757, 910, 1507
CviAII CATG 4 cut(s) 395, 663, 1316, 1451
CviQI GTAC 3 cut(s) 757, 910, 1507
DdeI CTNAG 8 cut(s) 20, 237, 277, 735, 753, 762, 888, 1020
DinI GGCGCC 1 cut(s) 1134
DpnI GATC 8 cut(s) 291, 326, 411, 416, 455, 644, 773, 1276
DpnII GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
EciI GGCGGA 2 cut(s) 422, 809
Eco130I CCWWGG 2 cut(s) 351, 570
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 5 cut(s) 36, 613, 867, 940, 1171
Eco31I GGTCTC 2 cut(s) 473, 562
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 3 cut(s) 436, 713, 1001
Eco81I CCTNAGG 1 cut(s) 888
EcoNI CCTNNNNNAGG 1 cut(s) 1308
EcoO109I RGGNCCY 2 cut(s) 436, 609
EcoRII CCWGG 7 cut(s) 685, 726, 1087, 1179, 1294, 1303, 1357
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 351, 570
EcoT38I GRGCYC 5 cut(s) 36, 613, 867, 940, 1171
EgeI GGCGCC 1 cut(s) 1134
EheI GGCGCC 1 cut(s) 1134
ErhI CCWWGG 2 cut(s) 351, 570
FaeI CATG 4 cut(s) 398, 666, 1319, 1454
FaqI GGGAC 2 cut(s) 724, 1279
FatI CATG 4 cut(s) 394, 662, 1315, 1450
FauI CCCGC 1 cut(s) 1422
FokI GGATG 5 cut(s) 443, 486, 667, 1375, 1465
FriOI GRGCYC 5 cut(s) 36, 613, 867, 940, 1171
FspBI CTAG 3 cut(s) 338, 831, 860
GlaI GCGC 3 cut(s) 235, 1134, 1474
GsaI CCCAGC 1 cut(s) 745
HaeII RGCGCY 3 cut(s) 237, 1136, 1476
HaeIII GGCC 9 cut(s) 296, 368, 611, 684, 690, 725, 856, 886, 969
HapII CCGG 8 cut(s) 161, 230, 297, 303, 418, 692, 1010, 1193
HhaI GCGC 3 cut(s) 236, 1135, 1475
Hin1I GRCGYC 1 cut(s) 1133
Hin1II CATG 4 cut(s) 398, 666, 1319, 1454
Hin6I GCGC 3 cut(s) 234, 1133, 1473
HinP1I GCGC 3 cut(s) 234, 1133, 1473
HincII GTYRAC 1 cut(s) 1251
HindII GTYRAC 1 cut(s) 1251
HinfI GANTC 5 cut(s) 331, 598, 1084, 1339, 1520
HpaII CCGG 8 cut(s) 161, 230, 297, 303, 418, 692, 1010, 1193
HphI GGTGA 2 cut(s) 340, 533
Hpy166II GTNNAC 5 cut(s) 463, 759, 910, 1251, 1291
Hpy188I TCNGA 9 cut(s) 40, 289, 414, 473, 654, 754, 765, 1074, 1528
Hpy188III TCNNGA 8 cut(s) 328, 338, 418, 595, 808, 941, 1113, 1437
Hpy8I GTNNAC 5 cut(s) 463, 759, 910, 1251, 1291
Hpy99I CGWCG 2 cut(s) 314, 404
HpyAV CCTTC 4 cut(s) 166, 176, 415, 982
HpyCH4III ACNGT 4 cut(s) 467, 521, 581, 1001
HpyCH4IV ACGT 3 cut(s) 258, 402, 1268
HpyF3I CTNAG 8 cut(s) 20, 237, 277, 735, 753, 762, 888, 1020
HpySE526I ACGT 3 cut(s) 258, 402, 1268
Hsp92I GRCGYC 1 cut(s) 1133
Hsp92II CATG 4 cut(s) 398, 666, 1319, 1454
HspAI GCGC 3 cut(s) 234, 1133, 1473
KasI GGCGCC 1 cut(s) 1132
Kpn2I TCCGGA 1 cut(s) 417
Kzo9I GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
LguI GCTCTTC 2 cut(s) 150, 939
Lsp1109I GCAGC 7 cut(s) 370, 640, 694, 801, 1093, 1187, 1459
LweI GCATC 2 cut(s) 1118, 1502
MaeI CTAG 3 cut(s) 338, 831, 860
MaeII ACGT 3 cut(s) 258, 402, 1268
MaeIII GTNAC 4 cut(s) 259, 305, 575, 1053
MalI GATC 8 cut(s) 291, 326, 411, 416, 455, 644, 773, 1276
MboI GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
MfeI CAATTG 2 cut(s) 678, 1197
MflI RGATCY 4 cut(s) 414, 453, 771, 1274
MhlI GDGCHC 5 cut(s) 36, 613, 867, 940, 1171
MluCI AATT 5 cut(s) 87, 678, 958, 1060, 1197
Mly113I GGCGCC 1 cut(s) 1133
MlyI GAGTC 1 cut(s) 592
MroI TCCGGA 1 cut(s) 417
MseI TTAA 3 cut(s) 1158, 1188, 1534
MslI CAYNNNNRTG 1 cut(s) 1488
MspA1I CMGCKG 3 cut(s) 281, 670, 707
MspI CCGG 8 cut(s) 161, 230, 297, 303, 418, 692, 1010, 1193
MunI CAATTG 2 cut(s) 678, 1197
MvaI CCWGG 7 cut(s) 687, 728, 1089, 1181, 1296, 1305, 1359
MvnI CGCG 1 cut(s) 378
NarI GGCGCC 1 cut(s) 1133
NciI CCSGG 4 cut(s) 231, 692, 1011, 1193
NdeII GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
NlaIII CATG 4 cut(s) 398, 666, 1319, 1454
NmuCI GTSAC 1 cut(s) 1053
NspI RCATGY 2 cut(s) 666, 1319
OliI CACNNNNGTG 1 cut(s) 1488
PaeI GCATGC 1 cut(s) 666
PaqCI CACCTGC 1 cut(s) 1088
PceI AGGCCT 1 cut(s) 886
PciI ACATGT 1 cut(s) 1315
PciSI GCTCTTC 2 cut(s) 150, 939
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 4 cut(s) 331, 1084, 1339, 1520
PleI GAGTC 1 cut(s) 592
PluTI GGCGCC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 436
PscI ACATGT 1 cut(s) 1315
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 7 cut(s) 685, 726, 1087, 1179, 1294, 1303, 1357
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 7 cut(s) 685, 726, 1087, 1179, 1294, 1303, 1357
PspOMI GGGCCC 1 cut(s) 609
PspPPI RGGWCCY 1 cut(s) 436
PstI CTGCAG 1 cut(s) 1177
PstNI CAGNNNCTG 2 cut(s) 814, 1210
PsuI RGATCY 4 cut(s) 414, 453, 771, 1274
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 3 cut(s) 758, 911, 1508
RsaNI GTAC 3 cut(s) 757, 910, 1507
RseI CAYNNNNRTG 1 cut(s) 1488
SapI GCTCTTC 2 cut(s) 150, 939
SaqAI TTAA 3 cut(s) 1158, 1188, 1534
Sau3AI GATC 8 cut(s) 289, 324, 409, 414, 453, 642, 771, 1274
SchI GAGTC 1 cut(s) 592
SduI GDGCHC 5 cut(s) 36, 613, 867, 940, 1171
SfaNI GCATC 2 cut(s) 1118, 1502
SfcI CTRYAG 2 cut(s) 623, 1173
SfoI GGCGCC 1 cut(s) 1134
SinI GGWCC 3 cut(s) 436, 713, 1001
SmiMI CAYNNNNRTG 1 cut(s) 1488
SphI GCATGC 1 cut(s) 666
Sse9I AATT 5 cut(s) 87, 678, 958, 1060, 1197
SseBI AGGCCT 1 cut(s) 886
SspDI GGCGCC 1 cut(s) 1132
SspMI CTAG 3 cut(s) 338, 831, 860
StuI AGGCCT 1 cut(s) 886
StyI CCWWGG 2 cut(s) 351, 570
TaaI ACNGT 4 cut(s) 467, 521, 581, 1001
TaiI ACGT 3 cut(s) 261, 405, 1271
TaqI TCGA 3 cut(s) 111, 132, 867
TasI AATT 5 cut(s) 87, 678, 958, 1060, 1197
TatI WGTACW 3 cut(s) 756, 909, 1506
TauI GCSGC 4 cut(s) 284, 677, 707, 734
TfiI GAWTC 4 cut(s) 331, 1084, 1339, 1520
Tru1I TTAA 3 cut(s) 1158, 1188, 1534
Tru9I TTAA 3 cut(s) 1158, 1188, 1534
TscAI CASTG 1 cut(s) 1215
TseFI GTSAC 1 cut(s) 1053
TseI GCWGC 7 cut(s) 383, 628, 707, 814, 1106, 1175, 1447
Tsp45I GTSAC 1 cut(s) 1053
TspDTI ATGAA 3 cut(s) 195, 207, 574
TspRI CASTG 1 cut(s) 1215
VpaK11BI GGWCC 3 cut(s) 436, 713, 1001
XagI CCTNNNNNAGG 1 cut(s) 1308
XapI RAATTY 1 cut(s) 958
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 2 cut(s) 666, 1319
XspI CTAG 3 cut(s) 338, 831, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.