FvH4_6g18930

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001435
Physical Location & Seq
Forward (+)
12519136 .. 12519646
511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18930.t1

Sequence Viewer

Length: 462 bp
ATGAGTTCGACATTGGAGATCTCCGTGCGTGACTCGCCGTTGGAGCAGTTCTTAGGCGGCATTATCTTCGACCTCTCCGACGTGCCGAAGGCGGCGCAGGTGATCAAAATTCCGGTAGAGTCTCCGGCGATATCCAACTCTCTGCAAGGAGTAGCTCATAACCTTCGCCGCCACTGCAAGATCTTTGTCCACGGCCTCGGCTGGGACACCACTCGCGAAGTCCTCGTCTCCGCCTTCGAGCCTTTCGGCGAGGTCGAGGACTCCAATCTCGTCATGGACAAACTCACCGGAAAAGCCAAAGGCTACGGCTTCGTCCTCTTCAAGACCCGCCGCGCTGCTCTCAAAGCCTTAAGGAAGCCCAGGAAGACCATTGGCGGCCGCTGCGCCTCCTGCCAGCTCACCTCTGTCAGTCCCGGCACCAACACTAACACCAACGCTGCGGCGACGCCGTCTGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006366 GO:0006396 GO:0006397 GO:0006401 GO:0006417 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009299 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032268 GO:0032270 GO:0032501 GO:0032774 GO:0032991 GO:0033043 GO:0033044 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042752 GO:0042789 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043565 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0046700 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097167 GO:0097659 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902680 GO:1903311 GO:1903506 GO:1903508 GO:1904353 GO:1904355 GO:1905661 GO:1905663 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

154

Amino Acids

16.47

Weight (kDa)

9.33

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 61 - 128 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 416
AccII CGCG 2 cut(s) 216, 333
AciI CCGC 9 cut(s) 57, 92, 169, 231, 328, 331, 375, 379, 440
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 202
AflII CTTAAG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 322
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 2 cut(s) 155, 397
AluI AGCT 2 cut(s) 155, 397
Alw26I GTCTC 2 cut(s) 126, 232
AoxI GGCC 2 cut(s) 193, 376
ApeKI GCWGC 3 cut(s) 335, 381, 437
ApoI RAATTY 1 cut(s) 108
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 3 cut(s) 97, 335, 386
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 3 cut(s) 112, 277, 391
BanI GGYRCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 3 cut(s) 322, 368, 424
BceAI ACGGC 4 cut(s) 22, 208, 322, 433
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 361
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 126, 232
BfrI CTTAAG 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 88
BglII AGATCT 2 cut(s) 18, 180
Bme1390I CCNGG 2 cut(s) 361, 414
BmgBI CACGTC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 361, 414
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 190, 196, 359
BsaWI WCCGGW 2 cut(s) 112, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 190, 196, 359
BseLI CCNNNNNNNGG 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 376
BseXI GCAGC 3 cut(s) 322, 368, 424
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 2 cut(s) 216, 333
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 195, 378
BshNI GGYRCC 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 379
BsiSI CCGG 4 cut(s) 113, 125, 288, 414
BslFI GGGAC 2 cut(s) 218, 396
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 126, 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 218, 396
BsnI GGCC 2 cut(s) 195, 378
Bsp143I GATC 3 cut(s) 18, 102, 180
Bsp68I TCGCGA 1 cut(s) 216
BspACI CCGC 9 cut(s) 57, 92, 169, 231, 328, 331, 375, 379, 440
BspANI GGCC 2 cut(s) 195, 378
BspFNI CGCG 2 cut(s) 216, 333
BspLI GGNNCC 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 416
BspTI CTTAAG 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 190, 196, 359
BssMI GATC 3 cut(s) 18, 102, 180
BssNI GRCGYC 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 446
BstAFI CTTAAG 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 190
BstFNI CGCG 2 cut(s) 216, 333
BstHHI GCGC 3 cut(s) 97, 335, 386
BstKTI GATC 3 cut(s) 21, 105, 183
BstMAI GTCTC 2 cut(s) 126, 232
BstMBI GATC 3 cut(s) 18, 102, 180
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 6 cut(s) 34, 43, 174, 344, 381, 390
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 359, 412
BstUI CGCG 2 cut(s) 216, 333
BstV1I GCAGC 3 cut(s) 322, 368, 424
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 2 cut(s) 18, 180
BstYI RGATCY 2 cut(s) 18, 180
BstZI CGGCCG 1 cut(s) 376
BsuRI GGCC 2 cut(s) 195, 378
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BtuMI TCGCGA 1 cut(s) 216
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 395
CciNI GCGGCCGC 1 cut(s) 376
CfoI GCGC 3 cut(s) 97, 335, 386
CseI GACGC 1 cut(s) 454
CviAII CATG 1 cut(s) 274
DdeI CTNAG 1 cut(s) 52
DpnI GATC 3 cut(s) 20, 104, 182
DpnII GATC 3 cut(s) 18, 102, 180
EaeI YGGCCR 1 cut(s) 376
EagI CGGCCG 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 376
Eco32I GATATC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 1 cut(s) 277
FaiI YATR 3 cut(s) 159, 275, 460
FaqI GGGAC 2 cut(s) 218, 396
FatI CATG 1 cut(s) 273
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 102
GlaI GCGC 3 cut(s) 96, 334, 385
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 195, 378
HapII CCGG 4 cut(s) 113, 125, 288, 414
HgaI GACGC 1 cut(s) 454
HhaI GCGC 3 cut(s) 97, 335, 386
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 3 cut(s) 95, 333, 384
HinP1I GCGC 3 cut(s) 95, 333, 384
HinfI GANTC 4 cut(s) 32, 119, 260, 455
HpaII CCGG 4 cut(s) 113, 125, 288, 414
HphI GGTGA 3 cut(s) 112, 277, 391
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 79, 454
Hpy188III TCNNGA 2 cut(s) 215, 322
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 2 cut(s) 83, 448
HpyAV CCTTC 3 cut(s) 82, 173, 244
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 145, 177
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 43, 174, 344, 381, 390
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 3 cut(s) 95, 333, 384
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 18, 102, 180
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 3 cut(s) 322, 368, 424
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 20, 104, 182
MboI GATC 3 cut(s) 18, 102, 180
MboII GAAGA 3 cut(s) 58, 310, 376
MflI RGATCY 2 cut(s) 18, 180
MluCI AATT 1 cut(s) 108
MlyI GAGTC 3 cut(s) 26, 128, 254
MmeI TCCRAC 3 cut(s) 21, 102, 159
MnlI CCTC 8 cut(s) 83, 206, 233, 244, 250, 326, 397, 412
MseI TTAA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 381
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 4 cut(s) 113, 125, 288, 414
MspR9I CCNGG 2 cut(s) 361, 414
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 2 cut(s) 216, 333
MwoI GCNNNNNNNGC 6 cut(s) 34, 43, 174, 344, 381, 390
NciI CCSGG 1 cut(s) 414
NdeII GATC 3 cut(s) 18, 102, 180
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 29
NotI GCGGCCGC 1 cut(s) 376
NruI TCGCGA 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 252
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 448
PleI GAGTC 3 cut(s) 26, 127, 254
PpsI GAGTC 3 cut(s) 26, 127, 254
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 418
PsuI RGATCY 2 cut(s) 18, 180
PsyI GACNNNGTC 1 cut(s) 448
RruI TCGCGA 1 cut(s) 216
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 3 cut(s) 18, 102, 180
SchI GAGTC 3 cut(s) 26, 128, 254
ScrFI CCNGG 2 cut(s) 361, 414
SetI ASST 8 cut(s) 75, 84, 102, 157, 165, 255, 399, 404
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 1 cut(s) 108
SsiI CCGC 9 cut(s) 57, 92, 169, 231, 328, 331, 375, 379, 440
StyD4I CCNGG 2 cut(s) 359, 412
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 8, 69, 237, 255
TasI AATT 1 cut(s) 108
TauI GCSGC 7 cut(s) 60, 95, 171, 333, 378, 381, 443
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 3 cut(s) 335, 381, 437
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 179
Tth111I GACNNNGTC 1 cut(s) 448
Vha464I CTTAAG 1 cut(s) 349
XapI RAATTY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.