MD01G1020300.v1.1

UBP1-associated protein 2A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001435
Physical Location & Seq
Forward (+)
8309754 .. 8312762
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1020300.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGCGAAAAAACGAAAGCTTAGCTCCTCCGAGCCCTCCGAACCCACCAAAAAGCAACAACAGGTCGTAGTTGAGGAACCCAAACCCCAAAACGAACCAGCAGAGGAAGTAGTCGAAGAGGAAGAAGAAGAAGTCGAAGAAGAGGAGGAGGAGGAAGATGAAGGAGCCGACGAAGACGAAGAGGAAGAGGAGGAGGACGAAGAGGGGCCAGGCGGTGAGTATAAGGAAACCGGTAACATAACCACGACGTCCGCCTCAGCCGCTTTGGATCAGGCCGGTGCAGGTGATGACGAGGACGAGCCGATCCAGAATCTTCTAGAACCATTCACCAAGGAACAGCTTATCTCCCTGCTCCTCGAAGCTGCCGATAACCACGGCGACGTGGCGGATCGGATCCGGAAGGTTGCGGATGAGGACCCAATCCACCGCAAGATCTTCGTCCATGGTCTCGGATGGGACACCAACGCCGAAACCCTAACCGGTGTGTTTAAGGAATACGGTGAGATTGAGGATTGCAAGGCTGTTTGCGATAAGGTCTCTGGTAAGTCCAAGGGTTACGGTTTCATTCTCTTCAAGACTCGTTCTGGGGCCCGAAAAGCCCTAAAGCAGCCCCAGAAGCAGATCGGTAATCGGATGACTGCATGCCAGCTGGCGGCGATTGGCCCTGGCCCGGCTCCTAACGCCGCTGCTGGACCTGTGGCAGCCCCGGCGGTTCAATCCCAGCCGATGTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAATGTTGGGGCGGACTTGGAGCCCCAGAAGCTTCTTATGTTCTTTTCTAGGTTTGGAGAAATTGAGGAAGGGCCACTAGGTCTTGATAAGTTGACCGGGAGGCCTAAAGGGTTTTGCTTGTTTGTGTACAAGTCGGCAGAGAGTGCCAAGAGGGCTCTGGAAGAGCCGCACAAGAATTTTGAGGGCCATATTTTGCATTGCCAGAAGGCCATTGACGGTCCAAAGCCGGGCAAGTCTCAGCACCAGAACCAGCACCACCACAAGTCACATAATTCCAAGTTTCAGAGGAATGAGAATTCAGGTTATGCAGGTGGAGCTGCATCAGGAATGGGCCATTTGATGGCACCTGCAAGTGGGGGGATTGGATTTAATCAGGGGGCTGCTGCAGCCCAGGCATTTAACCCAGCTATTGGGCAGGCACTGACTGCTTTGCTTGCAACACAGGGAGCTGGCTTGGGGCTGACAAACCTTTTGGGGACTTTTGGAACAGCTCCGAATGTGAACCCAGGTGTTCCTGGTGCAGGACATGTGATGCAGGGTGGATACGGGAATCAGGCAAGTATTAGTCCTGGGATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGGTGGCTATCCTAACCCGCAGTTAGGGCAAGGTGGTTCAGGAAGGGGGCAGCATGGCGCTGGGCAATCTGGTGGCGCTCCGTACATGGGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

489

Amino Acids

51.68

Weight (kDa)

5.0

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 145 - 210 2.1e-13 RNA recognition motif
RRM_1 PF00076 251 - 319 1e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 272, 1061, 1117
AatII GACGTC 1 cut(s) 251
Acc36I ACCTGC 3 cut(s) 272, 1061, 1117
AccB1I GGYRCC 1 cut(s) 1105
AccB7I CCANNNNNTGG 2 cut(s) 1102, 1172
AccIII TCCGGA 1 cut(s) 396
AclWI GGATC 5 cut(s) 276, 298, 388, 396, 401
AcsI RAATTY 2 cut(s) 937, 1057
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 3 cut(s) 737, 890, 1454
AfiI CCNNNNNNNGG 9 cut(s) 652, 670, 989, 1102, 1115, 1172, 1283, 1394, 1457
AflIII ACRYGT 1 cut(s) 1288
AgeI ACCGGT 2 cut(s) 230, 479
AgsI TTSAA 2 cut(s) 574, 716
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 6 cut(s) 208, 664, 1152, 1267, 1276, 1330
Alw26I GTCTC 3 cut(s) 452, 541, 1002
AlwI GGATC 5 cut(s) 276, 298, 388, 396, 401
AlwNI CAGNNNCTG 1 cut(s) 1183
Aor13HI TCCGGA 1 cut(s) 396
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 9 cut(s) 362, 607, 686, 701, 1079, 1142, 1145, 1148, 1420
ApoI RAATTY 2 cut(s) 937, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 1216, 1248
AsiGI ACCGGT 2 cut(s) 230, 479
AspLEI GCGC 2 cut(s) 1430, 1448
AsuC2I CCSGG 4 cut(s) 671, 707, 859, 990
AsuHPI GGTGA 4 cut(s) 227, 296, 319, 512
AvaII GGWCC 3 cut(s) 415, 692, 980
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 4 cut(s) 36, 592, 786, 919
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 256
BbvI GCAGC 9 cut(s) 349, 619, 673, 713, 1066, 1129, 1132, 1160, 1432
BccI CCATC 3 cut(s) 447, 1096, 1333
BceAI ACGGC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 6 cut(s) 210, 666, 1154, 1269, 1278, 1332
BciVI GTATCC 1 cut(s) 1298
BcnI CCSGG 4 cut(s) 671, 707, 859, 990
BcoDI GTCTC 3 cut(s) 452, 541, 1002
BfaI CTAG 3 cut(s) 317, 810, 839
BfmI CTRYAG 1 cut(s) 1146
BfoI RGCGCY 2 cut(s) 1431, 1449
BfuAI ACCTGC 3 cut(s) 272, 1061, 1117
BfuI GTATCC 1 cut(s) 1298
BglI GCCNNNNNGGC 1 cut(s) 914
BglII AGATCT 2 cut(s) 432, 750
BlpI GCTNAGC 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 415, 692, 980
BmgBI CACGTC 1 cut(s) 382
BmsI GCATC 2 cut(s) 1091, 1284
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 20
BpuMI CCSGG 4 cut(s) 671, 707, 859, 990
BsaAI YACGTR 1 cut(s) 757
BsaHI GRCGYC 1 cut(s) 248
BsaI GGTCTC 2 cut(s) 452, 541
BsaJI CCNNGG 9 cut(s) 330, 373, 442, 549, 664, 705, 1152, 1267, 1331
BsaWI WCCGGW 3 cut(s) 230, 396, 479
Bsc4I CCNNNNNNNGG 9 cut(s) 652, 670, 989, 1102, 1115, 1172, 1283, 1394, 1457
Bse118I RCCGGY 3 cut(s) 230, 275, 479
Bse3DI GCAATG 3 cut(s) 769, 958, 1371
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 6 cut(s) 210, 666, 1154, 1269, 1278, 1332
BseDI CCNNGG 9 cut(s) 330, 373, 442, 549, 664, 705, 1152, 1267, 1331
BseGI GGATG 4 cut(s) 415, 458, 639, 1341
BseLI CCNNNNNNNGG 9 cut(s) 652, 670, 989, 1102, 1115, 1172, 1283, 1394, 1457
BseMI GCAATG 3 cut(s) 769, 958, 1371
BseMII CTCAG 2 cut(s) 270, 1013
BseRI GAGGAG 7 cut(s) 16, 158, 161, 164, 203, 206, 344
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 9 cut(s) 349, 619, 673, 713, 1066, 1129, 1132, 1160, 1432
BseYI CCCAGC 3 cut(s) 720, 1165, 1430
BsgI GTGCAG 2 cut(s) 300, 1302
BshNI GGYRCC 1 cut(s) 1105
BshTI ACCGGT 2 cut(s) 230, 479
BsiSI CCGG 8 cut(s) 231, 276, 397, 480, 671, 707, 858, 989
BslFI GGGAC 2 cut(s) 470, 1252
BslI CCNNNNNNNGG 9 cut(s) 652, 670, 989, 1102, 1115, 1172, 1283, 1394, 1457
BsmAI GTCTC 3 cut(s) 452, 541, 1002
BsmFI GGGAC 2 cut(s) 470, 1252
Bso31I GGTCTC 2 cut(s) 452, 541
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 4 cut(s) 36, 592, 786, 919
Bsp13I TCCGGA 1 cut(s) 396
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
Bsp1720I GCTNAGC 1 cut(s) 20
Bsp19I CCATGG 1 cut(s) 442
BspCNI CTCAG 2 cut(s) 269, 1012
BspEI TCCGGA 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 1150
BspMI ACCTGC 3 cut(s) 272, 1061, 1117
BspPI GGATC 5 cut(s) 276, 298, 388, 396, 401
BspQI GCTCTTC 1 cut(s) 918
BspT107I GGYRCC 1 cut(s) 1105
BspTNI GGTCTC 2 cut(s) 452, 541
BsrDI GCAATG 3 cut(s) 769, 958, 1371
BsrFI RCCGGY 3 cut(s) 230, 275, 479
BsrGI TGTACA 1 cut(s) 888
BssAI RCCGGY 3 cut(s) 230, 275, 479
BssECI CCNNGG 9 cut(s) 330, 373, 442, 549, 664, 705, 1152, 1267, 1331
BssMI GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 3 cut(s) 330, 442, 549
Bst2UI CCWGG 6 cut(s) 210, 666, 1154, 1269, 1278, 1332
Bst4CI ACNGT 3 cut(s) 500, 560, 980
Bst6I CTCTTC 7 cut(s) 111, 135, 174, 180, 195, 575, 918
BstACI GRCGYC 1 cut(s) 248
BstAPI GCANNNNNTGC 2 cut(s) 905, 1187
BstAUI TGTACA 1 cut(s) 888
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 6 cut(s) 643, 647, 651, 1179, 1197, 1213
BstDEI CTNAG 3 cut(s) 20, 256, 999
BstDSI CCRYGG 2 cut(s) 373, 442
BstENI CCTNNNNNAGG 1 cut(s) 1281
BstF5I GGATG 4 cut(s) 415, 458, 639, 1341
BstH2I RGCGCY 2 cut(s) 1431, 1449
BstHHI GCGC 2 cut(s) 1430, 1448
BstKTI GATC 7 cut(s) 271, 306, 391, 396, 435, 624, 753
BstMAI GTCTC 3 cut(s) 452, 541, 1002
BstMBI GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
BstNI CCWGG 6 cut(s) 210, 666, 1154, 1269, 1278, 1332
BstNSI RCATGY 2 cut(s) 645, 1292
BstSFI CTRYAG 1 cut(s) 1146
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 9 cut(s) 349, 619, 673, 713, 1066, 1129, 1132, 1160, 1432
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 393, 432, 750
BstYI RGATCY 3 cut(s) 393, 432, 750
BsuI GTATCC 1 cut(s) 1298
BtgI CCRYGG 2 cut(s) 373, 442
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 4 cut(s) 415, 458, 639, 1341
BtsIMutI CAGTG 1 cut(s) 1181
BveI ACCTGC 3 cut(s) 272, 1061, 1117
Cac8I GCNNGC 6 cut(s) 643, 647, 651, 1179, 1197, 1213
CaiI CAGNNNCTG 1 cut(s) 1183
CfoI GCGC 2 cut(s) 1430, 1448
Cfr10I RCCGGY 3 cut(s) 230, 275, 479
Csp6I GTAC 3 cut(s) 736, 889, 1453
CspAI ACCGGT 2 cut(s) 230, 479
CviAII CATG 5 cut(s) 443, 642, 1289, 1424, 1456
CviQI GTAC 3 cut(s) 736, 889, 1453
DdeI CTNAG 3 cut(s) 20, 256, 999
DpnI GATC 7 cut(s) 270, 305, 390, 395, 434, 623, 752
DpnII GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
Eam1104I CTCTTC 7 cut(s) 111, 135, 174, 180, 195, 575, 918
EarI CTCTTC 7 cut(s) 111, 135, 174, 180, 195, 575, 918
EciI GGCGGA 3 cut(s) 241, 401, 788
Eco130I CCWWGG 3 cut(s) 330, 442, 549
Eco147I AGGCCT 1 cut(s) 865
Eco24I GRGCYC 4 cut(s) 36, 592, 786, 919
Eco31I GGTCTC 2 cut(s) 452, 541
Eco47I GGWCC 3 cut(s) 415, 692, 980
EcoNI CCTNNNNNAGG 1 cut(s) 1281
EcoO109I RGGNCCY 2 cut(s) 415, 588
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 6 cut(s) 208, 664, 1152, 1267, 1276, 1330
EcoT14I CCWWGG 3 cut(s) 330, 442, 549
EcoT38I GRGCYC 4 cut(s) 36, 592, 786, 919
ErhI CCWWGG 3 cut(s) 330, 442, 549
FaeI CATG 5 cut(s) 446, 645, 1292, 1427, 1459
FaqI GGGAC 2 cut(s) 470, 1252
FatI CATG 5 cut(s) 442, 641, 1288, 1423, 1455
FauI CCCGC 1 cut(s) 1395
FokI GGATG 4 cut(s) 422, 465, 646, 1348
FriOI GRGCYC 4 cut(s) 36, 592, 786, 919
FspBI CTAG 3 cut(s) 317, 810, 839
GlaI GCGC 2 cut(s) 1429, 1447
GsaI CCCAGC 3 cut(s) 724, 1169, 1434
HaeII RGCGCY 2 cut(s) 1431, 1449
HapII CCGG 8 cut(s) 231, 276, 397, 480, 671, 707, 858, 989
HhaI GCGC 2 cut(s) 1430, 1448
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 5 cut(s) 446, 645, 1292, 1427, 1459
Hin6I GCGC 2 cut(s) 1428, 1446
HinP1I GCGC 2 cut(s) 1428, 1446
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 2 cut(s) 17, 791
HinfI GANTC 3 cut(s) 310, 577, 1312
HpaII CCGG 8 cut(s) 231, 276, 397, 480, 671, 707, 858, 989
HphI GGTGA 4 cut(s) 227, 296, 319, 512
Hpy166II GTNNAC 4 cut(s) 738, 855, 889, 1264
Hpy188I TCNGA 8 cut(s) 31, 40, 393, 452, 633, 733, 1047, 1257
Hpy188III TCNNGA 8 cut(s) 307, 317, 397, 574, 845, 920, 1086, 1410
Hpy8I GTNNAC 4 cut(s) 738, 855, 889, 1264
Hpy99I CGWCG 3 cut(s) 173, 250, 383
HpyAV CCTTC 5 cut(s) 155, 394, 824, 961, 1407
HpyCH4III ACNGT 3 cut(s) 500, 560, 980
HpyCH4IV ACGT 3 cut(s) 248, 381, 756
HpyF3I CTNAG 3 cut(s) 20, 256, 999
HpySE526I ACGT 3 cut(s) 248, 381, 756
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 5 cut(s) 446, 645, 1292, 1427, 1459
HspAI GCGC 2 cut(s) 1428, 1446
Kpn2I TCCGGA 1 cut(s) 396
Kzo9I GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 9 cut(s) 29, 164, 357, 679, 781, 1076, 1208, 1258, 1453
Lsp1109I GCAGC 9 cut(s) 349, 619, 673, 713, 1066, 1129, 1132, 1160, 1432
LweI GCATC 2 cut(s) 1091, 1284
MaeI CTAG 3 cut(s) 317, 810, 839
MaeII ACGT 3 cut(s) 248, 381, 756
MaeIII GTNAC 3 cut(s) 233, 554, 1026
MalI GATC 7 cut(s) 270, 305, 390, 395, 434, 623, 752
MboI GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
MflI RGATCY 3 cut(s) 393, 432, 750
MhlI GDGCHC 4 cut(s) 36, 592, 786, 919
MluCI AATT 4 cut(s) 822, 937, 1033, 1057
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 711
MroI TCCGGA 1 cut(s) 396
MseI TTAA 3 cut(s) 489, 1131, 1161
MspA1I CMGCKG 2 cut(s) 649, 686
MspI CCGG 8 cut(s) 231, 276, 397, 480, 671, 707, 858, 989
MvaI CCWGG 6 cut(s) 210, 666, 1154, 1269, 1278, 1332
NciI CCSGG 4 cut(s) 671, 707, 859, 990
NcoI CCATGG 1 cut(s) 442
NdeII GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
NlaIII CATG 5 cut(s) 446, 645, 1292, 1427, 1459
NmuCI GTSAC 1 cut(s) 1026
NspI RCATGY 2 cut(s) 645, 1292
PaeI GCATGC 1 cut(s) 645
PaqCI CACCTGC 3 cut(s) 272, 1061, 1117
PceI AGGCCT 1 cut(s) 865
PciI ACATGT 1 cut(s) 1288
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 2 cut(s) 310, 1312
PflMI CCANNNNNTGG 2 cut(s) 1102, 1172
PinAI ACCGGT 2 cut(s) 230, 479
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 415
PscI ACATGT 1 cut(s) 1288
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 6 cut(s) 208, 664, 1152, 1267, 1276, 1330
PspFI CCCAGC 3 cut(s) 720, 1165, 1430
PspGI CCWGG 6 cut(s) 208, 664, 1152, 1267, 1276, 1330
PspOMI GGGCCC 1 cut(s) 588
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 1150
PstNI CAGNNNCTG 1 cut(s) 1183
PsuI RGATCY 3 cut(s) 393, 432, 750
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 3 cut(s) 737, 890, 1454
RsaNI GTAC 3 cut(s) 736, 889, 1453
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 3 cut(s) 489, 1131, 1161
Sau3AI GATC 7 cut(s) 268, 303, 388, 393, 432, 621, 750
SchI GAGTC 1 cut(s) 571
SduI GDGCHC 4 cut(s) 36, 592, 786, 919
SfaNI GCATC 2 cut(s) 1091, 1284
SfcI CTRYAG 1 cut(s) 1146
SinI GGWCC 3 cut(s) 415, 692, 980
SphI GCATGC 1 cut(s) 645
Sse9I AATT 4 cut(s) 822, 937, 1033, 1057
SseBI AGGCCT 1 cut(s) 865
SspMI CTAG 3 cut(s) 317, 810, 839
StuI AGGCCT 1 cut(s) 865
StyI CCWWGG 3 cut(s) 330, 442, 549
TaaI ACNGT 3 cut(s) 500, 560, 980
TaiI ACGT 3 cut(s) 251, 384, 759
TaqI TCGA 3 cut(s) 114, 135, 357
TasI AATT 4 cut(s) 822, 937, 1033, 1057
TatI WGTACW 2 cut(s) 735, 888
TauI GCSGC 4 cut(s) 263, 656, 686, 931
TfiI GAWTC 2 cut(s) 310, 1312
Tru1I TTAA 3 cut(s) 489, 1131, 1161
Tru9I TTAA 3 cut(s) 489, 1131, 1161
TscAI CASTG 1 cut(s) 1188
TseFI GTSAC 1 cut(s) 1026
TseI GCWGC 9 cut(s) 362, 607, 686, 701, 1079, 1142, 1145, 1148, 1420
Tsp45I GTSAC 1 cut(s) 1026
TspDTI ATGAA 2 cut(s) 174, 553
TspGWI ACGGA 1 cut(s) 1440
TspRI CASTG 1 cut(s) 1188
Van91I CCANNNNNTGG 2 cut(s) 1102, 1172
VpaK11BI GGWCC 3 cut(s) 415, 692, 980
XagI CCTNNNNNAGG 1 cut(s) 1281
XapI RAATTY 2 cut(s) 937, 1057
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 645, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XspI CTAG 3 cut(s) 317, 810, 839
ZraI GACGTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.