Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

19235374 .. 19239577

Gene Structure 4204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGATGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAGCACCATGTGGGTTTTCAGATTCTAAGAATGCTTCCGGGGATGCTCACGAACGCTCTGCTTCTATGCGGAAGCTTTGTATCGCCGTCGTGCTGTGTCTAGTGTTCATGAGTGTTGAAGTTGTTGGTGGGATTAAAGCCAATAGTTTAGCTATATTAACCGATGCAGCTCATTTGCTCTCTGACGTTGCTGCCTTTGCTATCTCCCTCTTCTCATTGTGGGCTGCTGGCTGGGAAGCGACTCCTAGGCAGACTTACGGGTTCTTCAGGATTGAGATTTTGGGTGCTCTTGTATCTATCCAGCTCATTTGGTTGCTCACGGGTATTCTGGTTTATGAAGCGATTATCAGAATTGTTACAGAGACCAGTGAGGTTAATGGATTCCTCATGTTTCTGGTTGCTGCCTTTGGTCTAGTGGTGAACATCATAATGGCTGTTCTGCTAGGGCATGATCATGGTCACAGTCATGGACATGGGCATGGCCACGGCCATGACCATCACAATCATAGCCATGGGGTGACTGTTACCACTCATCACCATCATCACGATCATGAACATGGCCATAGTCATGGTCATGGAGAGGACAAGCATCATGCTCATGGGGATGTTACTGAGCAATTGTTGGACAAATCGAAGACTCAAGTCGCAGCAAAAGAGAAAAGAAAGAGAAACATCAATCTCCAAGGAGCTTATCTGCATGTCCTTGGGGATTCCATCCAGAGTGTTGGTGTTATGATTGGAGGAGCTATCATTTGGTACAATCCGGAATGGAAGATAGTGGATCTGATCTGCACACTTGCCTTTTCGGTTATTGTCCTAGGAACAACCATCAACATGATTCGCAACATTCTAGAAGTATTGATGGAGAGTACACCCAGAGAGATTGACGCCACAAAGCTCGAAAAGGGTTTGCTCGAAATGGAAGAAGTGGTGGCTGTTCATGAGCTCCACATATGGGCTATCACAGTGGGAAAAGTGCTATTGGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGATATGGTGCTCAACAAGGTAATTGATTACATCCGCAGGGAGTACAACATTAGTCATGTCACGATACAAATCGAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

398

Amino Acids

43.83

Weight (kDa)

6.13

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	59 - 320	5.3e-42	Cation efflux transmembrane domain
ZT_dimer	PF16916	324 - 397	4.9e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	859
AciI	CCGC	2 cut(s)	166, 1150
AclWI	GGATC	1 cut(s)	885
AcoI	YGGCCR	3 cut(s)	577, 583, 655
AcuI	CTGAAG	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	984
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	854, 967, 1160
AfeI	AGCGCT	1 cut(s)	1193
AfiI	CCNNNNNNNGG	1 cut(s)	1051
AgsI	TTSAA	2 cut(s)	12, 215
AluBI	AGCT	8 cut(s)	172, 248, 266, 400, 785, 842, 994, 1042
AluI	AGCT	8 cut(s)	172, 248, 266, 400, 785, 842, 994, 1042
Alw21I	GWGCWC	3 cut(s)	385, 1044, 1128
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	885
Aor13HI	TCCGGA	1 cut(s)	859
Aor51HI	AGCGCT	1 cut(s)	1193
AoxI	GGCC	3 cut(s)	577, 583, 655
ApeKI	GCWGC	5 cut(s)	263, 287, 320, 497, 743
AspA2I	CCTAGG	2 cut(s)	341, 913
AspLEI	GCGC	1 cut(s)	1194
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	526, 623, 625
AvrII	CCTAGG	2 cut(s)	341, 913
BalI	TGGCCA	2 cut(s)	579, 657
BanII	GRGCYC	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	3 cut(s)	385, 1044, 1128
BbvI	GCAGC	5 cut(s)	274, 275, 307, 484, 755
BccI	CCATC	5 cut(s)	600, 642, 818, 932, 952
BceAI	ACGGC	2 cut(s)	167, 598
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	6 cut(s)	197, 342, 509, 539, 914, 947
BfoI	RGCGCY	1 cut(s)	1195
BisI	GCNGC	5 cut(s)	264, 288, 321, 498, 744
BlnI	CCTAGG	2 cut(s)	341, 913
BlsI	GCNGC	5 cut(s)	265, 289, 322, 499, 745
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	4 cut(s)	130, 250, 694, 1102
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	1184
BsaHI	GRCGYC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	7 cut(s)	135, 341, 580, 607, 778, 799, 913
BsaWI	WCCGGW	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	1 cut(s)	1051
Bse1I	ACTGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	1184
BseAI	TCCGGA	1 cut(s)	859
BseDI	CCNNGG	7 cut(s)	135, 341, 580, 607, 778, 799, 913
BseGI	GGATG	4 cut(s)	145, 706, 810, 1146
BseJI	GATNNNNATC	1 cut(s)	1184
BseLI	CCNNNNNNNGG	1 cut(s)	1051
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	5 cut(s)	274, 275, 307, 484, 755
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	871
BshFI	GGCC	3 cut(s)	579, 585, 657
BsiHKAI	GWGCWC	3 cut(s)	385, 1044, 1128
BsiSI	CCGG	2 cut(s)	135, 860
BslI	CCNNNNNNNGG	1 cut(s)	1051
BsmAI	GTCTC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	579, 585, 657
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	385, 1044, 1128
Bsp13I	TCCGGA	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	547, 643, 877, 882
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	2 cut(s)	166, 1150
BspANI	GGCC	3 cut(s)	579, 585, 657
BspCNI	CTCAG	1 cut(s)	700
BspEI	TCCGGA	1 cut(s)	859
BspHI	TCATGA	3 cut(s)	204, 646, 1036
BspPI	GGATC	1 cut(s)	885
BspTNI	GGTCTC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	7 cut(s)	135, 341, 580, 607, 778, 799, 913
BssMI	GATC	4 cut(s)	547, 643, 877, 882
BssNI	GRCGYC	1 cut(s)	984
BssT1I	CCWWGG	5 cut(s)	341, 607, 778, 799, 913
Bst4CI	ACNGT	3 cut(s)	560, 619, 1063
Bst6I	CTCTTC	2 cut(s)	57, 311
BstACI	GRCGYC	1 cut(s)	984
BstC8I	GCNNGC	2 cut(s)	325, 1084
BstDEI	CTNAG	2 cut(s)	123, 708
BstDSI	CCRYGG	2 cut(s)	580, 607
BstF5I	GGATG	4 cut(s)	145, 706, 810, 1146
BstH2I	RGCGCY	1 cut(s)	1195
BstHHI	GCGC	1 cut(s)	1194
BstKTI	GATC	4 cut(s)	550, 646, 880, 885
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	547, 643, 877, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	797
BstPAI	GACNNNNGTC	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	5 cut(s)	274, 275, 307, 484, 755
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	877
BstXI	CCANNNNNNTGG	2 cut(s)	665, 821
BstYI	RGATCY	1 cut(s)	877
BsuRI	GGCC	3 cut(s)	579, 585, 657
BtgI	CCRYGG	2 cut(s)	580, 607
BtsCI	GGATG	4 cut(s)	145, 706, 810, 1146
BtsIMutI	CAGTG	2 cut(s)	469, 1068
Cac8I	GCNNGC	2 cut(s)	325, 1084
CciI	TCATGA	3 cut(s)	204, 646, 1036
CfoI	GCGC	1 cut(s)	1194
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	3 cut(s)	853, 966, 1159
CviQI	GTAC	3 cut(s)	853, 966, 1159
DdeI	CTNAG	2 cut(s)	123, 708
DpnI	GATC	4 cut(s)	549, 645, 879, 884
DpnII	GATC	4 cut(s)	547, 643, 877, 882
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	577, 583, 655
Eam1104I	CTCTTC	2 cut(s)	57, 311
EarI	CTCTTC	2 cut(s)	57, 311
Ecl136II	GAGCTC	1 cut(s)	1042
Eco130I	CCWWGG	5 cut(s)	341, 607, 778, 799, 913
Eco24I	GRGCYC	1 cut(s)	1044
Eco31I	GGTCTC	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	1193
Eco53kI	GAGCTC	1 cut(s)	1042
Eco57I	CTGAAG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	1042
EcoT14I	CCWWGG	5 cut(s)	341, 607, 778, 799, 913
EcoT38I	GRGCYC	1 cut(s)	1044
ErhI	CCWWGG	5 cut(s)	341, 607, 778, 799, 913
FauNDI	CATATG	1 cut(s)	1049
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	264, 288, 321, 498, 744
FokI	GGATG	4 cut(s)	152, 713, 797, 1133
FriOI	GRGCYC	1 cut(s)	1044
Fsp4HI	GCNGC	5 cut(s)	264, 288, 321, 498, 744
FspBI	CTAG	6 cut(s)	197, 342, 509, 539, 914, 947
GlaI	GCGC	1 cut(s)	1193
GluI	GCNGC	5 cut(s)	264, 288, 321, 498, 744
GsaI	CCCAGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	1195
HaeIII	GGCC	3 cut(s)	579, 585, 657
HapII	CCGG	2 cut(s)	135, 860
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	1 cut(s)	1194
Hin1I	GRCGYC	1 cut(s)	984
Hin6I	GCGC	1 cut(s)	1192
HinP1I	GCGC	1 cut(s)	1192
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	7 cut(s)	5, 119, 337, 477, 733, 806, 934
HpaII	CCGG	2 cut(s)	135, 860
HphI	GGTGA	3 cut(s)	526, 623, 625
Hpy166II	GTNNAC	2 cut(s)	517, 968
Hpy188I	TCNGA	6 cut(s)	58, 118, 280, 446, 882, 1100
Hpy8I	GTNNAC	2 cut(s)	517, 968
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	560, 619, 1063
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	263, 793, 888, 1115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	123, 708
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	984
HspAI	GCGC	1 cut(s)	1192
Kpn2I	TCCGGA	1 cut(s)	859
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	547, 643, 877, 882
LmnI	GCTCC	3 cut(s)	782, 839, 1047
Lsp1109I	GCAGC	5 cut(s)	274, 275, 307, 484, 755
LweI	GCATC	4 cut(s)	130, 250, 694, 1102
MaeI	CTAG	6 cut(s)	197, 342, 509, 539, 914, 947
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	7 cut(s)	26, 451, 554, 613, 619, 703, 1174
MalI	GATC	4 cut(s)	549, 645, 879, 884
MboI	GATC	4 cut(s)	547, 643, 877, 882
MboII	GAAGA	6 cut(s)	74, 298, 352, 742, 880, 1031
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	385, 1044, 1128
MlsI	TGGCCA	2 cut(s)	579, 657
MluCI	AATT	4 cut(s)	72, 447, 713, 1137
MluNI	TGGCCA	2 cut(s)	579, 657
MlyI	GAGTC	3 cut(s)	14, 331, 727
MmeI	TCCRAC	2 cut(s)	28, 699
MnlI	CCTC	6 cut(s)	31, 314, 460, 491, 670, 830
Mox20I	TGGCCA	2 cut(s)	579, 657
MroI	TCCGGA	1 cut(s)	859
MscI	TGGCCA	2 cut(s)	579, 657
MseI	TTAA	4 cut(s)	42, 231, 254, 471
Msp20I	TGGCCA	2 cut(s)	579, 657
MspI	CCGG	2 cut(s)	135, 860
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	1049
NdeII	GATC	4 cut(s)	547, 643, 877, 882
NmuCI	GTSAC	4 cut(s)	26, 554, 613, 1174
NspI	RCATGY	1 cut(s)	797
PagI	TCATGA	3 cut(s)	204, 646, 1036
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	4 cut(s)	119, 477, 806, 934
PkrI	GCNGC	5 cut(s)	265, 289, 322, 499, 745
PleI	GAGTC	3 cut(s)	13, 331, 727
PpsI	GAGTC	3 cut(s)	13, 331, 727
PshAI	GACNNNNGTC	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	1044
PspFI	CCCAGC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	3 cut(s)	854, 967, 1160
RsaNI	GTAC	3 cut(s)	853, 966, 1159
SacI	GAGCTC	1 cut(s)	1044
SaqAI	TTAA	4 cut(s)	42, 231, 254, 471
SatI	GCNGC	5 cut(s)	264, 288, 321, 498, 744
Sau3AI	GATC	4 cut(s)	547, 643, 877, 882
SchI	GAGTC	3 cut(s)	14, 331, 727
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	385, 1044, 1128
SfaNI	GCATC	4 cut(s)	130, 250, 694, 1102
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	4 cut(s)	72, 447, 713, 1137
SsiI	CCGC	2 cut(s)	166, 1150
SspMI	CTAG	6 cut(s)	197, 342, 509, 539, 914, 947
SstI	GAGCTC	1 cut(s)	1044
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	5 cut(s)	341, 607, 778, 799, 913
TaaI	ACNGT	3 cut(s)	560, 619, 1063
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	728, 996, 1011, 1188
TasI	AATT	4 cut(s)	72, 447, 713, 1137
TatI	WGTACW	2 cut(s)	965, 1158
TfiI	GAWTC	4 cut(s)	119, 477, 806, 934
Tru1I	TTAA	4 cut(s)	42, 231, 254, 471
Tru9I	TTAA	4 cut(s)	42, 231, 254, 471
TscAI	CASTG	2 cut(s)	469, 1068
TseFI	GTSAC	4 cut(s)	26, 554, 613, 1174
TseI	GCWGC	5 cut(s)	263, 287, 320, 497, 743
Tsp45I	GTSAC	4 cut(s)	26, 554, 613, 1174
TspDTI	ATGAA	5 cut(s)	75, 193, 447, 663, 1025
TspRI	CASTG	2 cut(s)	469, 1068
XbaI	TCTAGA	1 cut(s)	946
XceI	RCATGY	1 cut(s)	797
XmaJI	CCTAGG	2 cut(s)	341, 913
XspI	CTAG	6 cut(s)	197, 342, 509, 539, 914, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.