Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007111.1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

28135 .. 29397

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007111.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggaatcagagaatacacaacattcccagattatcgagatccatggaggtgctcctggtgaagagacgagtgtgggtgggagtaaaatttgtggggaagcaccatgtggactgtcggatgttggaccaaattctaaagattccaaagaacgatcagctgccatgcgcaagctcttgatagcagtggtactctgtgttctcttcatgagtgttgaagtgtttggtggcattgaagccaatagcttagcaatattgactgatgcagcacatttgctctctgatgttgcagcctttgccatctccttgttctccttgtgggctgctagctgggaaaccactcctcgtcagtcttacggctttttcaggattgagattctcggtgctttggtttctatccaactcatatggttgcttgctgggatattggtgtatgaagccattgttagaatgattaataacacatctgatgtgaatggttttctgatgtttcttgttgctgcatttggtctagtggttaatattggcatggctgtactgttaggccatgatcatggtcatgatcatggccacggccatggacatggtcatggccacggccatggacatgatgatcatgatcatcacagccatggaatgacattttctactcatcatcaccatcgccatgaggaacactcgaatgacgagcaccatcatgatcatgaagaacactcgcatgatgaacaccatcacagtcatgatgatcataaacacaatggtgctgatgaaggtcatgctcatgagccactcttggacaagccaaaagacgggcatggccagaagaagcaacggaacataaacgtgcagggagcttaccttcatgttcttggggacttggttcaaagtatcggtgtaatgattggtggggccatcatatggtacaagccggaatggaagatagttgatttgatttgcaccctaatattttctgttattgttttggggacaactttcaagatgataaggaacatacttgatgtactaatggagagcacaccaagggagattgatgcaacgaaacttgagaaggggctattggagatgggagaagtggtggaaatccatgagctgcatatatgggcaatcacagttgggaaagtcctgctggcttgccatgtgaaaatcagacctgaagcaaatgcagacatggtgctgggcaaagtgattgattatatcagaagggagtacaacatcagccatgtgactatacaagttgagcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

420

Amino Acids

46.49

Weight (kDa)

5.91

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	915
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	5 cut(s)	565, 571, 589, 595, 814
AcsI	RAATTY	2 cut(s)	87, 130
AcuI	CTGAAG	1 cut(s)	1191
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	189, 534, 920, 1020, 1226
AfiI	CCNNNNNNNGG	2 cut(s)	806, 915
AgsI	TTSAA	4 cut(s)	215, 233, 881, 994
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1058, 1090
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	6 cut(s)	158, 172, 243, 327, 851, 1108
AluI	AGCT	6 cut(s)	158, 172, 243, 327, 851, 1108
Alw21I	GWGCWC	3 cut(s)	55, 690, 1034
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	7 cut(s)	541, 565, 571, 589, 595, 814, 906
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1108
ApoI	RAATTY	2 cut(s)	87, 130
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 906
AsuHPI	GGTGA	2 cut(s)	71, 647
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	3 cut(s)	567, 591, 816
Bbv12I	GWGCWC	3 cut(s)	55, 690, 1034
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1095
BccI	CCATC	6 cut(s)	305, 666, 699, 735, 917, 1075
BceAI	ACGGC	3 cut(s)	370, 586, 610
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	6 cut(s)	547, 559, 610, 616, 697, 742
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	324, 509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1109
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1110
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 906
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	250, 1039
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1082
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1037
BsaXI	ACNNNNNCTCC	2 cut(s)	1077, 1107
Bsc4I	CCNNNNNNNGG	2 cut(s)	806, 915
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1037
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	806, 915
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1095
BseYI	CCCAGC	3 cut(s)	327, 416, 1192
BsgI	GTGCAG	1 cut(s)	863
BshFI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 816, 908
BsiHKAI	GWGCWC	3 cut(s)	55, 690, 1034
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	2 cut(s)	884, 997
BslI	CCNNNNNNNGG	2 cut(s)	806, 915
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	884, 997
BsnI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 816, 908
Bsp1286I	GDGCHC	3 cut(s)	55, 690, 1034
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	4 cut(s)	43, 574, 598, 628
BspANI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 816, 908
BspHI	TCATGA	7 cut(s)	204, 556, 613, 694, 700, 736, 778
BspLI	GGNNCC	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1037
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
BssT1I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1037
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	114, 537, 734, 1129
Bst6I	CTCTTC	2 cut(s)	57, 206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1146, 1150
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 613, 619, 700, 745
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1095
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	4 cut(s)	551, 575, 581, 599
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 816, 908
BtgI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BtgZI	GCGATG	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1146, 1150
CciI	TCATGA	7 cut(s)	204, 556, 613, 694, 700, 736, 778
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 906
Csp6I	GTAC	5 cut(s)	188, 533, 919, 1019, 1225
CviQI	GTAC	5 cut(s)	188, 533, 919, 1019, 1225
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 699, 744
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	5 cut(s)	565, 571, 589, 595, 814
Eam1104I	CTCTTC	2 cut(s)	57, 206
EarI	CTCTTC	2 cut(s)	57, 206
Eco130I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1037
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1191
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1037
ErhI	CCWWGG	5 cut(s)	43, 574, 598, 628, 1037
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	884, 997
FauNDI	CATATG	2 cut(s)	404, 914
FbaI	TGATCA	6 cut(s)	547, 559, 610, 616, 697, 742
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1109
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1109
FspBI	CTAG	2 cut(s)	324, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1109
GsaI	CCCAGC	3 cut(s)	331, 420, 1196
HaeIII	GGCC	7 cut(s)	543, 567, 573, 591, 597, 816, 908
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	2 cut(s)	71, 647
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1166, 1217
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	761, 866, 1060, 1212
HpyCH4III	ACNGT	4 cut(s)	114, 537, 734, 1129
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 844, 954, 1052, 1111, 1181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	840
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 610, 616, 697, 742
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
LmnI	GCTCC	2 cut(s)	58, 848
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1095
LweI	GCATC	2 cut(s)	250, 1039
MaeI	CTAG	2 cut(s)	324, 509
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	1 cut(s)	1240
MalI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 699, 744
MboI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
MboII	GAAGA	5 cut(s)	74, 193, 716, 832, 946
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	55, 690, 1034
MlsI	TGGCCA	3 cut(s)	567, 591, 816
MluCI	AATT	2 cut(s)	87, 130
MluNI	TGGCCA	3 cut(s)	567, 591, 816
MmeI	TCCRAC	3 cut(s)	96, 103, 421
MnlI	CCTC	3 cut(s)	41, 351, 661
Mox20I	TGGCCA	3 cut(s)	567, 591, 816
MscI	TGGCCA	3 cut(s)	567, 591, 816
MseI	TTAA	3 cut(s)	453, 516, 1261
Msp20I	TGGCCA	3 cut(s)	567, 591, 816
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	43, 574, 598, 628
NdeI	CATATG	2 cut(s)	404, 914
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
NheI	GCTAGC	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	1240
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	756
PagI	TCATGA	7 cut(s)	204, 556, 613, 694, 700, 736, 778
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflFI	GACNNNGTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	915
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1110
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	3 cut(s)	327, 416, 1192
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	2 cut(s)	125, 906
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	5 cut(s)	189, 534, 920, 1020, 1226
RsaNI	GTAC	5 cut(s)	188, 533, 919, 1019, 1225
SaqAI	TTAA	3 cut(s)	453, 516, 1261
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1109
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 697, 742
Sau96I	GGNCC	2 cut(s)	125, 906
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	55, 690, 1034
SfaNI	GCATC	2 cut(s)	250, 1039
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	2 cut(s)	87, 130
SspI	AATATT	3 cut(s)	252, 520, 963
SspMI	CTAG	2 cut(s)	324, 509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	5 cut(s)	43, 574, 598, 628, 1037
TaaI	ACNGT	4 cut(s)	114, 537, 734, 1129
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	2 cut(s)	36, 677
TasI	AATT	2 cut(s)	87, 130
TatI	WGTACW	3 cut(s)	532, 1018, 1224
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1261
Tru9I	TTAA	3 cut(s)	453, 516, 1261
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1108
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	6 cut(s)	193, 447, 717, 735, 780, 848
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	2 cut(s)	87, 130
XspI	CTAG	2 cut(s)	324, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.