Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

14682281 .. 14685571

Gene Structure 3291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCATCACAGAATACACAACATTCCCAGATTATCGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCAAATTCTAAAGGTTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCCTAGCAATATTGACTGATGCAGCACATTTGCTCTCAGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCAGGCTGGGAAACCACTCCCCGTCAGTCTTATGGCTTTTTCAGGATTGAGATTCTTGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGACGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGGTCATGGCCACGGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCATCACCATGAGGAGCACTTGAATGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACGAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

413

Amino Acids

45.69

Weight (kDa)

5.85

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 334	4.3e-35	Cation efflux transmembrane domain
ZT_dimer	PF16916	338 - 411	9.2e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	891
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	3 cut(s)	565, 571, 790
AcsI	RAATTY	2 cut(s)	87, 130
AcuI	CTGAAG	1 cut(s)	1167
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	189, 534, 896, 996, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	782, 891
AgsI	TTSAA	5 cut(s)	215, 233, 655, 857, 970
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1034, 1066
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	4 cut(s)	158, 172, 827, 1084
AluI	AGCT	4 cut(s)	158, 172, 827, 1084
Alw21I	GWGCWC	3 cut(s)	651, 666, 1010
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	5 cut(s)	541, 565, 571, 790, 882
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1084
ApoI	RAATTY	2 cut(s)	87, 130
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 882
AsuHPI	GGTGA	3 cut(s)	71, 623, 629
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	567, 792
Bbv12I	GWGCWC	3 cut(s)	651, 666, 1010
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1071
BccI	CCATC	6 cut(s)	305, 642, 675, 711, 893, 1051
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	5 cut(s)	547, 586, 592, 673, 718
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	245, 509
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1085
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1086
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	125, 882
BmiI	GGNNCC	2 cut(s)	142, 883
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	4 cut(s)	14, 40, 250, 1015
BpuEI	CTTGAG	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	5 cut(s)	43, 568, 574, 604, 1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 891
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	5 cut(s)	43, 568, 574, 604, 1013
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	782, 891
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1071
BseYI	CCCAGC	2 cut(s)	327, 416
BsgI	GTGCAG	1 cut(s)	839
BshFI	GGCC	5 cut(s)	543, 567, 573, 792, 884
BsiHKAI	GWGCWC	3 cut(s)	651, 666, 1010
BsiSI	CCGG	1 cut(s)	902
BslFI	GGGAC	2 cut(s)	860, 973
BslI	CCNNNNNNNGG	2 cut(s)	782, 891
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	860, 973
BsnI	GGCC	5 cut(s)	543, 567, 573, 792, 884
Bsp1286I	GDGCHC	3 cut(s)	651, 666, 1010
Bsp143I	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
Bsp19I	CCATGG	3 cut(s)	43, 574, 604
BspANI	GGCC	5 cut(s)	543, 567, 573, 792, 884
BspCNI	CTCAG	1 cut(s)	290
BspHI	TCATGA	5 cut(s)	589, 670, 676, 712, 754
BspLI	GGNNCC	2 cut(s)	142, 883
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	5 cut(s)	43, 568, 574, 604, 1013
BssMI	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
BssT1I	CCWWGG	4 cut(s)	43, 574, 604, 1013
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	105, 114, 537, 710, 1105
Bst6I	CTCTTC	2 cut(s)	57, 206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1122, 1126
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	4 cut(s)	43, 568, 574, 604
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	7 cut(s)	42, 155, 550, 589, 595, 676, 721
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1071
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	2 cut(s)	551, 575
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	543, 567, 573, 792, 884
BtgI	CCRYGG	4 cut(s)	43, 568, 574, 604
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1122, 1126
CciI	TCATGA	5 cut(s)	589, 670, 676, 712, 754
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 882
Csp6I	GTAC	5 cut(s)	188, 533, 895, 995, 1201
CviQI	GTAC	5 cut(s)	188, 533, 895, 995, 1201
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	7 cut(s)	41, 154, 549, 588, 594, 675, 720
DpnII	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	565, 571, 790
Eam1104I	CTCTTC	2 cut(s)	57, 206
EarI	CTCTTC	2 cut(s)	57, 206
Eco130I	CCWWGG	4 cut(s)	43, 574, 604, 1013
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1167
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 574, 604, 1013
ErhI	CCWWGG	4 cut(s)	43, 574, 604, 1013
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	860, 973
FauNDI	CATATG	2 cut(s)	404, 890
FbaI	TGATCA	5 cut(s)	547, 586, 592, 673, 718
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1085
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1085
FspBI	CTAG	2 cut(s)	245, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1085
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	5 cut(s)	543, 567, 573, 792, 884
HapII	CCGG	1 cut(s)	902
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	3 cut(s)	71, 623, 629
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	6 cut(s)	118, 280, 466, 483, 1142, 1193
Hpy188III	TCNNGA	9 cut(s)	37, 175, 364, 590, 671, 677, 713, 755, 970
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	737, 842, 1036, 1188
HpyCH4III	ACNGT	5 cut(s)	105, 114, 537, 710, 1105
HpyCH4IV	ACGT	2 cut(s)	468, 816
HpyCH4V	TGCA	9 cut(s)	263, 287, 323, 500, 820, 930, 1028, 1087, 1157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	468, 816
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	5 cut(s)	547, 586, 592, 673, 718
Kzo9I	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
LmnI	GCTCC	3 cut(s)	58, 646, 824
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1071
LweI	GCATC	4 cut(s)	14, 40, 250, 1015
MaeI	CTAG	2 cut(s)	245, 509
MaeII	ACGT	2 cut(s)	468, 816
MaeIII	GTNAC	1 cut(s)	1216
MalI	GATC	7 cut(s)	41, 154, 549, 588, 594, 675, 720
MboI	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
MboII	GAAGA	6 cut(s)	74, 193, 692, 808, 922, 1073
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	651, 666, 1010
MlsI	TGGCCA	2 cut(s)	567, 792
MluCI	AATT	2 cut(s)	87, 130
MluNI	TGGCCA	2 cut(s)	567, 792
MmeI	TCCRAC	4 cut(s)	96, 103, 421, 1032
MnlI	CCTC	2 cut(s)	637, 972
Mox20I	TGGCCA	2 cut(s)	567, 792
MscI	TGGCCA	2 cut(s)	567, 792
MseI	TTAA	3 cut(s)	453, 516, 1237
Msp20I	TGGCCA	2 cut(s)	567, 792
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	3 cut(s)	43, 574, 604
NdeI	CATATG	2 cut(s)	404, 890
NdeII	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
NlaIV	GGNNCC	2 cut(s)	142, 883
NmuCI	GTSAC	1 cut(s)	1216
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	732
PagI	TCATGA	5 cut(s)	589, 670, 676, 712, 754
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	891
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1086
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	142, 883
PspPI	GGNCC	2 cut(s)	125, 882
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	5 cut(s)	189, 534, 896, 996, 1202
RsaNI	GTAC	5 cut(s)	188, 533, 895, 995, 1201
SaqAI	TTAA	3 cut(s)	453, 516, 1237
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1085
Sau3AI	GATC	7 cut(s)	39, 152, 547, 586, 592, 673, 718
Sau96I	GGNCC	2 cut(s)	125, 882
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	651, 666, 1010
SfaNI	GCATC	4 cut(s)	14, 40, 250, 1015
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	2 cut(s)	87, 130
SspI	AATATT	3 cut(s)	252, 520, 939
SspMI	CTAG	2 cut(s)	245, 509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 574, 604, 1013
TaaI	ACNGT	5 cut(s)	105, 114, 537, 710, 1105
TaiI	ACGT	2 cut(s)	471, 819
TaqI	TCGA	2 cut(s)	36, 990
TasI	AATT	2 cut(s)	87, 130
TatI	WGTACW	3 cut(s)	532, 994, 1200
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	453, 516, 1237
Tru9I	TTAA	3 cut(s)	453, 516, 1237
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1216
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1084
Tsp45I	GTSAC	1 cut(s)	1216
TspDTI	ATGAA	6 cut(s)	193, 447, 693, 711, 756, 824
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	891
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	2 cut(s)	87, 130
XspI	CTAG	2 cut(s)	245, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.