Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

15339413 .. 15343291

Gene Structure 3879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGCATTAGATCTCTGTCCGACGACAAAACCATGACGACGGTGTGGCGGAGGCCGCCCTACTTCCGCCGCCGCCGAACGAGAACGAGATTGCAAACCGAGGGTCTTAGGATGGAATCAGAGAATACAAAACATTCCCAGATTATCGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCGTGTGGACTGTCAGATGTTGGACCAAATTCTAAAGGTTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGAGGTGAATGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACTGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

349

Amino Acids

39.06

Weight (kDa)

6.53

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	95 - 195	4.2e-21	Cation efflux transmembrane domain
Cation_efflux	PF01545	213 - 271	8.9e-09	Cation efflux transmembrane domain
ZT_dimer	PF16916	275 - 348	7e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	702
AciI	CCGC	5 cut(s)	49, 56, 67, 70, 73
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	602
AcsI	RAATTY	2 cut(s)	198, 241
AcuI	CTGAAG	1 cut(s)	978
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	300, 707, 807, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	594, 702
AgsI	TTSAA	4 cut(s)	326, 344, 668, 781
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AluBI	AGCT	5 cut(s)	269, 283, 354, 638, 895
AluI	AGCT	5 cut(s)	269, 283, 354, 638, 895
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	3 cut(s)	53, 602, 693
ApeKI	GCWGC	5 cut(s)	269, 374, 398, 431, 895
ApoI	RAATTY	2 cut(s)	198, 241
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	236, 693
AsuHPI	GGTGA	2 cut(s)	182, 592
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	5 cut(s)	256, 386, 410, 418, 882
BccI	CCATC	4 cut(s)	106, 416, 704, 862
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	8 cut(s)	56, 70, 73, 270, 375, 399, 432, 896
BlpI	GCTNAGC	1 cut(s)	355
BlsI	GCNGC	8 cut(s)	57, 71, 74, 271, 376, 400, 433, 897
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	236, 693
BmiI	GGNNCC	2 cut(s)	253, 694
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	151, 361, 826
Bpu1102I	GCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	869
BsaJI	CCNNGG	2 cut(s)	99, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 702
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	99, 154
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	594, 702
BseMII	CTCAG	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	256, 386, 410, 418, 882
BseYI	CCCAGC	2 cut(s)	438, 527
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	55, 604, 695
BsiHKAI	GWGCWC	1 cut(s)	821
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	2 cut(s)	671, 784
BslI	CCNNNNNNNGG	2 cut(s)	594, 702
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	671, 784
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	55, 604, 695
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	3 cut(s)	11, 150, 263
Bsp1720I	GCTNAGC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	5 cut(s)	49, 56, 67, 70, 73
BspANI	GGCC	3 cut(s)	55, 604, 695
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	253, 694
BspPI	GGATC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	99, 154
BssMI	GATC	3 cut(s)	11, 150, 263
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	43, 216, 225, 916
Bst6I	CTCTTC	2 cut(s)	168, 317
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	5 cut(s)	281, 436, 525, 933, 937
BstDEI	CTNAG	3 cut(s)	107, 355, 576
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	14, 153, 266
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	11, 150, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 404
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	5 cut(s)	256, 386, 410, 418, 882
BstX2I	RGATCY	2 cut(s)	11, 150
BstYI	RGATCY	2 cut(s)	11, 150
BsuRI	GGCC	3 cut(s)	55, 604, 695
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 912
Cac8I	GCNNGC	5 cut(s)	281, 436, 525, 933, 937
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	236, 693
Csp6I	GTAC	4 cut(s)	299, 706, 806, 1012
CviQI	GTAC	4 cut(s)	299, 706, 806, 1012
DdeI	CTNAG	3 cut(s)	107, 355, 576
DpnI	GATC	3 cut(s)	13, 152, 265
DpnII	GATC	3 cut(s)	11, 150, 263
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	602
Eam1104I	CTCTTC	2 cut(s)	168, 317
EarI	CTCTTC	2 cut(s)	168, 317
EciI	GGCGGA	2 cut(s)	56, 64
Eco130I	CCWWGG	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	978
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	170
FaqI	GGGAC	2 cut(s)	671, 784
FauNDI	CATATG	2 cut(s)	515, 701
Fnu4HI	GCNGC	8 cut(s)	56, 70, 73, 270, 375, 399, 432, 896
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	8 cut(s)	56, 70, 73, 270, 375, 399, 432, 896
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	8 cut(s)	56, 70, 73, 270, 375, 399, 432, 896
GsaI	CCCAGC	2 cut(s)	442, 531
HaeIII	GGCC	3 cut(s)	55, 604, 695
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	116, 484
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	182, 592
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	7 cut(s)	22, 121, 229, 391, 577, 953, 1004
Hpy188III	TCNNGA	4 cut(s)	148, 286, 475, 781
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	2 cut(s)	26, 43
HpyAV	CCTTC	3 cut(s)	653, 847, 999
HpyCH4III	ACNGT	4 cut(s)	43, 216, 225, 916
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	8 cut(s)	94, 374, 398, 632, 741, 839, 898, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 404
HpyF3I	CTNAG	3 cut(s)	107, 355, 576
HpySE526I	ACGT	1 cut(s)	628
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	11, 150, 263
LmnI	GCTCC	2 cut(s)	169, 635
Lsp1109I	GCAGC	5 cut(s)	256, 386, 410, 418, 882
LweI	GCATC	3 cut(s)	151, 361, 826
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	1027
MalI	GATC	3 cut(s)	13, 152, 265
MboI	GATC	3 cut(s)	11, 150, 263
MboII	GAAGA	5 cut(s)	185, 304, 620, 733, 884
MflI	RGATCY	2 cut(s)	11, 150
MhlI	GDGCHC	1 cut(s)	821
MlsI	TGGCCA	1 cut(s)	604
MluCI	AATT	2 cut(s)	198, 241
MluNI	TGGCCA	1 cut(s)	604
MmeI	TCCRAC	4 cut(s)	45, 214, 532, 843
MnlI	CCTC	4 cut(s)	45, 94, 571, 783
Mox20I	TGGCCA	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	604
MseI	TTAA	2 cut(s)	564, 1048
MslI	CAYNNNNRTG	2 cut(s)	159, 627
Msp20I	TGGCCA	1 cut(s)	604
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	55, 404
NcoI	CCATGG	1 cut(s)	154
NdeI	CATATG	2 cut(s)	515, 701
NdeII	GATC	3 cut(s)	11, 150, 263
NlaIV	GGNNCC	2 cut(s)	253, 694
NmuCI	GTSAC	1 cut(s)	1027
NsbI	TGCGCA	1 cut(s)	278
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	116, 484
PflMI	CCANNNNNTGG	1 cut(s)	702
PkrI	GCNGC	8 cut(s)	57, 71, 74, 271, 376, 400, 433, 897
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	2 cut(s)	438, 527
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	253, 694
PspPI	GGNCC	2 cut(s)	236, 693
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PsuI	RGATCY	2 cut(s)	11, 150
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	4 cut(s)	300, 707, 807, 1013
RsaNI	GTAC	4 cut(s)	299, 706, 806, 1012
RseI	CAYNNNNRTG	2 cut(s)	159, 627
SaqAI	TTAA	2 cut(s)	564, 1048
SatI	GCNGC	8 cut(s)	56, 70, 73, 270, 375, 399, 432, 896
Sau3AI	GATC	3 cut(s)	11, 150, 263
Sau96I	GGNCC	2 cut(s)	236, 693
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	3 cut(s)	151, 361, 826
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	159, 627
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	2 cut(s)	198, 241
SsiI	CCGC	5 cut(s)	49, 56, 67, 70, 73
SspI	AATATT	2 cut(s)	363, 750
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	43, 216, 225, 916
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	2 cut(s)	147, 801
TasI	AATT	2 cut(s)	198, 241
TatI	WGTACW	2 cut(s)	805, 1011
TauI	GCSGC	3 cut(s)	58, 72, 75
TfiI	GAWTC	2 cut(s)	116, 484
Tru1I	TTAA	2 cut(s)	564, 1048
Tru9I	TTAA	2 cut(s)	564, 1048
TscAI	CASTG	2 cut(s)	300, 919
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	5 cut(s)	269, 374, 398, 431, 895
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	3 cut(s)	304, 558, 635
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	300, 919
Van91I	CCANNNNNTGG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	2 cut(s)	198, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.