Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

14667066 .. 14669844

Gene Structure 2779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCTTCAGCTGAGTTTGGTTGTACTTGGGGAAGAAGAAAGTACCATAAAGATGGAATCAGAGAATACACAACATTCCCAGATTATTGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCAAATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAATCTTACGGCTTTTTCAGGATTGAAATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTGATAACACATCTGACGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGGTCATGGCCACAGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCATCACCATGAGGAGCACTCGAATGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCATAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGATGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCCATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

430

Amino Acids

47.7

Weight (kDa)

5.7

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	75 - 351	1.5e-34	Cation efflux transmembrane domain
ZT_dimer	PF16916	355 - 428	9.8e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	218
AccB7I	CCANNNNNTGG	2 cut(s)	833, 942
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	2 cut(s)	616, 841
AcsI	RAATTY	3 cut(s)	138, 181, 423
AcuI	CTGAAG	1 cut(s)	1218
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	7 cut(s)	24, 43, 240, 585, 947, 1047, 1253
AfiI	CCNNNNNNNGG	2 cut(s)	833, 942
AgsI	TTSAA	5 cut(s)	266, 284, 422, 908, 1021
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	6 cut(s)	10, 209, 223, 294, 878, 1135
AluI	AGCT	6 cut(s)	10, 209, 223, 294, 878, 1135
Alw21I	GWGCWC	3 cut(s)	702, 717, 1061
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	4 cut(s)	592, 616, 841, 933
ApeKI	GCWGC	6 cut(s)	209, 314, 338, 371, 548, 1135
ApoI	RAATTY	3 cut(s)	138, 181, 423
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	176, 933
AsuHPI	GGTGA	3 cut(s)	122, 674, 680
AvaII	GGWCC	1 cut(s)	176
BalI	TGGCCA	2 cut(s)	618, 843
Bbv12I	GWGCWC	3 cut(s)	702, 717, 1061
BbvI	GCAGC	6 cut(s)	196, 326, 350, 358, 535, 1122
BccI	CCATC	8 cut(s)	46, 356, 693, 726, 762, 827, 944, 1102
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	108
BclI	TGATCA	5 cut(s)	598, 637, 643, 724, 769
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	560
BisI	GCNGC	6 cut(s)	210, 315, 339, 372, 549, 1136
BlpI	GCTNAGC	1 cut(s)	295
BlsI	GCNGC	6 cut(s)	211, 316, 340, 373, 550, 1137
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	176, 933
BmiI	GGNNCC	1 cut(s)	934
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	91, 301, 1066
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
Bpu1102I	GCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	4 cut(s)	94, 625, 655, 1064
Bsc4I	CCNNNNNNNGG	2 cut(s)	833, 942
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	94, 625, 655, 1064
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	833, 942
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	6 cut(s)	196, 326, 350, 358, 535, 1122
BseYI	CCCAGC	2 cut(s)	378, 467
BsgI	GTGCAG	1 cut(s)	890
BshFI	GGCC	4 cut(s)	594, 618, 843, 935
BsiHKAI	GWGCWC	3 cut(s)	702, 717, 1061
BsiSI	CCGG	1 cut(s)	953
BslFI	GGGAC	2 cut(s)	911, 1024
BslI	CCNNNNNNNGG	2 cut(s)	833, 942
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	911, 1024
BsnI	GGCC	4 cut(s)	594, 618, 843, 935
Bsp1286I	GDGCHC	3 cut(s)	702, 717, 1061
Bsp143I	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
Bsp1720I	GCTNAGC	1 cut(s)	295
Bsp19I	CCATGG	3 cut(s)	94, 625, 655
BspANI	GGCC	4 cut(s)	594, 618, 843, 935
BspHI	TCATGA	5 cut(s)	640, 721, 727, 763, 805
BspLI	GGNNCC	1 cut(s)	934
BspPI	GGATC	1 cut(s)	85
BssECI	CCNNGG	4 cut(s)	94, 625, 655, 1064
BssMI	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
BssT1I	CCWWGG	4 cut(s)	94, 625, 655, 1064
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	156, 165, 588, 1156
Bst6I	CTCTTC	2 cut(s)	108, 257
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	5 cut(s)	221, 376, 465, 1173, 1177
BstDEI	CTNAG	2 cut(s)	11, 295
BstDSI	CCRYGG	3 cut(s)	94, 625, 655
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	7 cut(s)	93, 206, 601, 640, 646, 727, 772
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	6 cut(s)	196, 326, 350, 358, 535, 1122
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	3 cut(s)	52, 602, 626
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	594, 618, 843, 935
BtgI	CCRYGG	3 cut(s)	94, 625, 655
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	5 cut(s)	221, 376, 465, 1173, 1177
CciI	TCATGA	5 cut(s)	640, 721, 727, 763, 805
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	176, 933
Csp6I	GTAC	7 cut(s)	23, 42, 239, 584, 946, 1046, 1252
CviQI	GTAC	7 cut(s)	23, 42, 239, 584, 946, 1046, 1252
DdeI	CTNAG	2 cut(s)	11, 295
DpnI	GATC	7 cut(s)	92, 205, 600, 639, 645, 726, 771
DpnII	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
DraIII	CACNNNGTG	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	616, 841
Eam1104I	CTCTTC	2 cut(s)	108, 257
EarI	CTCTTC	2 cut(s)	108, 257
Eco130I	CCWWGG	4 cut(s)	94, 625, 655, 1064
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	1218
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	4 cut(s)	94, 625, 655, 1064
ErhI	CCWWGG	4 cut(s)	94, 625, 655, 1064
Esp3I	CGTCTC	1 cut(s)	110
FaqI	GGGAC	2 cut(s)	911, 1024
FauNDI	CATATG	2 cut(s)	455, 941
FbaI	TGATCA	5 cut(s)	598, 637, 643, 724, 769
Fnu4HI	GCNGC	6 cut(s)	210, 315, 339, 372, 549, 1136
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	6 cut(s)	210, 315, 339, 372, 549, 1136
FspBI	CTAG	1 cut(s)	560
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	6 cut(s)	210, 315, 339, 372, 549, 1136
GsaI	CCCAGC	2 cut(s)	382, 471
HaeIII	GGCC	4 cut(s)	594, 618, 843, 935
HapII	CCGG	1 cut(s)	953
HhaI	GCGC	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	56, 191
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	3 cut(s)	122, 674, 680
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	7 cut(s)	61, 169, 331, 517, 534, 1193, 1244
Hpy188III	TCNNGA	8 cut(s)	226, 415, 641, 722, 728, 764, 806, 1021
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	788, 893, 1087, 1239
HpyCH4III	ACNGT	4 cut(s)	156, 165, 588, 1156
HpyCH4IV	ACGT	2 cut(s)	519, 867
HpyCH4V	TGCA	8 cut(s)	314, 338, 551, 871, 981, 1079, 1138, 1208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	11, 295
HpySE526I	ACGT	2 cut(s)	519, 867
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	5 cut(s)	598, 637, 643, 724, 769
Kzo9I	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
LmnI	GCTCC	3 cut(s)	109, 697, 875
Lsp1109I	GCAGC	6 cut(s)	196, 326, 350, 358, 535, 1122
LweI	GCATC	3 cut(s)	91, 301, 1066
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	519, 867
MaeIII	GTNAC	1 cut(s)	1267
MalI	GATC	7 cut(s)	92, 205, 600, 639, 645, 726, 771
MboI	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
MboII	GAAGA	8 cut(s)	44, 47, 125, 244, 743, 859, 973, 1124
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	3 cut(s)	702, 717, 1061
MlsI	TGGCCA	2 cut(s)	618, 843
MluCI	AATT	3 cut(s)	138, 181, 423
MluNI	TGGCCA	2 cut(s)	618, 843
MmeI	TCCRAC	4 cut(s)	147, 154, 472, 1083
MnlI	CCTC	2 cut(s)	688, 1023
Mox20I	TGGCCA	2 cut(s)	618, 843
MscI	TGGCCA	2 cut(s)	618, 843
MseI	TTAA	2 cut(s)	567, 1288
Msp20I	TGGCCA	2 cut(s)	618, 843
MspA1I	CMGCKG	2 cut(s)	10, 209
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	344
NcoI	CCATGG	3 cut(s)	94, 625, 655
NdeI	CATATG	2 cut(s)	455, 941
NdeII	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
NlaIV	GGNNCC	1 cut(s)	934
NmuCI	GTSAC	1 cut(s)	1267
NsbI	TGCGCA	1 cut(s)	218
OliI	CACNNNNGTG	1 cut(s)	783
PagI	TCATGA	5 cut(s)	640, 721, 727, 763, 805
PfeI	GAWTC	2 cut(s)	56, 191
PflMI	CCANNNNNTGG	2 cut(s)	833, 942
PkrI	GCNGC	6 cut(s)	211, 316, 340, 373, 550, 1137
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	2 cut(s)	378, 467
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	934
PspPI	GGNCC	2 cut(s)	176, 933
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PsuI	RGATCY	1 cut(s)	90
PvuII	CAGCTG	2 cut(s)	10, 209
RsaI	GTAC	7 cut(s)	24, 43, 240, 585, 947, 1047, 1253
RsaNI	GTAC	7 cut(s)	23, 42, 239, 584, 946, 1046, 1252
SaqAI	TTAA	2 cut(s)	567, 1288
SatI	GCNGC	6 cut(s)	210, 315, 339, 372, 549, 1136
Sau3AI	GATC	7 cut(s)	90, 203, 598, 637, 643, 724, 769
Sau96I	GGNCC	2 cut(s)	176, 933
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	3 cut(s)	702, 717, 1061
SfaNI	GCATC	3 cut(s)	91, 301, 1066
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
Sse9I	AATT	3 cut(s)	138, 181, 423
SspI	AATATT	3 cut(s)	303, 571, 990
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	4 cut(s)	94, 625, 655, 1064
TaaI	ACNGT	4 cut(s)	156, 165, 588, 1156
TaiI	ACGT	2 cut(s)	522, 870
TaqI	TCGA	1 cut(s)	704
TasI	AATT	3 cut(s)	138, 181, 423
TatI	WGTACW	4 cut(s)	22, 583, 1045, 1251
TfiI	GAWTC	2 cut(s)	56, 191
Tru1I	TTAA	2 cut(s)	567, 1288
Tru9I	TTAA	2 cut(s)	567, 1288
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	1267
TseI	GCWGC	6 cut(s)	209, 314, 338, 371, 548, 1135
Tsp45I	GTSAC	1 cut(s)	1267
TspDTI	ATGAA	6 cut(s)	244, 498, 744, 762, 807, 875
TspGWI	ACGGA	1 cut(s)	871
TspRI	CASTG	1 cut(s)	240
Van91I	CCANNNNNTGG	2 cut(s)	833, 942
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	3 cut(s)	138, 181, 423
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.