Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

15364025 .. 15365983

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGTTCATAGGCCTGAGTTTGCCGATGGAATCAGAGAATACACCACATTCCCAGATTATTGAGATCCGTGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAGATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCACATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGAGGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGGTCATGGCCACGGCCATGGACATGATGATCATGATCATCACAGCCATGTAATGACATTTTCTACTCATCATCACCATGAGGAACACTCTACTGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACGGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTTATTGTTTTGGGGACAACTTTCAAGATGATAAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACGAAACTTGAGAAGGGGCTGTTGGAGATGGGAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGCACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

419

Amino Acids

46.4

Weight (kDa)

5.76

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	67 - 341	2.6e-36	Cation efflux transmembrane domain
ZT_dimer	PF16916	345 - 418	1.2e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	912
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	3 cut(s)	592, 598, 811
AcuI	CTGAAG	1 cut(s)	1188
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	216, 561, 917, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	803, 912
AgsI	TTSAA	4 cut(s)	242, 260, 878, 991
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AleI	CACNNNNGTG	1 cut(s)	753
AluBI	AGCT	5 cut(s)	185, 199, 270, 848, 1105
AluI	AGCT	5 cut(s)	185, 199, 270, 848, 1105
Alw21I	GWGCWC	3 cut(s)	687, 1031, 1224
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	6 cut(s)	13, 568, 592, 598, 811, 903
ApeKI	GCWGC	6 cut(s)	185, 290, 314, 347, 524, 1105
AseI	ATTAAT	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	152, 903
AsuHPI	GGTGA	3 cut(s)	98, 508, 650
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	2 cut(s)	594, 813
Bbv12I	GWGCWC	3 cut(s)	687, 1031, 1224
BbvI	GCAGC	6 cut(s)	172, 302, 326, 334, 511, 1092
BccI	CCATC	6 cut(s)	22, 332, 696, 732, 914, 1072
BceAI	ACGGC	2 cut(s)	397, 613
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	5 cut(s)	574, 613, 619, 694, 739
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	536
BisI	GCNGC	6 cut(s)	186, 291, 315, 348, 525, 1106
BlpI	GCTNAGC	1 cut(s)	271
BlsI	GCNGC	6 cut(s)	187, 292, 316, 349, 526, 1107
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 903
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	67, 277, 1036
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
Bpu1102I	GCTNAGC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	1079
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	4 cut(s)	70, 595, 601, 1034
BsaXI	ACNNNNNCTCC	2 cut(s)	1074, 1104
Bsc4I	CCNNNNNNNGG	2 cut(s)	803, 912
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	70, 595, 601, 1034
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	803, 912
BseMII	CTCAG	2 cut(s)	8, 483
BseXI	GCAGC	6 cut(s)	172, 302, 326, 334, 511, 1092
BseYI	CCCAGC	2 cut(s)	354, 443
BsgI	GTGCAG	1 cut(s)	860
BshFI	GGCC	6 cut(s)	15, 570, 594, 600, 813, 905
BsiHKAI	GWGCWC	3 cut(s)	687, 1031, 1224
BsiSI	CCGG	1 cut(s)	923
BslFI	GGGAC	2 cut(s)	881, 994
BslI	CCNNNNNNNGG	2 cut(s)	803, 912
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	2 cut(s)	881, 994
BsnI	GGCC	6 cut(s)	15, 570, 594, 600, 813, 905
Bsp1286I	GDGCHC	3 cut(s)	687, 1031, 1224
Bsp143I	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
Bsp1720I	GCTNAGC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	601
BspANI	GGCC	6 cut(s)	15, 570, 594, 600, 813, 905
BspCNI	CTCAG	2 cut(s)	9, 484
BspHI	TCATGA	5 cut(s)	616, 691, 697, 733, 775
BspLI	GGNNCC	1 cut(s)	904
BspPI	GGATC	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	70, 595, 601, 1034
BssMI	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
BssT1I	CCWWGG	2 cut(s)	601, 1034
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	5 cut(s)	132, 141, 564, 731, 1126
Bst6I	CTCTTC	2 cut(s)	84, 233
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	5 cut(s)	197, 352, 441, 1143, 1147
BstDEI	CTNAG	3 cut(s)	17, 271, 492
BstDSI	CCRYGG	3 cut(s)	70, 595, 601
BstF5I	GGATG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	7 cut(s)	69, 182, 577, 616, 622, 697, 742
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	6 cut(s)	172, 302, 326, 334, 511, 1092
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	2 cut(s)	578, 602
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	6 cut(s)	15, 570, 594, 600, 813, 905
BtgI	CCRYGG	3 cut(s)	70, 595, 601
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	5 cut(s)	197, 352, 441, 1143, 1147
CciI	TCATGA	5 cut(s)	616, 691, 697, 733, 775
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	152, 903
Csp6I	GTAC	4 cut(s)	215, 560, 916, 1016
CviQI	GTAC	4 cut(s)	215, 560, 916, 1016
DdeI	CTNAG	3 cut(s)	17, 271, 492
DpnI	GATC	7 cut(s)	68, 181, 576, 615, 621, 696, 741
DpnII	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	3 cut(s)	592, 598, 811
Eam1104I	CTCTTC	2 cut(s)	84, 233
EarI	CTCTTC	2 cut(s)	84, 233
Eco130I	CCWWGG	2 cut(s)	601, 1034
Eco147I	AGGCCT	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	1188
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	601, 1034
ErhI	CCWWGG	2 cut(s)	601, 1034
Esp3I	CGTCTC	1 cut(s)	86
FaqI	GGGAC	2 cut(s)	881, 994
FauNDI	CATATG	2 cut(s)	431, 911
FbaI	TGATCA	5 cut(s)	574, 613, 619, 694, 739
Fnu4HI	GCNGC	6 cut(s)	186, 291, 315, 348, 525, 1106
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	6 cut(s)	186, 291, 315, 348, 525, 1106
FspBI	CTAG	1 cut(s)	536
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	6 cut(s)	186, 291, 315, 348, 525, 1106
GsaI	CCCAGC	2 cut(s)	358, 447
HaeIII	GGCC	6 cut(s)	15, 570, 594, 600, 813, 905
HapII	CCGG	1 cut(s)	923
HhaI	GCGC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	32, 167, 400
HpaII	CCGG	1 cut(s)	923
HphI	GGTGA	3 cut(s)	98, 508, 650
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	7 cut(s)	37, 145, 307, 493, 510, 1163, 1214
Hpy188III	TCNNGA	8 cut(s)	202, 391, 617, 692, 698, 734, 776, 991
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	758, 863, 1057, 1209
HpyCH4III	ACNGT	5 cut(s)	132, 141, 564, 731, 1126
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	8 cut(s)	290, 314, 527, 841, 951, 1049, 1108, 1178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	17, 271, 492
HpySE526I	ACGT	1 cut(s)	837
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	5 cut(s)	574, 613, 619, 694, 739
Kzo9I	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
LmnI	GCTCC	3 cut(s)	85, 845, 1219
Lsp1109I	GCAGC	6 cut(s)	172, 302, 326, 334, 511, 1092
LweI	GCATC	3 cut(s)	67, 277, 1036
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	1 cut(s)	1237
MalI	GATC	7 cut(s)	68, 181, 576, 615, 621, 696, 741
MboI	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
MboII	GAAGA	5 cut(s)	101, 220, 713, 829, 943
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	3 cut(s)	687, 1031, 1224
MlsI	TGGCCA	2 cut(s)	594, 813
MluNI	TGGCCA	2 cut(s)	594, 813
MmeI	TCCRAC	4 cut(s)	123, 130, 448, 1053
MnlI	CCTC	2 cut(s)	487, 658
Mox20I	TGGCCA	2 cut(s)	594, 813
MscI	TGGCCA	2 cut(s)	594, 813
MseI	TTAA	3 cut(s)	480, 543, 1258
Msp20I	TGGCCA	2 cut(s)	594, 813
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	923
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	601
NdeI	CATATG	2 cut(s)	431, 911
NdeII	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
NlaIV	GGNNCC	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	1237
NsbI	TGCGCA	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	753
PagI	TCATGA	5 cut(s)	616, 691, 697, 733, 775
PceI	AGGCCT	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	32, 167, 400
PflMI	CCANNNNNTGG	1 cut(s)	912
PkrI	GCNGC	6 cut(s)	187, 292, 316, 349, 526, 1107
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	2 cut(s)	354, 443
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	904
PspPI	GGNCC	2 cut(s)	152, 903
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	4 cut(s)	216, 561, 917, 1017
RsaNI	GTAC	4 cut(s)	215, 560, 916, 1016
SaqAI	TTAA	3 cut(s)	480, 543, 1258
SatI	GCNGC	6 cut(s)	186, 291, 315, 348, 525, 1106
Sau3AI	GATC	7 cut(s)	66, 179, 574, 613, 619, 694, 739
Sau96I	GGNCC	2 cut(s)	152, 903
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	3 cut(s)	687, 1031, 1224
SfaNI	GCATC	3 cut(s)	67, 277, 1036
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
SseBI	AGGCCT	1 cut(s)	15
SspI	AATATT	3 cut(s)	279, 547, 960
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	601, 1034
TaaI	ACNGT	5 cut(s)	132, 141, 564, 731, 1126
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	1 cut(s)	1011
TatI	WGTACW	2 cut(s)	559, 1015
TfiI	GAWTC	3 cut(s)	32, 167, 400
Tru1I	TTAA	3 cut(s)	480, 543, 1258
Tru9I	TTAA	3 cut(s)	480, 543, 1258
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	6 cut(s)	185, 290, 314, 347, 524, 1105
Tsp45I	GTSAC	1 cut(s)	1237
TspDTI	ATGAA	6 cut(s)	220, 474, 714, 732, 777, 845
TspGWI	ACGGA	2 cut(s)	59, 841
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	912
VpaK11BI	GGWCC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	480
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.