Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001816.1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

34290 .. 35558

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001816.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggaatcagagaatacacaacattcccagattattgagatccatggagatgctcctggtgaacagacgagtgtgggttggagtaagatttgtggggaagcaccgtgtggactgtcggatgttggaccgcattctaaagattccaaagaacgatcagctgccatgcgcaagctcttgatagcagtggtactctgtgttctcttcatgggtgttgaagtgtttggtggcattgaagccaatagcttagcaatattgactgatgcagcacatttgctctctgatgttgcagcctttgccatctccttgttctccttgtgggctgctggctgggaaaccactccccgtcagtcatacggctttttcaggattgagattctcggtgctttggtttctatccaactcatatggttgcttgctgggatattggtgtatgaagccattgttagaatgattaataacacatctgatgtgaatggttttctgatgtttcttgttgctgcatttggtctagtggttaatattggcatggctgtactgttaggccatgatcatggtcatgatcatggccacggccatggacatggtcatggccacggccatggacatgatgatcatgatcatcacagccatggaatgacattttctactcatcatcaccatcaccatcaccatgaggaacactcgaatgacgagcaccatcatgatcatgaagaacactcgcatgatgaacaccttcacagtcatgatgatcataaacacaatggtgctgatgatggtcatgctcatgagccactcttggacaagcccaaagacgggcatggccagaagaagcaacggaacataaacgtgcagggagcttaccttcatgttcttggggacttggttcaaagtatcggtgtaatgattggtggggccatcatatggtacaagccggaatggaagatagttgatttgatttgcaccctaatattttctgttattgttttggggacaactttcaagatgataaggaacatacttgatgtactaatggagagcacaccaagggagattgatgcaacgaaacttgagaaggggctattggagatgggagaagtggtggaaatccatgagctgcatatatgggcaatcacagttgggaaagtcctgctggcttgccatgtgaaaatcagacctgaagcaaatgcagacatggtgctggacaaagtgattgattatatcagaagggagcacaacatcagccatgtgactatacaagttgagcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

422

Amino Acids

46.88

Weight (kDa)

5.92

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	921
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	5 cut(s)	565, 571, 589, 595, 820
AcuI	CTGAAG	1 cut(s)	1197
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	189, 534, 926, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	812, 813, 921
AgsI	TTSAA	4 cut(s)	215, 233, 887, 1000
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1064, 1096
AleI	CACNNNNGTG	1 cut(s)	762
AluBI	AGCT	5 cut(s)	158, 172, 243, 857, 1114
AluI	AGCT	5 cut(s)	158, 172, 243, 857, 1114
Alw21I	GWGCWC	3 cut(s)	696, 1040, 1233
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	7 cut(s)	541, 565, 571, 589, 595, 820, 912
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1114
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 912
AsuHPI	GGTGA	4 cut(s)	71, 647, 653, 659
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	3 cut(s)	567, 591, 822
Bbv12I	GWGCWC	3 cut(s)	696, 1040, 1233
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1101
BccI	CCATC	7 cut(s)	305, 666, 672, 705, 767, 923, 1081
BceAI	ACGGC	3 cut(s)	370, 586, 610
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	6 cut(s)	547, 559, 610, 616, 703, 748
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1115
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1116
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 912
BmiI	GGNNCC	1 cut(s)	913
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	40, 250, 1045
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1088
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1043
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	3 cut(s)	812, 813, 921
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1043
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	812, 813, 921
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1101
BseYI	CCCAGC	2 cut(s)	327, 416
BsgI	GTGCAG	1 cut(s)	869
BshFI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 822, 914
BsiHKAI	GWGCWC	3 cut(s)	696, 1040, 1233
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	2 cut(s)	890, 1003
BslI	CCNNNNNNNGG	3 cut(s)	812, 813, 921
BsmFI	GGGAC	2 cut(s)	890, 1003
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 822, 914
Bsp1286I	GDGCHC	3 cut(s)	696, 1040, 1233
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	4 cut(s)	43, 574, 598, 628
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 822, 914
BspHI	TCATGA	6 cut(s)	556, 613, 700, 706, 742, 784
BspLI	GGNNCC	1 cut(s)	913
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 1043
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
BssT1I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1043
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	105, 114, 537, 740, 1135
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1152, 1156
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 613, 619, 706, 751
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1101
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	4 cut(s)	551, 575, 581, 599
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 822, 914
BtgI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1152, 1156
CciI	TCATGA	6 cut(s)	556, 613, 700, 706, 742, 784
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 912
Csp6I	GTAC	4 cut(s)	188, 533, 925, 1025
CviQI	GTAC	4 cut(s)	188, 533, 925, 1025
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 705, 750
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	5 cut(s)	565, 571, 589, 595, 820
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1043
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1197
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	5 cut(s)	43, 574, 598, 628, 1043
ErhI	CCWWGG	5 cut(s)	43, 574, 598, 628, 1043
FaqI	GGGAC	2 cut(s)	890, 1003
FauNDI	CATATG	2 cut(s)	404, 920
FbaI	TGATCA	6 cut(s)	547, 559, 610, 616, 703, 748
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1115
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1115
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1115
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	7 cut(s)	543, 567, 573, 591, 597, 822, 914
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	4 cut(s)	71, 647, 653, 659
Hpy166II	GTNNAC	2 cut(s)	62, 110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1172, 1223
Hpy188III	TCNNGA	9 cut(s)	175, 364, 557, 614, 701, 707, 743, 785, 1000
Hpy8I	GTNNAC	2 cut(s)	62, 110
HpyAV	CCTTC	4 cut(s)	743, 872, 1066, 1218
HpyCH4III	ACNGT	5 cut(s)	105, 114, 537, 740, 1135
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 850, 960, 1058, 1117, 1187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	846
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 610, 616, 703, 748
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
LmnI	GCTCC	3 cut(s)	58, 854, 1228
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1101
LweI	GCATC	3 cut(s)	40, 250, 1045
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	1 cut(s)	1246
MalI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 705, 750
MboI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
MboII	GAAGA	4 cut(s)	193, 722, 838, 952
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	696, 1040, 1233
MlsI	TGGCCA	3 cut(s)	567, 591, 822
MluNI	TGGCCA	3 cut(s)	567, 591, 822
MmeI	TCCRAC	4 cut(s)	59, 96, 103, 421
MnlI	CCTC	1 cut(s)	667
Mox20I	TGGCCA	3 cut(s)	567, 591, 822
MroXI	GAANNNNTTC	1 cut(s)	732
MscI	TGGCCA	3 cut(s)	567, 591, 822
MseI	TTAA	3 cut(s)	453, 516, 1267
Msp20I	TGGCCA	3 cut(s)	567, 591, 822
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	43, 574, 598, 628
NdeI	CATATG	2 cut(s)	404, 920
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
NlaIV	GGNNCC	1 cut(s)	913
NmuCI	GTSAC	1 cut(s)	1246
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	762
PagI	TCATGA	6 cut(s)	556, 613, 700, 706, 742, 784
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflFI	GACNNNGTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	921
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1116
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	913
PspPI	GGNCC	2 cut(s)	125, 912
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	189, 534, 926, 1026
RsaNI	GTAC	4 cut(s)	188, 533, 925, 1025
SaqAI	TTAA	3 cut(s)	453, 516, 1267
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1115
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 703, 748
Sau96I	GGNCC	2 cut(s)	125, 912
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	696, 1040, 1233
SetI	ASST	9 cut(s)	160, 174, 245, 735, 849, 859, 864, 1116, 1177
SfaNI	GCATC	3 cut(s)	40, 250, 1045
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	3 cut(s)	252, 520, 969
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	5 cut(s)	43, 574, 598, 628, 1043
TaaI	ACNGT	5 cut(s)	105, 114, 537, 740, 1135
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	1 cut(s)	683
TatI	WGTACW	2 cut(s)	532, 1024
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1267
Tru9I	TTAA	3 cut(s)	453, 516, 1267
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1246
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1114
Tsp45I	GTSAC	1 cut(s)	1246
TspDTI	ATGAA	5 cut(s)	193, 447, 723, 741, 854
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.