Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

55007094 .. 55017848

Gene Structure 10755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTGAGATGGAATCAGAGAATACACAACATTCCCAGATTATCGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCATGTGGACTGTCGGATGTTGGACCAAATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGAGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCTTTGTGGGCTGCTAGCTGGGAAACCACTCCTCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGATGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGTCATGATCATGGCCATGGCCATGGACATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCGTCGCCATGAGGAACACTCGAATGACGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATTGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTTGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGGCAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

413

Amino Acids

45.95

Weight (kDa)

5.75

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	61 - 335	5.7e-36	Cation efflux transmembrane domain
ZT_dimer	PF16916	339 - 412	4.8e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	894
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	3 cut(s)	562, 568, 793
AcsI	RAATTY	2 cut(s)	96, 139
AcuI	CTGAAG	1 cut(s)	1170
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	5 cut(s)	198, 543, 899, 999, 1205
AfiI	CCNNNNNNNGG	2 cut(s)	785, 894
AgsI	TTSAA	4 cut(s)	224, 242, 860, 973
AjnI	CCWGG	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	1037, 1069
AleI	CACNNNNGTG	1 cut(s)	735
AluBI	AGCT	6 cut(s)	167, 181, 252, 336, 830, 1087
AluI	AGCT	6 cut(s)	167, 181, 252, 336, 830, 1087
Alw21I	GWGCWC	2 cut(s)	669, 1013
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	4 cut(s)	562, 568, 793, 885
ApeKI	GCWGC	6 cut(s)	167, 272, 296, 329, 506, 1087
ApoI	RAATTY	2 cut(s)	96, 139
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	134, 885
AsuHPI	GGTGA	2 cut(s)	80, 626
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	3 cut(s)	564, 570, 795
Bbv12I	GWGCWC	2 cut(s)	669, 1013
BbvI	GCAGC	6 cut(s)	154, 284, 308, 316, 493, 1074
BccI	CCATC	6 cut(s)	4, 314, 678, 714, 896, 1054
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	5 cut(s)	556, 589, 595, 676, 721
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	333, 518
BisI	GCNGC	6 cut(s)	168, 273, 297, 330, 507, 1088
BlpI	GCTNAGC	1 cut(s)	253
BlsI	GCNGC	6 cut(s)	169, 274, 298, 331, 508, 1089
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 885
BmiI	GGNNCC	1 cut(s)	886
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	49, 259, 1018
BmtI	GCTAGC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
Bpu1102I	GCTNAGC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	1061
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	52, 565, 571, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 894
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	52, 565, 571, 607
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	785, 894
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	6 cut(s)	154, 284, 308, 316, 493, 1074
BseYI	CCCAGC	3 cut(s)	336, 425, 1171
BsgI	GTGCAG	1 cut(s)	842
BshFI	GGCC	4 cut(s)	564, 570, 795, 887
BsiHKAI	GWGCWC	2 cut(s)	669, 1013
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	2 cut(s)	863, 976
BslI	CCNNNNNNNGG	2 cut(s)	785, 894
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	863, 976
BsnI	GGCC	4 cut(s)	564, 570, 795, 887
Bsp1286I	GDGCHC	2 cut(s)	669, 1013
Bsp143I	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
Bsp1720I	GCTNAGC	1 cut(s)	253
Bsp19I	CCATGG	4 cut(s)	52, 565, 571, 607
BspANI	GGCC	4 cut(s)	564, 570, 795, 887
BspHI	TCATGA	7 cut(s)	213, 553, 592, 673, 679, 715, 757
BspLI	GGNNCC	1 cut(s)	886
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	43
BssECI	CCNNGG	4 cut(s)	52, 565, 571, 607
BssMI	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
BssT1I	CCWWGG	4 cut(s)	52, 565, 571, 607
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	5 cut(s)	123, 546, 638, 713, 1108
Bst6I	CTCTTC	2 cut(s)	66, 215
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	5 cut(s)	179, 334, 423, 1125, 1129
BstDEI	CTNAG	2 cut(s)	6, 253
BstDSI	CCRYGG	4 cut(s)	52, 565, 571, 607
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	7 cut(s)	51, 164, 559, 592, 598, 679, 724
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstV1I	GCAGC	6 cut(s)	154, 284, 308, 316, 493, 1074
BstX2I	RGATCY	1 cut(s)	48
BstXI	CCANNNNNNTGG	2 cut(s)	572, 578
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	564, 570, 795, 887
BtgI	CCRYGG	4 cut(s)	52, 565, 571, 607
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	5 cut(s)	179, 334, 423, 1125, 1129
CciI	TCATGA	7 cut(s)	213, 553, 592, 673, 679, 715, 757
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	134, 885
Csp6I	GTAC	5 cut(s)	197, 542, 898, 998, 1204
CviQI	GTAC	5 cut(s)	197, 542, 898, 998, 1204
DdeI	CTNAG	2 cut(s)	6, 253
DpnI	GATC	7 cut(s)	50, 163, 558, 591, 597, 678, 723
DpnII	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	3 cut(s)	562, 568, 793
Eam1104I	CTCTTC	2 cut(s)	66, 215
EarI	CTCTTC	2 cut(s)	66, 215
Eco130I	CCWWGG	4 cut(s)	52, 565, 571, 607
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	1170
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	4 cut(s)	52, 565, 571, 607
ErhI	CCWWGG	4 cut(s)	52, 565, 571, 607
Esp3I	CGTCTC	1 cut(s)	68
FaqI	GGGAC	2 cut(s)	863, 976
FauNDI	CATATG	2 cut(s)	413, 893
FbaI	TGATCA	5 cut(s)	556, 589, 595, 676, 721
Fnu4HI	GCNGC	6 cut(s)	168, 273, 297, 330, 507, 1088
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	6 cut(s)	168, 273, 297, 330, 507, 1088
FspBI	CTAG	2 cut(s)	333, 518
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	6 cut(s)	168, 273, 297, 330, 507, 1088
GsaI	CCCAGC	3 cut(s)	340, 429, 1175
HaeIII	GGCC	4 cut(s)	564, 570, 795, 887
HapII	CCGG	1 cut(s)	905
HhaI	GCGC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	14, 149, 382
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	2 cut(s)	80, 626
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	7 cut(s)	19, 127, 289, 475, 492, 1145, 1196
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	4 cut(s)	740, 845, 1039, 1191
HpyCH4III	ACNGT	5 cut(s)	123, 546, 638, 713, 1108
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	8 cut(s)	272, 296, 509, 823, 933, 1031, 1090, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	6, 253
HpySE526I	ACGT	1 cut(s)	819
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	5 cut(s)	556, 589, 595, 676, 721
Kzo9I	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
LmnI	GCTCC	2 cut(s)	67, 827
Lsp1109I	GCAGC	6 cut(s)	154, 284, 308, 316, 493, 1074
LweI	GCATC	3 cut(s)	49, 259, 1018
MaeI	CTAG	2 cut(s)	333, 518
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	1219
MalI	GATC	7 cut(s)	50, 163, 558, 591, 597, 678, 723
MboI	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
MboII	GAAGA	6 cut(s)	83, 202, 695, 811, 925, 1076
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	669, 1013
MlsI	TGGCCA	3 cut(s)	564, 570, 795
MluCI	AATT	2 cut(s)	96, 139
MluNI	TGGCCA	3 cut(s)	564, 570, 795
MmeI	TCCRAC	4 cut(s)	105, 112, 430, 1035
MnlI	CCTC	3 cut(s)	360, 640, 975
Mox20I	TGGCCA	3 cut(s)	564, 570, 795
MscI	TGGCCA	3 cut(s)	564, 570, 795
MseI	TTAA	3 cut(s)	462, 525, 1240
Msp20I	TGGCCA	3 cut(s)	564, 570, 795
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	4 cut(s)	52, 565, 571, 607
NdeI	CATATG	2 cut(s)	413, 893
NdeII	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
NheI	GCTAGC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	1219
NsbI	TGCGCA	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	735
PagI	TCATGA	7 cut(s)	213, 553, 592, 673, 679, 715, 757
PfeI	GAWTC	3 cut(s)	14, 149, 382
PflMI	CCANNNNNTGG	1 cut(s)	894
PkrI	GCNGC	6 cut(s)	169, 274, 298, 331, 508, 1089
PshBI	ATTAAT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	3 cut(s)	336, 425, 1171
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	886
PspPI	GGNCC	2 cut(s)	134, 885
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	5 cut(s)	198, 543, 899, 999, 1205
RsaNI	GTAC	5 cut(s)	197, 542, 898, 998, 1204
SaqAI	TTAA	3 cut(s)	462, 525, 1240
SatI	GCNGC	6 cut(s)	168, 273, 297, 330, 507, 1088
Sau3AI	GATC	7 cut(s)	48, 161, 556, 589, 595, 676, 721
Sau96I	GGNCC	2 cut(s)	134, 885
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	669, 1013
SfaNI	GCATC	3 cut(s)	49, 259, 1018
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
Sse9I	AATT	2 cut(s)	96, 139
SspI	AATATT	3 cut(s)	261, 529, 942
SspMI	CTAG	2 cut(s)	333, 518
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	4 cut(s)	52, 565, 571, 607
TaaI	ACNGT	5 cut(s)	123, 546, 638, 713, 1108
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	2 cut(s)	45, 656
TasI	AATT	2 cut(s)	96, 139
TatI	WGTACW	3 cut(s)	541, 997, 1203
TfiI	GAWTC	3 cut(s)	14, 149, 382
Tru1I	TTAA	3 cut(s)	462, 525, 1240
Tru9I	TTAA	3 cut(s)	462, 525, 1240
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	1219
TseI	GCWGC	6 cut(s)	167, 272, 296, 329, 506, 1087
Tsp45I	GTSAC	1 cut(s)	1219
TspDTI	ATGAA	6 cut(s)	202, 456, 696, 714, 759, 827
TspGWI	ACGGA	1 cut(s)	823
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	894
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	96, 139
XspI	CTAG	2 cut(s)	333, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.