Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

53467250 .. 53468500

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAATCAGAGAATACACAATATTCCCAGATTATTGAGATCCATGGAGATGCTCCTGGTGAACAGACGAGTGTGGGTGGGAGTAAGATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCGCATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCATACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGATGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGATCATGGCCACGGCCATGGACATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCATCACCATCACCATGAGGAACACTCGAATGACGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCTTCACAGTCATGATGATCATAAACACAATGGTGCTGATGATGGTCATGCTCATGAGCCACTCTTGGACAAGCCCAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTTATTGTTTTGGGGACAACTTTCAAGATGATAAGGAACATACTTGATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACGAAACTTGAGAAGGGGCTATTGGAGATGGGAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGCACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

416

Amino Acids

46.2

Weight (kDa)

5.84

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 338	3.7e-35	Cation efflux transmembrane domain
ZT_dimer	PF16916	342 - 415	1.2e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	903
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	3 cut(s)	565, 571, 802
AcuI	CTGAAG	1 cut(s)	1179
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	189, 534, 908, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	794, 795, 903
AgsI	TTSAA	4 cut(s)	215, 233, 869, 982
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AleI	CACNNNNGTG	1 cut(s)	744
AluBI	AGCT	5 cut(s)	158, 172, 243, 839, 1096
AluI	AGCT	5 cut(s)	158, 172, 243, 839, 1096
Alw21I	GWGCWC	3 cut(s)	678, 1022, 1215
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	5 cut(s)	541, 565, 571, 802, 894
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1096
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 894
AsuHPI	GGTGA	4 cut(s)	71, 629, 635, 641
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	567, 804
Bbv12I	GWGCWC	3 cut(s)	678, 1022, 1215
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1083
BccI	CCATC	7 cut(s)	305, 648, 654, 687, 749, 905, 1063
BceAI	ACGGC	2 cut(s)	370, 586
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	6 cut(s)	547, 559, 592, 598, 685, 730
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1097
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1098
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 894
BmiI	GGNNCC	1 cut(s)	895
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	40, 250, 1027
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1070
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	43, 568, 574, 610, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	794, 795, 903
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	5 cut(s)	43, 568, 574, 610, 1025
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	794, 795, 903
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1083
BseYI	CCCAGC	2 cut(s)	327, 416
BsgI	GTGCAG	1 cut(s)	851
BshFI	GGCC	5 cut(s)	543, 567, 573, 804, 896
BsiHKAI	GWGCWC	3 cut(s)	678, 1022, 1215
BsiSI	CCGG	1 cut(s)	914
BslFI	GGGAC	2 cut(s)	872, 985
BslI	CCNNNNNNNGG	3 cut(s)	794, 795, 903
BsmFI	GGGAC	2 cut(s)	872, 985
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	5 cut(s)	543, 567, 573, 804, 896
Bsp1286I	GDGCHC	3 cut(s)	678, 1022, 1215
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	3 cut(s)	43, 574, 610
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	5 cut(s)	543, 567, 573, 804, 896
BspHI	TCATGA	6 cut(s)	556, 595, 682, 688, 724, 766
BspLI	GGNNCC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	5 cut(s)	43, 568, 574, 610, 1025
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
BssT1I	CCWWGG	4 cut(s)	43, 574, 610, 1025
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	105, 114, 537, 722, 1117
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1134, 1138
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	4 cut(s)	43, 568, 574, 610
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 595, 601, 688, 733
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1083
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	3 cut(s)	551, 575, 581
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	543, 567, 573, 804, 896
BtgI	CCRYGG	4 cut(s)	43, 568, 574, 610
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1134, 1138
CciI	TCATGA	6 cut(s)	556, 595, 682, 688, 724, 766
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 894
Csp6I	GTAC	4 cut(s)	188, 533, 907, 1007
CviQI	GTAC	4 cut(s)	188, 533, 907, 1007
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 594, 600, 687, 732
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	565, 571, 802
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	4 cut(s)	43, 574, 610, 1025
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1179
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 574, 610, 1025
ErhI	CCWWGG	4 cut(s)	43, 574, 610, 1025
FaqI	GGGAC	2 cut(s)	872, 985
FauNDI	CATATG	2 cut(s)	404, 902
FbaI	TGATCA	6 cut(s)	547, 559, 592, 598, 685, 730
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1097
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1097
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1097
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	5 cut(s)	543, 567, 573, 804, 896
HapII	CCGG	1 cut(s)	914
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	914
HphI	GGTGA	4 cut(s)	71, 629, 635, 641
Hpy166II	GTNNAC	2 cut(s)	62, 110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1154, 1205
Hpy188III	TCNNGA	9 cut(s)	175, 364, 557, 596, 683, 689, 725, 767, 982
Hpy8I	GTNNAC	2 cut(s)	62, 110
HpyAV	CCTTC	4 cut(s)	725, 854, 1048, 1200
HpyCH4III	ACNGT	5 cut(s)	105, 114, 537, 722, 1117
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 832, 942, 1040, 1099, 1169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	828
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 592, 598, 685, 730
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
LmnI	GCTCC	3 cut(s)	58, 836, 1210
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1083
LweI	GCATC	3 cut(s)	40, 250, 1027
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	1 cut(s)	1228
MalI	GATC	8 cut(s)	41, 154, 549, 561, 594, 600, 687, 732
MboI	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
MboII	GAAGA	4 cut(s)	193, 704, 820, 934
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	678, 1022, 1215
MlsI	TGGCCA	2 cut(s)	567, 804
MluNI	TGGCCA	2 cut(s)	567, 804
MmeI	TCCRAC	3 cut(s)	96, 103, 421
MnlI	CCTC	1 cut(s)	649
Mox20I	TGGCCA	2 cut(s)	567, 804
MroXI	GAANNNNTTC	1 cut(s)	714
MscI	TGGCCA	2 cut(s)	567, 804
MseI	TTAA	3 cut(s)	453, 516, 1249
Msp20I	TGGCCA	2 cut(s)	567, 804
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	914
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	3 cut(s)	43, 574, 610
NdeI	CATATG	2 cut(s)	404, 902
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
NlaIV	GGNNCC	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	1228
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	744
PagI	TCATGA	6 cut(s)	556, 595, 682, 688, 724, 766
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflMI	CCANNNNNTGG	1 cut(s)	903
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1098
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	895
PspPI	GGNCC	2 cut(s)	125, 894
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	189, 534, 908, 1008
RsaNI	GTAC	4 cut(s)	188, 533, 907, 1007
SaqAI	TTAA	3 cut(s)	453, 516, 1249
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1097
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 592, 598, 685, 730
Sau96I	GGNCC	2 cut(s)	125, 894
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	678, 1022, 1215
SetI	ASST	9 cut(s)	160, 174, 245, 717, 831, 841, 846, 1098, 1159
SfaNI	GCATC	3 cut(s)	40, 250, 1027
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1049
SmoI	CTYRAG	1 cut(s)	1049
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	4 cut(s)	23, 252, 520, 951
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 574, 610, 1025
TaaI	ACNGT	5 cut(s)	105, 114, 537, 722, 1117
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	1 cut(s)	665
TatI	WGTACW	2 cut(s)	532, 1006
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1249
Tru9I	TTAA	3 cut(s)	453, 516, 1249
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1228
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1096
Tsp45I	GTSAC	1 cut(s)	1228
TspDTI	ATGAA	5 cut(s)	193, 447, 705, 723, 836
TspGWI	ACGGA	1 cut(s)	832
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.