Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

40178662 .. 40179612

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCATGGTGGTGGTAAATTGCAGTTAATTAATCTGGCTATTGCACTTGCTAATAAGTGTGGAATGAAGGTCGGCTTGCTTGATGCTGATGTGTATGGACCAAATGTTCCAATCATGATGAAGCTGGAAGGAAAGCCAAAAGTGACCAAAGGGAGTGTTGAACATGAAAAGGGTGTCACAGCATCCCAGTTTCAGAGCCATGACCACTTTGCAAACGCATCTATCGTAAATGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

79

Amino Acids

8.33

Weight (kDa)

8.86

Isoelectric Point (pI)

12.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	10 - 50	3.6e-10	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	73, 191, 227
BmuI	ACTGGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	98
CviAII	CATG	4 cut(s)	5, 115, 164, 200
CviJI	RGCY	5 cut(s)	38, 75, 124, 136, 198
CviKI_1	RGCY	5 cut(s)	38, 75, 124, 136, 198
Eco47I	GGWCC	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 118, 167, 203
FaiI	YATR	5 cut(s)	6, 96, 116, 165, 201
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	4, 114, 163, 199
FokI	GGATG	1 cut(s)	169
Hin1II	CATG	4 cut(s)	8, 118, 167, 203
HinfI	GANTC	1 cut(s)	234
Hpy188I	TCNGA	2 cut(s)	195, 239
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	61, 122
HpyCH4V	TGCA	4 cut(s)	4, 22, 44, 212
Hsp92II	CATG	4 cut(s)	8, 118, 167, 203
LpnPI	CCDG	3 cut(s)	20, 110, 200
LweI	GCATC	3 cut(s)	73, 191, 227
MaeIII	GTNAC	2 cut(s)	142, 175
MluCI	AATT	2 cut(s)	17, 27
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	26, 30
MslI	CAYNNNNRTG	1 cut(s)	9
NlaIII	CATG	4 cut(s)	8, 118, 167, 203
NmuCI	GTSAC	2 cut(s)	142, 175
NsiI	ATGCAT	1 cut(s)	6
PacI	TTAATTAA	1 cut(s)	30
PagI	TCATGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	234
PshBI	ATTAAT	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	26, 30
Sau96I	GGNCC	1 cut(s)	98
SetI	ASST	2 cut(s)	72, 126
SfaNI	GCATC	3 cut(s)	73, 191, 227
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	17, 27
TasI	AATT	2 cut(s)	17, 27
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	26, 30
Tru9I	TTAA	2 cut(s)	26, 30
TseFI	GTSAC	2 cut(s)	142, 175
Tsp45I	GTSAC	2 cut(s)	142, 175
TspDTI	ATGAA	3 cut(s)	80, 134, 180
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.